Wall clock time and date at job start Mon Mar 30 2020 01:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 C 1.38643 * 120.79007 * 269.71785 * 4 3 2 6 6 C 1.38208 * 119.16141 * 179.80107 * 5 4 3 7 7 N 1.31868 * 120.76386 * 0.48541 * 6 5 4 8 8 C 1.31874 * 121.72670 * 359.74017 * 7 6 5 9 9 C 1.38206 * 120.76037 * 0.02562 * 8 7 6 10 10 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 11 11 O 1.21285 * 119.99996 * 179.97438 * 10 2 1 12 12 C 1.50698 * 120.00318 * 0.02562 * 10 2 1 13 13 H 1.09008 * 109.47236 * 39.99224 * 12 10 2 14 14 N 1.46896 * 109.47704 * 159.99785 * 12 10 2 15 15 C 1.53001 * 109.46955 * 279.99900 * 12 10 2 16 16 C 1.52995 * 109.47289 * 174.99854 * 15 12 10 17 17 C 1.50703 * 109.47203 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99972 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99961 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99933 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00190 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47142 * 90.00287 * 21 19 17 23 23 H 1.48494 * 109.47384 * 210.00292 * 21 19 17 24 24 H 1.48501 * 109.47145 * 330.00463 * 21 19 17 25 25 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 26 26 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 27 27 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 28 28 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 29 29 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 30 30 H 1.08003 * 120.42289 * 0.02562 * 5 4 3 31 31 H 1.07999 * 119.61594 * 180.25324 * 6 5 4 32 32 H 1.07991 * 119.61819 * 180.02562 * 8 7 6 33 33 H 1.08001 * 120.41568 * 179.97438 * 9 8 7 34 34 H 1.00903 * 110.99693 * 59.99338 * 14 12 10 35 35 H 1.00890 * 111.00445 * 183.95150 * 14 12 10 36 36 H 1.09000 * 109.47216 * 294.99976 * 15 12 10 37 37 H 1.08999 * 109.47478 * 54.99974 * 15 12 10 38 38 H 1.09001 * 109.47342 * 299.99717 * 16 15 12 39 39 H 1.08999 * 109.47506 * 59.99653 * 16 15 12 40 40 H 0.96999 * 119.99606 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 6 1.5382 2.5089 2.0880 6 6 1.8003 2.8844 3.3920 7 7 2.9049 2.4939 3.9973 8 6 3.7950 1.7319 3.3923 9 6 3.5984 1.3131 2.0899 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3855 -2.4723 -0.0017 13 1 0.5222 -2.3929 -0.6625 14 7 2.2678 -3.5468 -0.4758 15 6 0.9131 -2.7897 1.4185 16 6 0.0432 -4.0481 1.3974 17 6 -0.4216 -4.3611 2.7964 18 1 -0.1258 -3.7261 3.6184 19 6 -1.2236 -5.4586 3.0270 20 7 -1.6288 -5.7320 4.2480 21 14 -1.7347 -6.5573 1.6053 22 1 -0.7317 -7.6382 1.4296 23 1 -3.0623 -7.1562 1.8950 24 1 -1.8164 -5.7508 0.3611 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6083 2.0284 -0.5138 29 1 3.1498 1.1384 -0.5139 30 1 0.6337 2.8354 1.5963 31 1 1.0942 3.5081 3.9200 32 1 4.6877 1.4316 3.9205 33 1 4.3312 0.6894 1.5996 34 1 3.0763 -3.6404 0.1207 35 1 1.7680 -4.4203 -0.5470 36 1 1.7781 -2.9567 2.0604 37 1 0.3312 -1.9523 1.8036 38 1 -0.8219 -3.8812 0.7556 39 1 0.6250 -4.8856 1.0123 40 1 -2.1934 -6.5039 4.4101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709426225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:56 Heat of formation + Delta-G solvation = -27.772205 kcal Electronic energy + Delta-G solvation = -21544.233094 eV Core-core repulsion = 18357.703211 eV Total energy + Delta-G solvation = -3186.529884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52654 -40.68211 -37.34528 -36.83618 -34.85797 -33.87417 -32.15503 -32.10276 -29.38551 -28.17134 -27.16498 -25.05944 -24.38621 -23.04793 -22.02039 -20.22456 -19.06092 -18.45757 -17.88953 -17.25309 -17.14706 -16.58656 -16.33784 -16.14598 -15.83505 -15.61086 -14.94789 -14.83106 -14.61894 -14.60380 -14.34970 -13.86765 -13.64070 -13.53364 -13.37960 -13.20929 -12.85807 -12.65515 -12.29865 -12.08407 -11.90349 -11.67354 -11.43392 -10.99296 -10.78664 -10.57897 -10.51224 -10.10323 -9.74943 -9.64361 -8.30978 -6.37187 0.17074 0.18956 1.38259 1.39385 1.50961 1.56728 2.02030 2.35414 2.89035 3.04692 3.48949 3.55133 3.64791 3.72308 3.82172 4.04799 4.14775 4.16034 4.19656 4.27537 4.37423 4.52758 4.58080 4.68341 4.69610 4.78346 4.86412 4.89546 4.97696 5.00457 5.32519 5.34929 5.42914 5.48867 5.60725 5.76178 6.01380 6.23064 6.31482 6.46555 6.71236 6.99548 7.13276 7.27923 8.86006 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.004608 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.952105 B = 6074.833933 C = 6781.018428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.608 5.608 3 C 0.155 3.845 4 C -0.070 4.070 5 C -0.153 4.153 6 C 0.082 3.918 7 N -0.513 5.513 8 C 0.079 3.921 9 C -0.164 4.164 10 C 0.522 3.478 11 O -0.563 6.563 12 C 0.081 3.919 13 H 0.119 0.881 14 N -0.829 5.829 15 C -0.117 4.117 16 C -0.004 4.004 17 C -0.536 4.536 18 H 0.022 0.978 19 C 0.004 3.996 20 N -0.953 5.953 21 Si 0.954 3.046 22 H -0.269 1.269 23 H -0.287 1.287 24 H -0.234 1.234 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.170 0.830 31 H 0.180 0.820 32 H 0.164 0.836 33 H 0.128 0.872 34 H 0.344 0.656 35 H 0.354 0.646 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.023 0.977 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 16.799 -12.159 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.341 5.341 3 C 0.033 3.967 4 C -0.079 4.079 5 C -0.172 4.172 6 C -0.075 4.075 7 N -0.223 5.223 8 C -0.077 4.077 9 C -0.184 4.184 10 C 0.311 3.689 11 O -0.441 6.441 12 C -0.034 4.034 13 H 0.137 0.863 14 N -0.361 5.361 15 C -0.157 4.157 16 C -0.041 4.041 17 C -0.574 4.574 18 H 0.040 0.960 19 C -0.193 4.193 20 N -0.594 5.594 21 Si 0.777 3.223 22 H -0.194 1.194 23 H -0.213 1.213 24 H -0.157 1.157 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.147 0.853 29 H 0.102 0.898 30 H 0.187 0.813 31 H 0.197 0.803 32 H 0.181 0.819 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.269 17.390 -11.901 21.500 hybrid contribution -0.460 -1.546 0.596 1.719 sum 3.809 15.844 -11.304 19.833 Atomic orbital electron populations 1.22242 0.77211 1.04727 1.03914 1.47870 1.08271 1.04749 1.73211 1.20488 0.99232 0.85614 0.91377 1.20908 0.93816 0.95299 0.97883 1.22388 1.00675 0.98242 0.95940 1.23291 0.93989 0.97248 0.92924 1.67671 1.03840 1.11898 1.38896 1.22989 0.98385 0.93810 0.92476 1.22257 0.99234 1.00526 0.96421 1.20813 0.87619 0.86024 0.74486 1.90605 1.15249 1.87721 1.50567 1.21459 0.95904 0.89860 0.96202 0.86337 1.58771 1.10861 1.09368 1.57099 1.22033 0.99076 0.99442 0.95127 1.19484 0.95524 0.94033 0.95079 1.21409 1.30843 1.11091 0.94008 0.95960 1.26087 0.95456 0.99136 0.98641 1.70089 1.37074 1.29305 1.22900 0.85603 0.77587 0.78960 0.80156 1.19388 1.21324 1.15703 0.89660 0.91305 0.88630 0.85314 0.89824 0.81284 0.80318 0.81925 0.85364 0.84304 0.83054 0.94651 0.91878 0.94721 0.95905 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 9.85 127.77 1.26 2.25 16 2 N -0.61 -13.39 2.86 -851.14 -2.43 -15.82 16 3 C 0.15 2.84 5.58 85.63 0.48 3.32 16 4 C -0.07 -1.49 5.50 -19.67 -0.11 -1.59 16 5 C -0.15 -2.70 9.82 22.36 0.22 -2.48 16 6 C 0.08 1.72 11.18 84.68 0.95 2.67 16 7 N -0.51 -13.73 10.36 -195.84 -2.03 -15.76 16 8 C 0.08 2.05 11.18 84.68 0.95 3.00 16 9 C -0.16 -4.18 9.82 22.36 0.22 -3.97 16 10 C 0.52 15.51 6.93 87.66 0.61 16.12 16 11 O -0.56 -19.96 15.49 -3.05 -0.05 -20.01 16 12 C 0.08 2.40 2.37 44.17 0.10 2.51 16 13 H 0.12 3.03 7.21 -2.38 -0.02 3.02 16 14 N -0.83 -24.94 8.94 -171.80 -1.54 -26.48 16 15 C -0.12 -4.30 4.45 30.59 0.14 -4.17 16 16 C 0.00 -0.16 3.81 29.85 0.11 -0.05 16 17 C -0.54 -29.99 9.66 25.60 0.25 -29.74 16 18 H 0.02 1.41 7.99 -2.91 -0.02 1.38 16 19 C 0.00 0.20 5.47 84.65 0.46 0.67 16 20 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 21 Si 0.95 42.02 27.47 68.60 1.88 43.91 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.23 -9.08 6.54 99.48 0.65 -8.43 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.42 4.83 -2.39 -0.01 1.41 16 27 H 0.10 1.10 8.07 -2.39 -0.02 1.08 16 28 H 0.13 1.33 8.03 -2.39 -0.02 1.31 16 29 H 0.08 1.77 7.38 -2.39 -0.02 1.76 16 30 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.16 3.61 8.06 -2.92 -0.02 3.58 16 33 H 0.13 3.49 7.72 -2.91 -0.02 3.46 16 34 H 0.34 10.96 8.58 -89.69 -0.77 10.19 16 35 H 0.35 10.00 7.55 -89.70 -0.68 9.33 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 2.30 6.43 -2.39 -0.02 2.29 16 38 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 39 H 0.02 0.93 6.29 -2.39 -0.02 0.92 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -74.58 331.49 1.33 -73.25 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.44 Total: 31.28 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.63 Total: -11.46 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -5.70 Total: -116.96 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal Total: -74.58 1.33 -73.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709426225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.473 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds