Wall clock time and date at job start Mon Mar 30 2020 02:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47413 * 2 1 4 4 C 1.50697 * 109.47028 * 120.00640 * 2 1 3 5 5 N 1.28021 * 119.99379 * 239.99707 * 4 2 1 6 6 N 1.40106 * 119.99587 * 180.02562 * 5 4 2 7 7 C 1.38579 * 119.99569 * 180.02562 * 6 5 4 8 8 C 1.39700 * 120.48462 * 179.97438 * 7 6 5 9 9 C 1.38104 * 118.48420 * 179.97438 * 8 7 6 10 10 N 1.32512 * 119.29497 * 0.02562 * 9 8 7 11 11 C 1.32482 * 120.93791 * 359.97438 * 10 9 8 12 12 N 1.38401 * 119.17246 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00242 * 359.97438 * 12 11 10 14 14 C 1.46502 * 119.99696 * 180.02562 * 12 11 10 15 15 N 1.32450 * 121.64905 * 0.27508 * 11 10 9 16 16 C 1.53009 * 109.46962 * 240.00223 * 2 1 3 17 17 C 1.50703 * 109.46831 * 64.99902 * 16 2 1 18 18 H 1.07997 * 120.00072 * 0.02562 * 17 16 2 19 19 C 1.37878 * 119.99626 * 179.97438 * 17 16 2 20 20 N 1.31521 * 119.99778 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00250 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47402 * 90.00156 * 21 19 17 23 23 H 1.48499 * 109.47193 * 210.00158 * 21 19 17 24 24 H 1.48501 * 109.47003 * 329.99747 * 21 19 17 25 25 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47176 * 299.99306 * 1 2 3 27 27 H 1.08999 * 109.47345 * 59.99859 * 1 2 3 28 28 H 1.07998 * 120.00351 * 59.99985 * 4 2 1 29 29 H 0.96999 * 119.99929 * 359.97438 * 6 5 4 30 30 H 1.07998 * 120.75833 * 359.97438 * 8 7 6 31 31 H 1.08007 * 120.35029 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47391 * 270.00412 * 13 12 11 33 33 H 1.09001 * 109.46813 * 150.00468 * 13 12 11 34 34 H 1.09004 * 109.47041 * 30.00595 * 13 12 11 35 35 H 1.08994 * 109.47354 * 269.99704 * 14 12 11 36 36 H 1.09002 * 109.47278 * 29.99749 * 14 12 11 37 37 H 1.09006 * 109.46998 * 149.99270 * 14 12 11 38 38 H 1.09002 * 109.47016 * 184.99751 * 16 2 1 39 39 H 1.08995 * 109.46903 * 305.00167 * 16 2 1 40 40 H 0.97001 * 119.99613 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7683 -0.0884 2.0730 6 7 3.2358 -0.7491 3.2167 7 6 4.0321 -0.0755 4.1291 8 6 4.5034 -0.7241 5.2731 9 6 5.2943 -0.0136 6.1545 10 7 5.5809 1.2533 5.8920 11 6 5.1201 1.8434 4.7990 12 7 5.4425 3.1681 4.5607 13 6 6.2829 3.9000 5.5116 14 6 4.9424 3.8387 3.3580 15 7 4.3548 1.1989 3.9312 16 6 2.0400 -0.7212 -1.2494 17 6 1.6412 0.0572 -2.4766 18 1 1.0806 0.9747 -2.3756 19 6 1.9931 -0.4016 -3.7283 20 7 1.6455 0.2780 -4.7994 21 14 2.9634 -1.9881 -3.9030 22 1 2.0243 -3.1324 -4.0204 23 1 3.8124 -1.9178 -5.1193 24 1 3.8251 -2.1754 -2.7081 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.7714 -1.7445 1.4012 29 1 3.0014 -1.6777 3.3701 30 1 4.2548 -1.7577 5.4639 31 1 5.6753 -0.4855 7.0481 32 1 5.6521 4.3781 6.2610 33 1 6.8555 4.6602 4.9801 34 1 6.9665 3.2063 6.0011 35 1 5.6571 3.7084 2.5455 36 1 3.9841 3.4049 3.0720 37 1 4.8136 4.9018 3.5617 38 1 3.1263 -0.7994 -1.2057 39 1 1.6053 -1.7197 -1.2953 40 1 1.8928 -0.0449 -5.6800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766022163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:42 Heat of formation + Delta-G solvation = 83.799207 kcal Electronic energy + Delta-G solvation = -20586.008485 eV Core-core repulsion = 17436.609452 eV Total energy + Delta-G solvation = -3149.399033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79452 -39.01414 -37.72530 -36.67601 -34.81927 -33.94515 -32.77672 -30.62587 -29.35574 -28.88588 -26.70434 -25.85470 -24.40800 -22.90963 -22.78838 -20.70530 -19.24235 -18.98002 -18.58880 -17.45733 -16.83213 -16.67696 -16.27394 -16.16654 -15.33728 -15.30907 -15.16281 -14.91537 -14.62898 -14.39474 -14.15667 -13.55490 -13.42298 -13.13330 -12.97197 -12.87339 -12.83916 -12.50772 -12.00020 -11.78910 -11.75367 -11.67236 -11.46237 -11.31830 -11.15438 -10.94555 -10.71171 -9.96594 -9.34448 -8.71257 -8.23410 -6.25975 0.30032 0.41938 1.37204 1.37633 1.41070 1.47208 1.51235 1.84420 2.39743 3.08464 3.12104 3.25908 3.70750 3.92078 3.93285 4.15303 4.37463 4.43048 4.44881 4.49541 4.50999 4.54278 4.62146 4.79318 4.91749 4.94888 4.97051 5.02670 5.10262 5.25548 5.30875 5.37631 5.49269 5.63982 5.71115 5.82929 5.94173 6.23100 6.34645 6.51004 6.81323 7.19985 7.37257 7.57575 8.93059 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.003494 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.835192 B = 8010.709480 C = 8469.343160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.023 4.023 3 H 0.057 0.943 4 C 0.092 3.908 5 N -0.269 5.269 6 N -0.563 5.563 7 C 0.468 3.532 8 C -0.336 4.336 9 C 0.211 3.789 10 N -0.614 5.614 11 C 0.570 3.430 12 N -0.601 5.601 13 C 0.106 3.894 14 C 0.106 3.894 15 N -0.625 5.625 16 C 0.002 3.998 17 C -0.518 4.518 18 H 0.040 0.960 19 C 0.005 3.995 20 N -0.952 5.952 21 Si 0.945 3.055 22 H -0.261 1.261 23 H -0.290 1.290 24 H -0.252 1.252 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.134 0.866 29 H 0.410 0.590 30 H 0.172 0.828 31 H 0.209 0.791 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.009 0.991 39 H 0.034 0.966 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 -2.035 24.283 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.044 4.044 3 H 0.075 0.925 4 C -0.123 4.123 5 N -0.071 5.071 6 N -0.289 5.289 7 C 0.224 3.776 8 C -0.367 4.367 9 C 0.047 3.953 10 N -0.341 5.341 11 C 0.213 3.787 12 N -0.319 5.319 13 C -0.036 4.036 14 C -0.037 4.037 15 N -0.357 5.357 16 C -0.036 4.036 17 C -0.556 4.556 18 H 0.059 0.941 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.769 3.231 22 H -0.185 1.185 23 H -0.216 1.216 24 H -0.176 1.176 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.151 0.849 29 H 0.253 0.747 30 H 0.190 0.810 31 H 0.225 0.775 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.028 0.972 39 H 0.052 0.948 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.541 0.020 24.142 25.293 hybrid contribution -0.404 -2.321 -0.845 2.503 sum 7.137 -2.301 23.297 24.474 Atomic orbital electron populations 1.21591 0.92708 1.02592 1.01132 1.19837 0.96797 0.98451 0.89328 0.92492 1.26325 0.93211 0.98983 0.93775 1.74390 1.11057 1.26086 0.95604 1.45355 1.51748 1.12702 1.19085 1.18255 0.85527 0.87585 0.86279 1.22062 1.11968 1.04935 0.97701 1.23286 0.87771 0.87088 0.97144 1.67989 1.31433 1.13874 1.20839 1.19299 0.86454 0.87538 0.85405 1.46174 1.53893 1.06309 1.25514 1.21715 0.93843 0.96209 0.91812 1.21589 0.99316 0.97472 0.85290 1.67329 1.23534 1.10066 1.34790 1.19501 0.95751 0.96323 0.92063 1.21383 1.34488 1.08849 0.90872 0.94142 1.25929 0.96869 1.00836 0.95545 1.70066 1.48990 1.41544 0.98717 0.85738 0.79414 0.79997 0.77965 1.18539 1.21622 1.17606 0.91216 0.92418 0.93185 0.84863 0.74685 0.81029 0.77462 0.92498 0.89321 0.90696 0.93587 0.92463 0.88635 0.97227 0.94756 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.98 71.98 0.65 -3.46 16 2 C -0.02 -0.87 2.75 -11.54 -0.03 -0.90 16 3 H 0.06 2.44 8.11 -2.39 -0.02 2.42 16 4 C 0.09 2.88 9.66 88.66 0.86 3.73 16 5 N -0.27 -9.15 10.99 -50.46 -0.55 -9.70 16 6 N -0.56 -15.41 6.40 -55.04 -0.35 -15.76 16 7 C 0.47 13.43 7.64 133.18 1.02 14.44 16 8 C -0.34 -6.75 10.03 22.59 0.23 -6.52 16 9 C 0.21 4.03 11.28 84.56 0.95 4.99 16 10 N -0.61 -15.73 9.11 -198.26 -1.81 -17.53 16 11 C 0.57 17.14 8.18 261.51 2.14 19.28 16 12 N -0.60 -15.43 3.37 -761.07 -2.57 -17.99 16 13 C 0.11 1.87 10.44 127.77 1.33 3.20 16 14 C 0.11 2.57 10.44 127.77 1.33 3.91 16 15 N -0.63 -21.05 8.70 -195.48 -1.70 -22.75 16 16 C 0.00 0.10 3.50 29.85 0.10 0.20 16 17 C -0.52 -28.92 8.96 25.60 0.23 -28.69 16 18 H 0.04 2.48 7.30 -2.91 -0.02 2.46 16 19 C 0.00 0.27 5.47 84.65 0.46 0.73 16 20 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 21 Si 0.94 43.65 27.47 68.60 1.88 45.54 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 24 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 25 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.95 6.95 -2.39 -0.02 1.93 16 28 H 0.13 3.15 8.00 -2.91 -0.02 3.12 16 29 H 0.41 7.95 8.65 -213.32 -1.84 6.11 16 30 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.13 8.07 -2.39 -0.02 1.11 16 34 H 0.07 1.39 7.33 -2.38 -0.02 1.37 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.71 7.33 -2.39 -0.02 1.70 16 37 H 0.10 1.66 8.07 -2.38 -0.02 1.64 16 38 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 39 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 40 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -75.47 339.65 3.61 -71.86 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -0.86 Total: 14.40 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 9.27 Total: 10.91 kcal Atomic # 7 Polarization: -136.03 SS G_CDS: -6.68 Total: -142.71 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.54 kcal Total: -75.47 3.61 -71.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766022163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.655 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds