Wall clock time and date at job start Mon Mar 30 2020 01:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00012 * 2 1 4 4 C 1.52999 * 109.47017 * 66.04438 * 3 2 1 5 5 C 1.50706 * 109.46818 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.61686 * 125.02645 * 5 4 3 7 7 C 1.38627 * 119.15663 * 179.70253 * 6 5 4 8 8 C 1.38669 * 118.42388 * 0.51169 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.50231 * 8 7 6 10 10 N 1.31856 * 119.61480 * 304.99563 * 5 4 3 11 11 C 1.46905 * 111.00410 * 236.04539 * 2 1 3 12 12 C 1.50701 * 109.46743 * 293.95424 * 11 2 1 13 13 O 1.21279 * 120.00518 * 0.02562 * 12 11 2 14 14 N 1.34776 * 119.99696 * 179.97438 * 12 11 2 15 15 C 1.46502 * 119.99973 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47167 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00021 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99846 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99697 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00065 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46765 * 90.00589 * 20 18 16 22 22 H 1.48494 * 109.47243 * 210.00083 * 20 18 16 23 23 H 1.48493 * 109.47398 * 330.00681 * 20 18 16 24 24 H 1.09004 * 109.46732 * 60.00122 * 1 2 3 25 25 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47397 * 300.00488 * 1 2 3 27 27 H 1.08994 * 109.46946 * 306.04043 * 3 2 1 28 28 H 1.09003 * 109.47014 * 186.04573 * 3 2 1 29 29 H 1.08998 * 109.47200 * 60.00303 * 4 3 2 30 30 H 1.08994 * 109.47201 * 300.00083 * 4 3 2 31 31 H 1.07998 * 120.41947 * 359.94797 * 6 5 4 32 32 H 1.08008 * 120.78691 * 180.26734 * 7 6 5 33 33 H 1.08002 * 120.42244 * 179.78749 * 8 7 6 34 34 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 35 35 H 1.09001 * 109.47141 * 53.95350 * 11 2 1 36 36 H 1.08996 * 109.47211 * 173.95457 * 11 2 1 37 37 H 0.96994 * 120.00362 * 0.02562 * 14 12 11 38 38 H 1.09001 * 109.47241 * 300.00688 * 15 14 12 39 39 H 1.09005 * 109.46731 * 60.00583 * 15 14 12 40 40 H 0.97003 * 119.99447 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1710 3.4646 1.3179 6 6 1.3144 4.5247 1.5487 7 6 1.8221 5.8147 1.5525 8 6 3.1762 5.9918 1.3123 9 6 3.9711 4.8837 1.0890 10 7 3.4547 3.6702 1.0981 11 6 1.9955 -0.7660 -1.1376 12 6 1.6370 -2.2204 -0.9728 13 8 1.0047 -2.5831 -0.0035 14 7 2.0182 -3.1180 -1.9031 15 6 1.6701 -4.5320 -1.7427 16 6 2.2102 -5.3178 -2.9097 17 1 2.7582 -4.8143 -3.6924 18 6 2.0046 -6.6795 -2.9781 19 7 2.4763 -7.3653 -3.9964 20 14 1.0573 -7.5503 -1.6240 21 1 -0.3885 -7.5657 -1.9626 22 1 1.5499 -8.9450 -1.4935 23 1 1.2573 -6.8324 -0.3396 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.5612 1.9273 -0.8309 28 1 3.0797 1.3444 -0.1082 29 1 2.0657 1.5016 2.1492 30 1 0.5472 2.0845 1.4265 31 1 0.2639 4.3499 1.7278 32 1 1.1773 6.6620 1.7342 33 1 3.6052 6.9830 1.3043 34 1 5.0274 5.0129 0.9053 35 1 1.5612 -0.3873 -2.0628 36 1 3.0798 -0.6611 -1.1756 37 1 2.5235 -2.8279 -2.6785 38 1 2.1051 -4.9106 -0.8177 39 1 0.5859 -4.6371 -1.7040 40 1 2.3320 -8.3233 -4.0443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754400171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:57 Heat of formation + Delta-G solvation = -21.247438 kcal Electronic energy + Delta-G solvation = -20299.660030 eV Core-core repulsion = 17113.413082 eV Total energy + Delta-G solvation = -3186.246949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13965 -40.68229 -38.16881 -36.08451 -34.39737 -34.18715 -33.19914 -30.94450 -29.86071 -28.55465 -26.46277 -24.44171 -24.14819 -23.08096 -21.72413 -21.38693 -19.13101 -17.85579 -17.73457 -17.21473 -17.14641 -16.81333 -16.39917 -16.09659 -15.93667 -15.61421 -15.17947 -14.88941 -14.46067 -14.40795 -14.10075 -14.02427 -13.80495 -13.56413 -13.04326 -12.97886 -12.76795 -12.61874 -12.50682 -12.35508 -11.92860 -11.82835 -11.65146 -10.91365 -10.77386 -10.69722 -10.29608 -9.89296 -9.85344 -9.28075 -8.39820 -6.46619 0.21078 0.41361 1.32818 1.35158 1.48268 1.76976 2.27436 2.30467 2.88198 2.95464 3.06623 3.45541 3.81171 3.95195 4.05311 4.13093 4.21192 4.28733 4.29303 4.36519 4.38599 4.56852 4.63106 4.64281 4.77524 4.80530 4.86829 5.01944 5.04437 5.07473 5.21582 5.27406 5.31416 5.32300 5.56391 5.83974 5.91569 6.11155 6.12527 6.54507 6.89067 7.11622 7.16620 7.46283 8.74886 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048528 B = 0.002582 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.842753 B =10840.937737 C =11165.887681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.543 5.543 3 C 0.075 3.925 4 C -0.061 4.061 5 C 0.114 3.886 6 C -0.176 4.176 7 C -0.077 4.077 8 C -0.178 4.178 9 C 0.084 3.916 10 N -0.513 5.513 11 C 0.047 3.953 12 C 0.500 3.500 13 O -0.578 6.578 14 N -0.709 5.709 15 C 0.234 3.766 16 C -0.546 4.546 17 H 0.059 0.941 18 C 0.025 3.975 19 N -0.931 5.931 20 Si 0.939 3.061 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.262 1.262 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.408 0.592 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 29.574 9.809 31.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.267 5.267 3 C -0.052 4.052 4 C -0.099 4.099 5 C -0.024 4.024 6 C -0.196 4.196 7 C -0.103 4.103 8 C -0.198 4.198 9 C -0.073 4.073 10 N -0.223 5.223 11 C -0.084 4.084 12 C 0.287 3.713 13 O -0.458 6.458 14 N -0.359 5.359 15 C 0.110 3.890 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.176 4.176 19 N -0.570 5.570 20 Si 0.762 3.238 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.186 1.186 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.188 0.812 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.243 0.757 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.432 28.172 10.684 30.164 hybrid contribution -0.735 0.219 -0.689 1.031 sum -2.166 28.391 9.996 30.177 Atomic orbital electron populations 1.22531 0.86539 1.02454 1.01241 1.61561 1.09144 1.13775 1.42222 1.21951 1.00548 0.86205 0.96526 1.20472 1.01377 0.89730 0.98316 1.21336 0.89472 0.96308 0.95260 1.22261 1.02010 0.93262 1.02037 1.22002 0.95994 0.97731 0.94565 1.22485 0.94883 1.01412 1.01002 1.23194 1.01539 0.87454 0.95081 1.67456 1.14449 1.26529 1.13890 1.21936 1.03226 0.89000 0.94250 1.21204 0.78957 0.89128 0.81983 1.90598 1.41738 1.81623 1.31816 1.46033 1.56500 1.08138 1.25275 1.19053 0.94843 0.79203 0.95865 1.21307 1.36596 0.93461 1.07044 0.92262 1.25622 0.95997 0.98068 0.97865 1.69989 1.46638 1.08626 1.31761 0.85835 0.79527 0.78262 0.80129 1.18922 1.19820 1.18585 0.94847 0.92364 0.89777 0.94344 0.90330 0.90400 0.88812 0.83053 0.82079 0.82131 0.81177 0.89844 0.86125 0.75656 0.97189 0.97121 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.96 127.69 1.14 1.66 16 2 N -0.54 -14.52 4.50 -927.04 -4.17 -18.69 16 3 C 0.08 1.62 4.82 86.30 0.42 2.03 16 4 C -0.06 -1.17 5.54 29.85 0.17 -1.00 16 5 C 0.11 2.14 6.18 42.55 0.26 2.40 16 6 C -0.18 -2.43 9.71 22.36 0.22 -2.21 16 7 C -0.08 -0.82 10.18 22.47 0.23 -0.59 16 8 C -0.18 -1.93 10.11 22.36 0.23 -1.70 16 9 C 0.08 1.28 11.18 84.67 0.95 2.23 16 10 N -0.51 -10.72 9.88 -183.88 -1.82 -12.53 16 11 C 0.05 1.27 5.45 85.56 0.47 1.73 16 12 C 0.50 18.99 7.52 87.66 0.66 19.65 16 13 O -0.58 -26.41 14.33 -3.03 -0.04 -26.45 16 14 N -0.71 -28.76 5.55 -466.78 -2.59 -31.35 16 15 C 0.23 11.69 4.50 85.63 0.38 12.08 16 16 C -0.55 -30.55 9.83 25.60 0.25 -30.29 16 17 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 18 C 0.02 1.41 5.47 84.65 0.46 1.88 16 19 N -0.93 -56.13 13.96 21.45 0.30 -55.83 16 20 Si 0.94 44.72 27.47 68.60 1.88 46.61 16 21 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 24 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 1.90 5.82 -2.39 -0.01 1.89 16 26 H 0.08 1.79 6.47 -2.39 -0.02 1.77 16 27 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 28 H 0.08 1.81 7.74 -2.39 -0.02 1.79 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.47 6.28 -2.39 -0.02 1.46 16 31 H 0.15 1.42 7.95 -2.91 -0.02 1.40 16 32 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 36 H 0.12 2.81 7.93 -2.39 -0.02 2.80 16 37 H 0.41 14.40 8.32 -92.71 -0.77 13.63 16 38 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 39 H 0.01 0.56 7.57 -2.38 -0.02 0.54 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -73.02 334.02 -0.39 -73.42 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.21 Total: 17.00 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 5.83 Total: 7.85 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -8.28 Total: -118.41 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.04 Total: -26.45 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -73.02 -0.39 -73.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754400171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.168 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds