Wall clock time and date at job start Mon Mar 30 2020 02:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47413 * 2 1 4 4 C 1.50697 * 109.47028 * 120.00640 * 2 1 3 5 5 N 1.28021 * 119.99379 * 239.99707 * 4 2 1 6 6 N 1.40106 * 119.99587 * 180.02562 * 5 4 2 7 7 C 1.38579 * 119.99569 * 180.02562 * 6 5 4 8 8 C 1.39700 * 120.48462 * 179.97438 * 7 6 5 9 9 C 1.38104 * 118.48420 * 179.97438 * 8 7 6 10 10 N 1.32512 * 119.29497 * 0.02562 * 9 8 7 11 11 C 1.32482 * 120.93791 * 359.97438 * 10 9 8 12 12 N 1.38401 * 119.17246 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00242 * 359.97438 * 12 11 10 14 14 C 1.46502 * 119.99696 * 180.02562 * 12 11 10 15 15 N 1.32450 * 121.64905 * 0.27508 * 11 10 9 16 16 C 1.53009 * 109.46962 * 240.00223 * 2 1 3 17 17 C 1.50703 * 109.46831 * 64.99902 * 16 2 1 18 18 H 1.07997 * 120.00072 * 0.02562 * 17 16 2 19 19 C 1.37878 * 119.99626 * 179.97438 * 17 16 2 20 20 N 1.31521 * 119.99778 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00250 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47402 * 90.00156 * 21 19 17 23 23 H 1.48499 * 109.47193 * 210.00158 * 21 19 17 24 24 H 1.48501 * 109.47003 * 329.99747 * 21 19 17 25 25 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47176 * 299.99306 * 1 2 3 27 27 H 1.08999 * 109.47345 * 59.99859 * 1 2 3 28 28 H 1.07998 * 120.00351 * 59.99985 * 4 2 1 29 29 H 0.96999 * 119.99929 * 359.97438 * 6 5 4 30 30 H 1.07998 * 120.75833 * 359.97438 * 8 7 6 31 31 H 1.08007 * 120.35029 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47391 * 270.00412 * 13 12 11 33 33 H 1.09001 * 109.46813 * 150.00468 * 13 12 11 34 34 H 1.09004 * 109.47041 * 30.00595 * 13 12 11 35 35 H 1.08994 * 109.47354 * 269.99704 * 14 12 11 36 36 H 1.09002 * 109.47278 * 29.99749 * 14 12 11 37 37 H 1.09006 * 109.46998 * 149.99270 * 14 12 11 38 38 H 1.09002 * 109.47016 * 184.99751 * 16 2 1 39 39 H 1.08995 * 109.46903 * 305.00167 * 16 2 1 40 40 H 0.97001 * 119.99613 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7683 -0.0884 2.0730 6 7 3.2358 -0.7491 3.2167 7 6 4.0321 -0.0755 4.1291 8 6 4.5034 -0.7241 5.2731 9 6 5.2943 -0.0136 6.1545 10 7 5.5809 1.2533 5.8920 11 6 5.1201 1.8434 4.7990 12 7 5.4425 3.1681 4.5607 13 6 6.2829 3.9000 5.5116 14 6 4.9424 3.8387 3.3580 15 7 4.3548 1.1989 3.9312 16 6 2.0400 -0.7212 -1.2494 17 6 1.6412 0.0572 -2.4766 18 1 1.0806 0.9747 -2.3756 19 6 1.9931 -0.4016 -3.7283 20 7 1.6455 0.2780 -4.7994 21 14 2.9634 -1.9881 -3.9030 22 1 2.0243 -3.1324 -4.0204 23 1 3.8124 -1.9178 -5.1193 24 1 3.8251 -2.1754 -2.7081 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.7714 -1.7445 1.4012 29 1 3.0014 -1.6777 3.3701 30 1 4.2548 -1.7577 5.4639 31 1 5.6753 -0.4855 7.0481 32 1 5.6521 4.3781 6.2610 33 1 6.8555 4.6602 4.9801 34 1 6.9665 3.2063 6.0011 35 1 5.6571 3.7084 2.5455 36 1 3.9841 3.4049 3.0720 37 1 4.8136 4.9018 3.5617 38 1 3.1263 -0.7994 -1.2057 39 1 1.6053 -1.7197 -1.2953 40 1 1.8928 -0.0449 -5.6800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766022163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:42 Heat of formation + Delta-G solvation = 103.114056 kcal Electronic energy + Delta-G solvation = -20585.170930 eV Core-core repulsion = 17436.609452 eV Total energy + Delta-G solvation = -3148.561478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80463 -37.80014 -36.66251 -35.32262 -33.39390 -32.29189 -31.55406 -29.48159 -28.07871 -27.52467 -25.77132 -24.40924 -23.10150 -21.92566 -21.30086 -19.25940 -17.99660 -17.84188 -16.81501 -16.25591 -15.82025 -15.69815 -15.28768 -14.41321 -14.30772 -14.19759 -13.84985 -13.46257 -13.33966 -12.98110 -12.60732 -12.55456 -12.32030 -11.98819 -11.95725 -11.34420 -11.11453 -10.84946 -10.77899 -10.67241 -10.36611 -10.14377 -9.88542 -9.76902 -9.67211 -9.17171 -8.91868 -8.55408 -8.23715 -7.75608 -6.05652 -4.03596 1.31819 1.38392 2.48416 2.59663 2.80342 3.28733 3.37326 3.40244 4.08945 4.22916 4.43509 4.62571 4.82673 5.10145 5.15725 5.22492 5.27430 5.27989 5.35760 5.37033 5.64290 5.67457 5.72199 5.87001 5.93562 6.01018 6.14055 6.17364 6.40050 6.65183 6.75829 6.81191 6.87341 6.95459 7.18935 7.23310 7.33475 7.49869 7.74760 8.28154 8.50937 8.60487 8.99141 9.56291 11.07434 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.003494 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.835192 B = 8010.709480 C = 8469.343160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.028 4.028 3 H 0.085 0.915 4 C 0.090 3.910 5 N -0.240 5.240 6 N -0.570 5.570 7 C 0.497 3.503 8 C -0.348 4.348 9 C 0.213 3.787 10 N -0.608 5.608 11 C 0.593 3.407 12 N -0.594 5.594 13 C 0.106 3.894 14 C 0.102 3.898 15 N -0.586 5.586 16 C -0.003 4.003 17 C -0.515 4.515 18 H 0.077 0.923 19 C 0.068 3.932 20 N -0.902 5.902 21 Si 0.876 3.124 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.267 1.267 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.392 0.608 30 H 0.136 0.864 31 H 0.165 0.835 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.018 0.982 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 0.202 21.635 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.049 4.049 3 H 0.103 0.897 4 C -0.125 4.125 5 N -0.042 5.042 6 N -0.292 5.292 7 C 0.251 3.749 8 C -0.380 4.380 9 C 0.049 3.951 10 N -0.335 5.335 11 C 0.236 3.764 12 N -0.311 5.311 13 C -0.037 4.037 14 C -0.041 4.041 15 N -0.317 5.317 16 C -0.041 4.041 17 C -0.553 4.553 18 H 0.095 0.905 19 C -0.133 4.133 20 N -0.541 5.541 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.192 1.192 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.233 0.767 30 H 0.154 0.846 31 H 0.182 0.818 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.547 2.263 21.456 22.547 hybrid contribution -0.112 -3.127 -0.135 3.132 sum 6.435 -0.863 21.321 22.287 Atomic orbital electron populations 1.21686 0.94048 1.01419 1.01593 1.20106 0.95642 1.00072 0.89091 0.89694 1.26680 0.93030 0.97844 0.94959 1.74555 1.11092 1.24071 0.94444 1.45549 1.51653 1.12006 1.19993 1.17733 0.84651 0.87454 0.85017 1.21703 1.13304 1.03512 0.99485 1.22471 0.88645 0.87923 0.96087 1.67888 1.31432 1.12594 1.21540 1.18936 0.85943 0.86648 0.84869 1.45860 1.53677 1.06573 1.24985 1.21572 0.94046 0.96149 0.91930 1.21651 1.01066 0.96096 0.85306 1.67391 1.22308 1.08654 1.33372 1.19604 0.96254 0.95842 0.92422 1.21051 1.35718 1.09742 0.88797 0.90484 1.24988 0.95511 0.96910 0.95918 1.69905 1.46921 1.39197 0.98045 0.86832 0.80684 0.84323 0.77763 1.20296 1.21398 1.19151 0.93278 0.94398 0.90300 0.88405 0.76737 0.84570 0.81838 0.93311 0.91545 0.90227 0.92946 0.89571 0.91621 0.96419 0.96669 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.98 37.16 0.33 -1.87 16 2 C -0.03 -0.53 2.75 -91.77 -0.25 -0.78 16 3 H 0.08 1.74 8.11 -51.93 -0.42 1.32 16 4 C 0.09 1.48 9.66 -13.87 -0.13 1.35 16 5 N -0.24 -4.17 10.99 32.67 0.36 -3.82 16 6 N -0.57 -8.29 6.40 31.25 0.20 -8.09 16 7 C 0.50 7.48 7.64 -154.76 -1.18 6.29 16 8 C -0.35 -4.03 10.03 -39.08 -0.39 -4.42 16 9 C 0.21 2.37 11.28 -17.31 -0.20 2.17 16 10 N -0.61 -8.29 9.11 -14.02 -0.13 -8.42 16 11 C 0.59 9.04 8.18 -322.89 -2.64 6.40 16 12 N -0.59 -7.73 3.37 -191.91 -0.65 -8.37 16 13 C 0.11 1.00 10.44 59.85 0.62 1.63 16 14 C 0.10 1.21 10.44 59.85 0.62 1.84 16 15 N -0.59 -9.88 8.70 -13.14 -0.11 -9.99 16 16 C 0.00 -0.06 3.50 -27.88 -0.10 -0.16 16 17 C -0.52 -14.00 8.96 -34.44 -0.31 -14.30 16 18 H 0.08 2.23 7.30 -52.49 -0.38 1.85 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 21 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 28 H 0.10 1.33 8.00 -52.49 -0.42 0.91 16 29 H 0.39 4.36 8.65 -182.59 -1.58 2.78 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.48 8.07 -51.93 -0.42 0.07 16 34 H 0.08 0.79 7.33 -51.93 -0.38 0.41 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.22 7.33 -51.93 -0.38 0.84 16 37 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 39 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -33.31 339.65 -10.06 -43.37 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.23 Total: 0.04 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -3.72 Total: -0.02 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: 0.44 Total: -65.13 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.31 -10.06 -43.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766022163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.481 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds