Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00103 * 2 1 4 4 C 1.53002 * 109.47057 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46810 * 65.00399 * 4 3 2 6 6 C 1.46499 * 120.00381 * 90.00065 * 5 4 3 7 7 C 1.50701 * 109.46992 * 269.99655 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 C 1.39048 * 119.99864 * 269.99523 * 5 4 3 16 16 C 1.39532 * 120.23865 * 185.00185 * 15 5 4 17 17 C 1.38418 * 117.83163 * 179.97438 * 16 15 5 18 18 C 1.38686 * 118.44814 * 0.02562 * 17 16 15 19 19 N 1.32072 * 119.59666 * 359.94955 * 18 17 16 20 20 N 1.28265 * 122.38657 * 359.80551 * 19 18 17 21 21 C 1.51326 * 109.49788 * 179.97438 * 18 17 16 22 22 C 1.54370 * 105.24568 * 17.14952 * 21 18 17 23 23 C 1.50990 * 131.57215 * 180.02562 * 17 16 15 24 24 H 1.09000 * 109.46689 * 299.99951 * 1 2 3 25 25 H 1.09003 * 109.47060 * 59.99747 * 1 2 3 26 26 H 1.09001 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46939 * 60.00614 * 3 2 1 28 28 H 1.08997 * 109.47058 * 300.00053 * 3 2 1 29 29 H 1.08992 * 109.47054 * 305.00372 * 4 3 2 30 30 H 1.08994 * 109.47108 * 184.99659 * 4 3 2 31 31 H 1.09002 * 109.47391 * 149.99645 * 6 5 4 32 32 H 1.09001 * 109.46813 * 29.99701 * 6 5 4 33 33 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 34 34 H 1.07994 * 121.07973 * 359.95852 * 16 15 5 35 35 H 1.09005 * 110.28400 * 136.09266 * 21 18 17 36 36 H 1.08995 * 110.28506 * 258.20416 * 21 18 17 37 37 H 1.09000 * 110.80676 * 91.98625 * 22 21 18 38 38 H 1.09001 * 110.80662 * 215.29337 * 22 21 18 39 39 H 1.08996 * 110.31572 * 281.86853 * 23 17 16 40 40 H 1.08996 * 110.31515 * 44.04313 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2864 1.4006 -2.4149 7 6 3.0415 1.5937 -3.2420 8 1 2.1118 1.1394 -2.9328 9 6 3.0893 2.3513 -4.3930 10 7 2.0028 2.5202 -5.1146 11 14 4.6971 3.1378 -4.9275 12 1 5.4372 2.2006 -5.8102 13 1 4.4121 4.3935 -5.6672 14 1 5.5202 3.4445 -3.7302 15 6 4.0986 -0.8180 -1.3383 16 6 4.6160 -1.4074 -2.4924 17 6 4.7168 -2.7875 -2.5236 18 6 4.3000 -3.5057 -1.4128 19 7 3.8228 -2.8633 -0.3622 20 7 3.7300 -1.5847 -0.3225 21 6 4.4981 -4.9848 -1.6642 22 6 5.4757 -5.0666 -2.8561 23 6 5.2204 -3.7314 -3.5891 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8515 0.5681 0.8408 30 1 3.9786 2.1764 0.0889 31 1 5.0519 0.9135 -3.0188 32 1 4.6523 2.3703 -2.0773 33 1 2.0364 3.0529 -5.9245 34 1 4.9273 -0.8063 -3.3338 35 1 4.9322 -5.4625 -0.7858 36 1 3.5488 -5.4549 -1.9209 37 1 6.5068 -5.1268 -2.5078 38 1 5.2350 -5.9151 -3.4967 39 1 4.4665 -3.8631 -4.3652 40 1 6.1474 -3.3545 -4.0212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610929790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = 21.812536 kcal Electronic energy + Delta-G solvation = -22161.531953 eV Core-core repulsion = 18977.152225 eV Total energy + Delta-G solvation = -3184.379728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59835 -37.82889 -36.70777 -35.66690 -32.72276 -31.87464 -29.85542 -29.65491 -28.00669 -26.60748 -25.50381 -23.93138 -22.51023 -22.12230 -20.69036 -19.95303 -17.28408 -16.95774 -16.40579 -15.78500 -15.51508 -15.15507 -14.79167 -14.65996 -14.36849 -13.72438 -13.53665 -13.40397 -12.83088 -12.59455 -12.53884 -12.29082 -12.15932 -11.68773 -11.62044 -11.35607 -11.11657 -11.09377 -10.88522 -10.69346 -10.60848 -10.30086 -10.23769 -9.73676 -9.43294 -9.00979 -8.98263 -8.76860 -8.68202 -6.90473 -6.23238 -4.24191 1.58465 1.90661 3.13631 3.21421 3.22829 3.59865 4.23267 4.34683 4.42905 4.50898 4.63737 5.03684 5.05451 5.10608 5.21319 5.39892 5.61518 5.63868 5.70908 5.74929 5.77260 5.82314 5.86658 5.89393 5.94099 6.00675 6.05971 6.11455 6.14355 6.19349 6.31675 6.48777 6.55993 6.61092 6.78636 6.83507 7.40711 7.72439 7.88856 8.06974 8.38061 8.85667 9.35250 9.68245 10.89387 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.007255 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.697741 B = 3858.453579 C = 5206.716784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.041 3.959 4 C 0.137 3.863 5 N -0.572 5.572 6 C 0.220 3.780 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.075 3.925 10 N -0.891 5.891 11 Si 0.870 3.130 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.364 3.636 16 C -0.161 4.161 17 C -0.072 4.072 18 C -0.022 4.022 19 N -0.203 5.203 20 N -0.291 5.291 21 C -0.051 4.051 22 C -0.118 4.118 23 C -0.080 4.080 24 H 0.030 0.970 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.027 0.973 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -8.433 5.444 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C -0.037 4.037 4 C 0.013 3.987 5 N -0.283 5.283 6 C 0.099 3.901 7 C -0.575 4.575 8 H 0.099 0.901 9 C -0.128 4.128 10 N -0.529 5.529 11 Si 0.696 3.304 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.189 1.189 15 C 0.123 3.877 16 C -0.194 4.194 17 C -0.083 4.083 18 C -0.173 4.173 19 N -0.045 5.045 20 N -0.143 5.143 21 C -0.090 4.090 22 C -0.156 4.156 23 C -0.118 4.118 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.785 -8.304 6.814 11.759 hybrid contribution 0.836 1.099 -2.087 2.502 sum 5.621 -7.205 4.727 10.289 Atomic orbital electron populations 1.22613 0.82762 1.01716 0.99136 1.88085 1.17968 1.26919 1.95173 1.23081 0.94809 0.85537 1.00278 1.21333 0.92456 0.98110 0.86820 1.46459 1.68161 1.00583 1.13055 1.19818 0.97068 0.89658 0.83579 1.21467 0.96132 1.32542 1.07387 0.90145 1.24889 0.96172 0.95756 0.96019 1.69892 1.27746 1.39604 1.15661 0.86952 0.84305 0.79617 0.79483 1.19924 1.20857 1.18915 1.19868 0.89685 0.87150 0.90962 1.21374 1.04449 0.93871 0.99740 1.21211 0.96705 0.93458 0.96909 1.22926 1.03613 0.97676 0.93097 1.72249 1.08264 1.01633 1.22356 1.73118 1.19558 0.97383 1.24225 1.20673 0.99831 0.90101 0.98411 1.22313 0.99607 0.97019 0.96634 1.20960 1.01475 0.93106 0.96211 0.95132 0.94427 0.90617 0.94128 0.91411 0.90035 0.89845 0.95487 0.94611 0.92412 0.83758 0.90443 0.90172 0.90948 0.90270 0.89508 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 101.05 1.11 1.70 16 2 O -0.36 -7.42 9.22 -35.23 -0.32 -7.74 16 3 C 0.04 0.76 6.28 37.16 0.23 1.00 16 4 C 0.14 2.49 5.90 -4.04 -0.02 2.47 16 5 N -0.57 -12.05 2.55 -175.04 -0.45 -12.49 16 6 C 0.22 4.92 4.14 -5.19 -0.02 4.90 16 7 C -0.54 -14.22 9.37 -34.44 -0.32 -14.55 16 8 H 0.08 2.43 7.48 -52.49 -0.39 2.04 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 11 Si 0.87 19.76 27.47 -169.99 -4.67 15.09 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 15 C 0.36 7.83 7.14 -154.74 -1.10 6.72 16 16 C -0.16 -3.23 9.35 -39.03 -0.37 -3.60 16 17 C -0.07 -1.26 6.20 -104.25 -0.65 -1.91 16 18 C -0.02 -0.39 7.42 -82.02 -0.61 -1.00 16 19 N -0.20 -4.18 11.50 33.79 0.39 -3.80 16 20 N -0.29 -6.32 9.24 31.24 0.29 -6.03 16 21 C -0.05 -0.64 6.76 -26.86 -0.18 -0.83 16 22 C -0.12 -1.21 7.08 -25.26 -0.18 -1.39 16 23 C -0.08 -1.02 6.76 -26.99 -0.18 -1.20 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.44 6.95 -51.93 -0.36 1.07 16 29 H 0.08 1.45 7.47 -51.93 -0.39 1.07 16 30 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 31 H 0.03 0.59 5.47 -51.93 -0.28 0.31 16 32 H 0.04 0.77 6.95 -51.93 -0.36 0.41 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.14 2.88 6.15 -52.49 -0.32 2.55 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -31.65 325.67 -7.38 -39.03 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.91 Total: 2.00 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.39 Total: -5.76 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 1.00 Total: -47.52 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.32 Total: -7.74 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.65 -7.38 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610929790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.840 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds