Wall clock time and date at job start Mon Mar 30 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00330 * 3 2 1 5 5 H 1.48507 * 109.46945 * 30.00625 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50699 * 109.46767 * 66.20188 * 14 13 12 16 16 N 1.31791 * 119.08736 * 269.72857 * 15 14 13 17 17 C 1.32543 * 121.01321 * 179.76227 * 16 15 14 18 18 C 1.38121 * 119.19881 * 0.50250 * 17 16 15 19 19 C 1.39626 * 118.33125 * 359.75660 * 18 17 16 20 20 N 1.38543 * 120.52740 * 180.02562 * 19 18 17 21 21 N 1.31749 * 119.08213 * 90.00305 * 15 14 13 22 22 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 23 23 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 24 24 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 26 26 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 27 27 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 28 28 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 29 29 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 30 30 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 31 31 H 1.08997 * 109.46863 * 186.20099 * 14 13 12 32 32 H 1.09003 * 109.47129 * 306.20540 * 14 13 12 33 33 H 1.08001 * 120.40436 * 180.25657 * 17 16 15 34 34 H 1.07998 * 120.83145 * 179.72941 * 18 17 16 35 35 H 0.97003 * 119.99706 * 179.97438 * 20 19 18 36 36 H 0.96996 * 120.00417 * 359.97438 * 20 19 18 37 37 H 1.09002 * 109.48908 * 180.71202 * 22 13 12 38 38 H 1.09002 * 109.49369 * 60.64073 * 22 13 12 39 39 H 1.08997 * 109.49355 * 296.78047 * 23 10 9 40 40 H 1.09003 * 109.49032 * 56.82589 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5207 -8.4808 -0.9460 16 7 3.2051 -9.0384 0.2057 17 6 2.5389 -10.1834 0.2503 18 6 2.1819 -10.8017 -0.9321 19 6 2.5363 -10.1870 -2.1346 20 7 2.2007 -10.7671 -3.3471 21 7 3.2006 -9.0355 -2.0973 22 6 4.0043 -4.7809 -1.1842 23 6 2.9687 -3.6562 -1.2558 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8897 27 1 0.9734 -4.8433 1.1788 28 1 0.8254 -5.0915 -0.5780 29 1 3.2356 -5.8353 1.1420 30 1 2.0486 -6.9718 0.4571 31 1 4.9008 -7.1180 -1.8359 32 1 4.9009 -7.1180 -0.0559 33 1 2.2817 -10.6295 1.1996 34 1 1.6425 -11.7373 -0.9265 35 1 2.4504 -10.3332 -4.1780 36 1 1.7160 -11.6071 -3.3653 37 1 4.5519 -4.8316 -2.1253 38 1 4.6998 -4.5834 -0.3685 39 1 2.2897 -3.8396 -2.0885 40 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611176192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:37 Heat of formation + Delta-G solvation = 41.955484 kcal Electronic energy + Delta-G solvation = -21265.840718 eV Core-core repulsion = 18114.627205 eV Total energy + Delta-G solvation = -3151.213513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89428 -40.07933 -37.08703 -36.21477 -34.65694 -33.75236 -31.94459 -31.58056 -30.10857 -28.07084 -25.92681 -24.70862 -24.33126 -23.54861 -22.75400 -20.65035 -19.09081 -18.50453 -18.28196 -17.40427 -16.67726 -16.53777 -16.26424 -15.96258 -15.88007 -15.68161 -15.57165 -15.18371 -14.76065 -14.66990 -14.07462 -13.83774 -13.49468 -13.02471 -12.91614 -12.74850 -12.59669 -12.50222 -12.24513 -12.11024 -12.02000 -11.59847 -11.50624 -11.17470 -10.88350 -10.61624 -10.13446 -9.41027 -9.25489 -9.04963 -8.19929 -6.30710 0.08388 0.49465 1.42290 1.44265 1.56039 2.39877 2.41394 2.67635 3.12025 3.12680 3.28083 3.29264 3.52371 3.97348 4.00595 4.19531 4.21130 4.35465 4.36238 4.44071 4.51417 4.55498 4.65604 4.72837 4.79265 4.87540 4.95758 5.01345 5.05206 5.22435 5.26527 5.45088 5.64339 5.96219 5.96743 6.02236 6.07617 6.26253 6.33440 6.59807 6.82732 6.85117 7.39132 7.42181 8.91717 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.037919 B = 0.003310 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.236052 B = 8456.158892 C = 8537.034968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.542 5.542 11 C 0.058 3.942 12 C 0.081 3.919 13 N -0.542 5.542 14 C 0.126 3.874 15 C 0.358 3.642 16 N -0.577 5.577 17 C 0.162 3.838 18 C -0.290 4.290 19 C 0.419 3.581 20 N -0.823 5.823 21 N -0.587 5.587 22 C 0.072 3.928 23 C 0.069 3.931 24 H 0.265 0.735 25 H -0.042 1.042 26 H 0.002 0.998 27 H 0.069 0.931 28 H 0.012 0.988 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.195 0.805 34 H 0.174 0.826 35 H 0.410 0.590 36 H 0.425 0.575 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.012 0.988 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.034 -24.394 -4.250 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.266 5.266 11 C -0.070 4.070 12 C -0.047 4.047 13 N -0.268 5.268 14 C -0.003 4.003 15 C 0.088 3.912 16 N -0.297 5.297 17 C 0.001 3.999 18 C -0.318 4.318 19 C 0.172 3.828 20 N -0.368 5.368 21 N -0.313 5.313 22 C -0.055 4.055 23 C -0.059 4.059 24 H 0.073 0.927 25 H -0.025 1.025 26 H 0.020 0.980 27 H 0.087 0.913 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.211 0.789 34 H 0.191 0.809 35 H 0.240 0.760 36 H 0.259 0.741 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.368 -23.485 -4.230 24.974 hybrid contribution -0.912 0.052 -0.382 0.990 sum 6.456 -23.433 -4.612 24.739 Atomic orbital electron populations 1.70099 1.07892 1.27959 1.51781 1.25974 0.95762 1.03396 0.94699 0.85321 0.78548 0.77895 0.78477 1.19690 1.20796 1.18681 1.21448 0.93712 0.90810 1.50100 0.91559 1.19361 0.90123 0.89122 0.93175 1.62243 1.27142 1.02698 1.34565 1.22118 0.95576 0.89820 0.99528 1.21961 0.95436 0.97162 0.90184 1.62040 1.26405 1.03324 1.35001 1.20737 0.92010 0.84107 1.03452 1.22641 0.90922 0.94662 0.82968 1.68292 1.18217 1.13483 1.29694 1.23472 0.88083 0.88556 0.99743 1.22443 1.11008 1.06179 0.92138 1.18939 0.87397 0.87889 0.88573 1.42158 1.62847 1.27650 1.04138 1.67713 1.19849 1.12041 1.31649 1.22140 0.94727 0.86626 1.02019 1.22000 0.95678 0.98673 0.89576 0.92670 1.02465 0.97963 0.91258 0.96945 0.93950 0.90369 0.87356 0.91460 0.78860 0.80874 0.75950 0.74150 0.88046 0.93512 0.96929 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.52 -30.51 8.47 25.60 0.22 -30.29 16 8 H 0.07 3.75 7.13 -2.91 -0.02 3.73 16 9 C 0.21 11.79 4.72 85.56 0.40 12.19 16 10 N -0.54 -25.32 4.70 -900.26 -4.23 -29.55 16 11 C 0.06 2.39 5.61 86.31 0.48 2.88 16 12 C 0.08 2.75 5.38 86.31 0.46 3.21 16 13 N -0.54 -17.20 4.70 -900.24 -4.23 -21.43 16 14 C 0.13 3.31 5.40 85.55 0.46 3.77 16 15 C 0.36 9.70 6.42 138.76 0.89 10.59 16 16 N -0.58 -14.62 9.18 -188.11 -1.73 -16.35 16 17 C 0.16 2.98 11.29 84.56 0.95 3.94 16 18 C -0.29 -4.53 10.04 22.58 0.23 -4.30 16 19 C 0.42 8.22 7.82 133.16 1.04 9.26 16 20 N -0.82 -9.56 9.06 -55.08 -0.50 -10.06 16 21 N -0.59 -15.26 10.37 -185.44 -1.92 -17.19 16 22 C 0.07 2.31 5.61 86.31 0.48 2.79 16 23 C 0.07 2.86 5.43 86.31 0.47 3.33 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 26 H 0.00 0.14 8.03 -2.39 -0.02 0.12 16 27 H 0.07 2.81 8.07 -2.39 -0.02 2.79 16 28 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 2.58 6.39 -2.39 -0.02 2.57 16 31 H 0.11 2.53 8.03 -2.39 -0.02 2.51 16 32 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 33 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.41 4.55 8.95 -92.71 -0.83 3.72 16 36 H 0.43 2.05 8.84 -92.71 -0.82 1.23 16 37 H 0.10 2.68 8.07 -2.39 -0.02 2.66 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 3.29 6.79 -2.39 -0.02 3.28 16 Total: -1.00 -73.88 327.32 -4.33 -78.21 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -0.59 Total: 9.18 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 6.56 Total: 17.81 kcal Atomic # 7 Polarization: -139.91 SS G_CDS: -12.33 Total: -152.23 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -73.88 -4.33 -78.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.169 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds