Wall clock time and date at job start Mon Mar 30 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 C 1.38643 * 120.79007 * 269.71785 * 4 3 2 6 6 C 1.38208 * 119.16141 * 179.80107 * 5 4 3 7 7 N 1.31868 * 120.76386 * 0.48541 * 6 5 4 8 8 C 1.31874 * 121.72670 * 359.74017 * 7 6 5 9 9 C 1.38206 * 120.76037 * 0.02562 * 8 7 6 10 10 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 11 11 O 1.21285 * 119.99996 * 179.97438 * 10 2 1 12 12 C 1.50698 * 120.00318 * 0.02562 * 10 2 1 13 13 H 1.09008 * 109.47236 * 39.99224 * 12 10 2 14 14 N 1.46896 * 109.47704 * 159.99785 * 12 10 2 15 15 C 1.53001 * 109.46955 * 279.99900 * 12 10 2 16 16 C 1.52995 * 109.47289 * 174.99854 * 15 12 10 17 17 C 1.50703 * 109.47203 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99972 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99961 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99933 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00190 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47142 * 90.00287 * 21 19 17 23 23 H 1.48494 * 109.47384 * 210.00292 * 21 19 17 24 24 H 1.48501 * 109.47145 * 330.00463 * 21 19 17 25 25 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 26 26 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 27 27 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 28 28 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 29 29 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 30 30 H 1.08003 * 120.42289 * 0.02562 * 5 4 3 31 31 H 1.07999 * 119.61594 * 180.25324 * 6 5 4 32 32 H 1.07991 * 119.61819 * 180.02562 * 8 7 6 33 33 H 1.08001 * 120.41568 * 179.97438 * 9 8 7 34 34 H 1.00903 * 110.99693 * 59.99338 * 14 12 10 35 35 H 1.00890 * 111.00445 * 183.95150 * 14 12 10 36 36 H 1.09000 * 109.47216 * 294.99976 * 15 12 10 37 37 H 1.08999 * 109.47478 * 54.99974 * 15 12 10 38 38 H 1.09001 * 109.47342 * 299.99717 * 16 15 12 39 39 H 1.08999 * 109.47506 * 59.99653 * 16 15 12 40 40 H 0.96999 * 119.99606 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 6 1.5382 2.5089 2.0880 6 6 1.8003 2.8844 3.3920 7 7 2.9049 2.4939 3.9973 8 6 3.7950 1.7319 3.3923 9 6 3.5984 1.3131 2.0899 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3855 -2.4723 -0.0017 13 1 0.5222 -2.3929 -0.6625 14 7 2.2678 -3.5468 -0.4758 15 6 0.9131 -2.7897 1.4185 16 6 0.0432 -4.0481 1.3974 17 6 -0.4216 -4.3611 2.7964 18 1 -0.1258 -3.7261 3.6184 19 6 -1.2236 -5.4586 3.0270 20 7 -1.6288 -5.7320 4.2480 21 14 -1.7347 -6.5573 1.6053 22 1 -0.7317 -7.6382 1.4296 23 1 -3.0623 -7.1562 1.8950 24 1 -1.8164 -5.7508 0.3611 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6083 2.0284 -0.5138 29 1 3.1498 1.1384 -0.5139 30 1 0.6337 2.8354 1.5963 31 1 1.0942 3.5081 3.9200 32 1 4.6877 1.4316 3.9205 33 1 4.3312 0.6894 1.5996 34 1 3.0763 -3.6404 0.1207 35 1 1.7680 -4.4203 -0.5470 36 1 1.7781 -2.9567 2.0604 37 1 0.3312 -1.9523 1.8036 38 1 -0.8219 -3.8812 0.7556 39 1 0.6250 -4.8856 1.0123 40 1 -2.1934 -6.5039 4.4101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709426225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:57 Heat of formation + Delta-G solvation = -3.665338 kcal Electronic energy + Delta-G solvation = -21543.187742 eV Core-core repulsion = 18357.703211 eV Total energy + Delta-G solvation = -3185.484532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53868 -39.63425 -36.09228 -35.61213 -33.06150 -32.75015 -31.27907 -30.37093 -28.33747 -27.01104 -25.88825 -23.60718 -23.48516 -22.01237 -20.38160 -19.08599 -17.54789 -16.97699 -16.78344 -16.32255 -16.09596 -15.71860 -15.10769 -14.63652 -14.38978 -14.19831 -13.79580 -13.75972 -13.62357 -13.13580 -12.81888 -12.70604 -12.62169 -12.49547 -12.27975 -11.91018 -11.47772 -11.32631 -11.01576 -10.40565 -10.13942 -9.92685 -9.90091 -9.64546 -9.36717 -9.34780 -9.21688 -8.75488 -8.64900 -8.36854 -6.14264 -4.14259 1.04837 1.09444 2.75350 2.98736 3.22578 3.30932 3.31620 3.79671 4.34811 4.38535 4.44951 4.50216 4.74353 4.96767 4.99151 5.03003 5.09365 5.18282 5.19499 5.33414 5.38384 5.47425 5.55343 5.58030 5.66938 5.72675 5.87692 6.08708 6.20506 6.27837 6.38259 6.60363 6.62132 7.04425 7.16290 7.20020 7.43437 7.63063 7.73220 7.89241 8.26408 8.41634 8.89611 9.46652 10.98951 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.004608 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.952105 B = 6074.833933 C = 6781.018428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.615 5.615 3 C 0.155 3.845 4 C -0.062 4.062 5 C -0.162 4.162 6 C 0.094 3.906 7 N -0.485 5.485 8 C 0.096 3.904 9 C -0.148 4.148 10 C 0.529 3.471 11 O -0.532 6.532 12 C 0.072 3.928 13 H 0.097 0.903 14 N -0.830 5.830 15 C -0.131 4.131 16 C -0.009 4.009 17 C -0.525 4.525 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.348 0.652 35 H 0.351 0.649 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 15.921 -9.277 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.349 5.349 3 C 0.032 3.968 4 C -0.071 4.071 5 C -0.182 4.182 6 C -0.063 4.063 7 N -0.194 5.194 8 C -0.061 4.061 9 C -0.168 4.168 10 C 0.318 3.682 11 O -0.408 6.408 12 C -0.043 4.043 13 H 0.115 0.885 14 N -0.362 5.362 15 C -0.170 4.170 16 C -0.047 4.047 17 C -0.563 4.563 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.538 5.538 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.150 0.850 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.785 16.474 -9.002 19.644 hybrid contribution -0.926 -1.370 -0.410 1.704 sum 4.859 15.103 -9.412 18.447 Atomic orbital electron populations 1.22024 0.78954 1.04395 1.02099 1.47824 1.07171 1.05094 1.74860 1.20308 0.99013 0.85671 0.91824 1.20698 0.94014 0.95121 0.97312 1.22038 1.00044 0.99633 0.96492 1.22734 0.94239 0.97256 0.92049 1.67662 1.02758 1.11080 1.37926 1.22791 0.97772 0.93374 0.92124 1.22225 0.98433 0.99997 0.96162 1.20855 0.87963 0.85159 0.74255 1.90613 1.14033 1.87206 1.48907 1.21538 0.95181 0.89401 0.98195 0.88478 1.58745 1.10968 1.09067 1.57445 1.22243 1.00700 1.00864 0.93206 1.19567 0.94459 0.92220 0.98432 1.21050 1.30998 1.11807 0.92411 0.91126 1.25038 0.95473 0.97312 0.95530 1.69914 1.35700 1.28221 1.19984 0.86776 0.78191 0.81078 0.83207 1.20188 1.21288 1.18977 0.92284 0.89431 0.91094 0.89362 0.88646 0.84973 0.82841 0.82776 0.84225 0.83868 0.83472 0.92098 0.91802 0.96367 0.97024 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 9.85 59.85 0.59 1.27 16 2 N -0.62 -7.56 2.86 -182.96 -0.52 -8.09 16 3 C 0.15 1.62 5.58 -5.19 -0.03 1.59 16 4 C -0.06 -0.71 5.50 -104.32 -0.57 -1.28 16 5 C -0.16 -1.65 9.82 -39.44 -0.39 -2.04 16 6 C 0.09 1.06 11.18 -17.55 -0.20 0.87 16 7 N -0.49 -6.51 10.36 -13.25 -0.14 -6.65 16 8 C 0.10 1.21 11.18 -17.55 -0.20 1.01 16 9 C -0.15 -1.86 9.82 -39.44 -0.39 -2.24 16 10 C 0.53 8.21 6.93 -10.99 -0.08 8.14 16 11 O -0.53 -9.48 15.49 5.55 0.09 -9.40 16 12 C 0.07 1.13 2.37 -68.87 -0.16 0.97 16 13 H 0.10 1.41 7.21 -51.92 -0.37 1.04 16 14 N -0.83 -13.14 8.94 -5.65 -0.05 -13.19 16 15 C -0.13 -2.43 4.45 -26.73 -0.12 -2.55 16 16 C -0.01 -0.21 3.81 -27.88 -0.11 -0.31 16 17 C -0.52 -14.44 9.66 -34.44 -0.33 -14.78 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 21 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 1.03 4.83 -51.93 -0.25 0.78 16 27 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 28 H 0.09 0.66 8.03 -51.93 -0.42 0.25 16 29 H 0.10 1.08 7.38 -51.93 -0.38 0.69 16 30 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.14 1.79 7.72 -52.49 -0.41 1.38 16 34 H 0.35 5.63 8.58 -39.29 -0.34 5.29 16 35 H 0.35 5.35 7.55 -39.30 -0.30 5.06 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.18 6.43 -51.93 -0.33 0.84 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.25 6.29 -51.93 -0.33 -0.08 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -33.15 331.49 -7.22 -40.36 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.62 Total: 9.78 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.07 Total: -7.53 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.06 Total: -54.39 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.15 -7.22 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709426225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.697 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds