Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00103 * 2 1 4 4 C 1.53002 * 109.47057 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46810 * 65.00399 * 4 3 2 6 6 C 1.46499 * 120.00381 * 90.00065 * 5 4 3 7 7 C 1.50701 * 109.46992 * 269.99655 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 C 1.39048 * 119.99864 * 269.99523 * 5 4 3 16 16 C 1.39532 * 120.23865 * 185.00185 * 15 5 4 17 17 C 1.38418 * 117.83163 * 179.97438 * 16 15 5 18 18 C 1.38686 * 118.44814 * 0.02562 * 17 16 15 19 19 N 1.32072 * 119.59666 * 359.94955 * 18 17 16 20 20 N 1.28265 * 122.38657 * 359.80551 * 19 18 17 21 21 C 1.51326 * 109.49788 * 179.97438 * 18 17 16 22 22 C 1.54370 * 105.24568 * 17.14952 * 21 18 17 23 23 C 1.50990 * 131.57215 * 180.02562 * 17 16 15 24 24 H 1.09000 * 109.46689 * 299.99951 * 1 2 3 25 25 H 1.09003 * 109.47060 * 59.99747 * 1 2 3 26 26 H 1.09001 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46939 * 60.00614 * 3 2 1 28 28 H 1.08997 * 109.47058 * 300.00053 * 3 2 1 29 29 H 1.08992 * 109.47054 * 305.00372 * 4 3 2 30 30 H 1.08994 * 109.47108 * 184.99659 * 4 3 2 31 31 H 1.09002 * 109.47391 * 149.99645 * 6 5 4 32 32 H 1.09001 * 109.46813 * 29.99701 * 6 5 4 33 33 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 34 34 H 1.07994 * 121.07973 * 359.95852 * 16 15 5 35 35 H 1.09005 * 110.28400 * 136.09266 * 21 18 17 36 36 H 1.08995 * 110.28506 * 258.20416 * 21 18 17 37 37 H 1.09000 * 110.80676 * 91.98625 * 22 21 18 38 38 H 1.09001 * 110.80662 * 215.29337 * 22 21 18 39 39 H 1.08996 * 110.31572 * 281.86853 * 23 17 16 40 40 H 1.08996 * 110.31515 * 44.04313 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2864 1.4006 -2.4149 7 6 3.0415 1.5937 -3.2420 8 1 2.1118 1.1394 -2.9328 9 6 3.0893 2.3513 -4.3930 10 7 2.0028 2.5202 -5.1146 11 14 4.6971 3.1378 -4.9275 12 1 5.4372 2.2006 -5.8102 13 1 4.4121 4.3935 -5.6672 14 1 5.5202 3.4445 -3.7302 15 6 4.0986 -0.8180 -1.3383 16 6 4.6160 -1.4074 -2.4924 17 6 4.7168 -2.7875 -2.5236 18 6 4.3000 -3.5057 -1.4128 19 7 3.8228 -2.8633 -0.3622 20 7 3.7300 -1.5847 -0.3225 21 6 4.4981 -4.9848 -1.6642 22 6 5.4757 -5.0666 -2.8561 23 6 5.2204 -3.7314 -3.5891 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8515 0.5681 0.8408 30 1 3.9786 2.1764 0.0889 31 1 5.0519 0.9135 -3.0188 32 1 4.6523 2.3703 -2.0773 33 1 2.0364 3.0529 -5.9245 34 1 4.9273 -0.8063 -3.3338 35 1 4.9322 -5.4625 -0.7858 36 1 3.5488 -5.4549 -1.9209 37 1 6.5068 -5.1268 -2.5078 38 1 5.2350 -5.9151 -3.4967 39 1 4.4665 -3.8631 -4.3652 40 1 6.1474 -3.3545 -4.0212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610929790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = 1.728918 kcal Electronic energy + Delta-G solvation = -22162.402844 eV Core-core repulsion = 18977.152225 eV Total energy + Delta-G solvation = -3185.250619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.02825 -39.30387 -38.08111 -37.12755 -34.73888 -33.30288 -31.47144 -31.03952 -29.44468 -28.04834 -26.97723 -25.37973 -24.13813 -23.64810 -21.90775 -21.35878 -19.13203 -18.58547 -17.96870 -17.16597 -16.78946 -16.70369 -16.34715 -16.12812 -15.99111 -15.13818 -15.09928 -14.69338 -14.41598 -14.14385 -13.89293 -13.71291 -13.45463 -13.29160 -12.99436 -12.79986 -12.58274 -12.36648 -12.20283 -12.04209 -11.98513 -11.91228 -11.66885 -11.64291 -11.13684 -10.81923 -10.50307 -10.33511 -10.20501 -8.50098 -8.31056 -6.38219 0.10191 0.44231 1.36392 1.37397 1.47516 2.06974 2.31352 2.86993 3.00122 3.02351 3.27609 3.46186 3.87057 3.91496 4.04330 4.22787 4.23350 4.26346 4.32812 4.39485 4.48015 4.51184 4.58686 4.64742 4.73638 4.76854 4.83142 4.86156 4.87077 4.96816 5.04559 5.06425 5.22492 5.30307 5.38717 5.41718 5.48195 6.02623 6.33600 6.48008 6.50835 6.68221 7.25949 8.16702 8.85077 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.007255 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.697741 B = 3858.453579 C = 5206.716784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.045 3.955 4 C 0.133 3.867 5 N -0.582 5.582 6 C 0.230 3.770 7 C -0.532 4.532 8 H 0.025 0.975 9 C 0.016 3.984 10 N -0.945 5.945 11 Si 0.943 3.057 12 H -0.264 1.264 13 H -0.285 1.285 14 H -0.237 1.237 15 C 0.344 3.656 16 C -0.188 4.188 17 C -0.071 4.071 18 C -0.023 4.023 19 N -0.235 5.235 20 N -0.313 5.313 21 C -0.052 4.052 22 C -0.103 4.103 23 C -0.082 4.082 24 H 0.060 0.940 25 H 0.019 0.981 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 -9.739 5.439 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.293 5.293 6 C 0.107 3.893 7 C -0.571 4.571 8 H 0.044 0.956 9 C -0.183 4.183 10 N -0.585 5.585 11 Si 0.765 3.235 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.160 1.160 15 C 0.103 3.897 16 C -0.221 4.221 17 C -0.082 4.082 18 C -0.175 4.175 19 N -0.075 5.075 20 N -0.164 5.164 21 C -0.091 4.091 22 C -0.141 4.141 23 C -0.119 4.119 24 H 0.079 0.921 25 H 0.038 0.962 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.113 0.887 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.260 -9.637 6.857 13.878 hybrid contribution -0.050 1.347 -2.066 2.467 sum 7.210 -8.290 4.791 11.986 Atomic orbital electron populations 1.22719 0.81462 1.02462 0.99679 1.88049 1.19616 1.28046 1.95297 1.23072 0.95296 0.84895 1.00000 1.21549 0.92116 0.99366 0.85932 1.46446 1.68968 1.00589 1.13329 1.19614 0.95029 0.90775 0.83842 1.21560 0.95830 1.31660 1.08074 0.95644 1.25831 1.00220 0.96343 0.95874 1.70069 1.30731 1.41198 1.16539 0.85787 0.79427 0.78300 0.79948 1.18898 1.21026 1.16001 1.20095 0.90454 0.87430 0.91704 1.21528 1.05733 0.95420 0.99380 1.21842 0.95021 0.92925 0.98383 1.23837 1.01273 1.00384 0.92031 1.72150 1.09768 1.01441 1.24165 1.73034 1.20396 0.98086 1.24851 1.20927 1.01401 0.86486 1.00290 1.22361 0.99744 0.96492 0.95480 1.21174 1.02235 0.93248 0.95255 0.92121 0.96213 0.89845 0.90764 0.95043 0.89706 0.87185 0.94488 0.92887 0.92376 0.84280 0.88898 0.88955 0.89480 0.86938 0.88673 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 11.01 113.37 1.25 2.42 16 2 O -0.39 -16.54 9.22 -148.98 -1.37 -17.91 16 3 C 0.05 1.73 6.28 71.98 0.45 2.18 16 4 C 0.13 4.88 5.90 86.38 0.51 5.39 16 5 N -0.58 -24.90 2.55 -707.69 -1.80 -26.70 16 6 C 0.23 10.25 4.14 85.63 0.35 10.61 16 7 C -0.53 -29.26 9.37 25.60 0.24 -29.02 16 8 H 0.03 1.64 7.48 -2.91 -0.02 1.62 16 9 C 0.02 0.86 5.47 84.66 0.46 1.32 16 10 N -0.95 -57.24 13.96 21.45 0.30 -56.94 16 11 Si 0.94 40.43 27.47 68.60 1.88 42.31 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 14 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 15 C 0.34 15.12 7.14 133.11 0.95 16.07 16 16 C -0.19 -7.60 9.35 22.62 0.21 -7.39 16 17 C -0.07 -2.40 6.20 -19.62 -0.12 -2.52 16 18 C -0.02 -0.80 7.42 42.83 0.32 -0.48 16 19 N -0.23 -9.72 11.50 -47.01 -0.54 -10.26 16 20 N -0.31 -13.88 9.24 -55.06 -0.51 -14.38 16 21 C -0.05 -1.15 6.76 30.51 0.21 -0.94 16 22 C -0.10 -1.66 7.08 31.55 0.22 -1.43 16 23 C -0.08 -1.83 6.76 30.43 0.21 -1.63 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.03 1.41 6.95 -2.39 -0.02 1.40 16 29 H 0.08 3.03 7.47 -2.39 -0.02 3.02 16 30 H 0.11 3.33 7.89 -2.39 -0.02 3.31 16 31 H 0.04 1.59 5.47 -2.39 -0.01 1.58 16 32 H 0.05 2.19 6.95 -2.39 -0.02 2.18 16 33 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.14 5.62 6.15 -2.91 -0.02 5.60 16 35 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -73.39 325.67 4.19 -69.20 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.98 Total: 20.12 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.26 Total: -5.43 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -2.55 Total: -108.29 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -1.37 Total: -17.91 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.88 Total: 42.31 kcal Total: -73.39 4.19 -69.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610929790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.925 kcal (2) G-P(sol) polarization free energy of solvation -73.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds