Wall clock time and date at job start Mon Mar 30 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00330 * 3 2 1 5 5 H 1.48507 * 109.46945 * 30.00625 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50699 * 109.46767 * 66.20188 * 14 13 12 16 16 N 1.31791 * 119.08736 * 269.72857 * 15 14 13 17 17 C 1.32543 * 121.01321 * 179.76227 * 16 15 14 18 18 C 1.38121 * 119.19881 * 0.50250 * 17 16 15 19 19 C 1.39626 * 118.33125 * 359.75660 * 18 17 16 20 20 N 1.38543 * 120.52740 * 180.02562 * 19 18 17 21 21 N 1.31749 * 119.08213 * 90.00305 * 15 14 13 22 22 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 23 23 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 24 24 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 26 26 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 27 27 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 28 28 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 29 29 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 30 30 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 31 31 H 1.08997 * 109.46863 * 186.20099 * 14 13 12 32 32 H 1.09003 * 109.47129 * 306.20540 * 14 13 12 33 33 H 1.08001 * 120.40436 * 180.25657 * 17 16 15 34 34 H 1.07998 * 120.83145 * 179.72941 * 18 17 16 35 35 H 0.97003 * 119.99706 * 179.97438 * 20 19 18 36 36 H 0.96996 * 120.00417 * 359.97438 * 20 19 18 37 37 H 1.09002 * 109.48908 * 180.71202 * 22 13 12 38 38 H 1.09002 * 109.49369 * 60.64073 * 22 13 12 39 39 H 1.08997 * 109.49355 * 296.78047 * 23 10 9 40 40 H 1.09003 * 109.49032 * 56.82589 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5207 -8.4808 -0.9460 16 7 3.2051 -9.0384 0.2057 17 6 2.5389 -10.1834 0.2503 18 6 2.1819 -10.8017 -0.9321 19 6 2.5363 -10.1870 -2.1346 20 7 2.2007 -10.7671 -3.3471 21 7 3.2006 -9.0355 -2.0973 22 6 4.0043 -4.7809 -1.1842 23 6 2.9687 -3.6562 -1.2558 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8897 27 1 0.9734 -4.8433 1.1788 28 1 0.8254 -5.0915 -0.5780 29 1 3.2356 -5.8353 1.1420 30 1 2.0486 -6.9718 0.4571 31 1 4.9008 -7.1180 -1.8359 32 1 4.9009 -7.1180 -0.0559 33 1 2.2817 -10.6295 1.1996 34 1 1.6425 -11.7373 -0.9265 35 1 2.4504 -10.3332 -4.1780 36 1 1.7160 -11.6071 -3.3653 37 1 4.5519 -4.8316 -2.1253 38 1 4.6998 -4.5834 -0.3685 39 1 2.2897 -3.8396 -2.0885 40 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611176192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:37 Heat of formation + Delta-G solvation = 68.314129 kcal Electronic energy + Delta-G solvation = -21264.697722 eV Core-core repulsion = 18114.627205 eV Total energy + Delta-G solvation = -3150.070516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05140 -38.59627 -35.98523 -34.96960 -33.06578 -32.33545 -30.81170 -30.26088 -28.60996 -26.41161 -24.42930 -23.78968 -22.86738 -22.16422 -21.19990 -19.08870 -18.30728 -17.54349 -16.25879 -16.03262 -15.97233 -15.49333 -14.92023 -14.68775 -14.41785 -14.31702 -14.12493 -13.81229 -13.47235 -13.15654 -12.65033 -12.13710 -12.06369 -11.76461 -11.45782 -11.13953 -10.91980 -10.76343 -10.66346 -10.58837 -10.31101 -10.26581 -10.03072 -9.64403 -9.26635 -9.11145 -8.60697 -8.39512 -8.07237 -7.15026 -5.97876 -3.99136 0.91442 1.29004 3.07105 3.35064 3.41012 3.45585 3.64959 3.99271 4.25416 4.42467 4.46810 4.72033 5.02078 5.04472 5.19879 5.30781 5.37684 5.46367 5.53419 5.67588 5.68775 5.91328 5.96120 5.98794 6.14458 6.19552 6.34591 6.53710 6.67089 6.69295 6.75754 6.93056 7.24354 7.25921 7.40859 7.42615 7.45833 7.85616 8.15443 8.24578 8.28122 8.61682 9.08621 9.64878 11.13089 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.037919 B = 0.003310 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.236052 B = 8456.158892 C = 8537.034968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.058 3.942 12 C 0.063 3.937 13 N -0.532 5.532 14 C 0.121 3.879 15 C 0.379 3.621 16 N -0.554 5.554 17 C 0.177 3.823 18 C -0.301 4.301 19 C 0.437 3.563 20 N -0.839 5.839 21 N -0.561 5.561 22 C 0.061 3.939 23 C 0.068 3.932 24 H 0.261 0.739 25 H -0.009 1.009 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.164 0.836 34 H 0.138 0.862 35 H 0.407 0.593 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.028 0.972 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -23.032 -4.002 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.071 4.071 12 C -0.065 4.065 13 N -0.258 5.258 14 C -0.009 4.009 15 C 0.110 3.890 16 N -0.273 5.273 17 C 0.014 3.986 18 C -0.330 4.330 19 C 0.191 3.809 20 N -0.383 5.383 21 N -0.285 5.285 22 C -0.067 4.067 23 C -0.060 4.060 24 H 0.070 0.930 25 H 0.009 0.991 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.182 0.818 34 H 0.156 0.844 35 H 0.237 0.763 36 H 0.240 0.760 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.079 -22.056 -3.962 23.219 hybrid contribution -0.431 -0.221 -0.409 0.634 sum 5.648 -22.276 -4.371 23.393 Atomic orbital electron populations 1.69961 1.06078 1.26706 1.51158 1.24995 0.94852 0.99298 0.95523 0.86506 0.79816 0.83148 0.77995 1.20759 1.21315 1.19767 1.21166 0.93471 0.89953 1.49844 0.91874 1.19699 0.90081 0.87335 0.96069 1.62287 1.28119 1.02727 1.33177 1.22067 0.94826 0.90016 1.00241 1.22202 0.96202 0.98516 0.89586 1.62108 1.25293 1.02661 1.35693 1.20749 0.92501 0.84989 1.02635 1.22716 0.89703 0.94254 0.82355 1.68320 1.17117 1.12009 1.29850 1.22887 0.88622 0.89195 0.97896 1.22079 1.12224 1.05446 0.93218 1.18548 0.87391 0.88142 0.86858 1.42165 1.63669 1.27364 1.05092 1.67772 1.18626 1.10557 1.31588 1.22258 0.96205 0.87924 1.00291 1.21985 0.95453 0.97295 0.91316 0.92975 0.99130 0.95269 0.91098 0.95519 0.93876 0.91053 0.88567 0.91999 0.81842 0.84407 0.76280 0.76003 0.90894 0.93976 0.95350 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.46 8.47 -34.44 -0.29 -14.75 16 8 H 0.06 1.78 7.13 -52.49 -0.37 1.40 16 9 C 0.19 5.22 4.72 -4.98 -0.02 5.20 16 10 N -0.54 -12.22 4.70 -235.90 -1.11 -13.33 16 11 C 0.06 1.15 5.61 -3.76 -0.02 1.13 16 12 C 0.06 1.08 5.38 -3.77 -0.02 1.06 16 13 N -0.53 -8.67 4.70 -235.90 -1.11 -9.78 16 14 C 0.12 1.67 5.40 -4.97 -0.03 1.64 16 15 C 0.38 5.35 6.42 -157.24 -1.01 4.34 16 16 N -0.55 -7.40 9.18 -10.81 -0.10 -7.50 16 17 C 0.18 1.82 11.29 -17.29 -0.20 1.62 16 18 C -0.30 -2.77 10.04 -39.11 -0.39 -3.16 16 19 C 0.44 4.72 7.82 -154.77 -1.21 3.51 16 20 N -0.84 -5.82 9.06 31.24 0.28 -5.53 16 21 N -0.56 -7.64 10.37 -9.96 -0.10 -7.75 16 22 C 0.06 1.00 5.61 -3.76 -0.02 0.98 16 23 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 26 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 27 H 0.07 1.38 8.07 -51.93 -0.42 0.97 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.20 6.39 -51.93 -0.33 0.87 16 31 H 0.10 1.20 8.03 -51.93 -0.42 0.79 16 32 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 33 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.41 2.63 8.95 -40.82 -0.37 2.26 16 36 H 0.41 1.56 8.84 -40.82 -0.36 1.20 16 37 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -33.51 327.32 -10.79 -44.31 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.97 Total: -0.15 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -3.33 Total: 4.41 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.40 Total: -70.37 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.51 -10.79 -44.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.620 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds