Wall clock time and date at job start Mon Mar 30 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35913 * 117.00188 * 2 1 4 4 C 1.39138 * 120.47538 * 180.02562 * 3 2 1 5 5 C 1.38536 * 118.37573 * 179.97438 * 4 3 2 6 6 C 1.38255 * 119.21529 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.54947 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47192 * 94.99931 * 7 6 5 9 9 C 1.46903 * 111.00120 * 294.30319 * 8 7 6 10 10 C 1.53236 * 109.34286 * 172.74593 * 9 8 7 11 11 N 1.47080 * 108.52116 * 53.82417 * 10 9 8 12 12 C 1.36941 * 120.88005 * 128.79475 * 11 10 9 13 13 H 1.08004 * 119.99782 * 206.65394 * 12 11 10 14 14 C 1.38814 * 120.00005 * 26.65683 * 12 11 10 15 15 N 1.31610 * 119.99903 * 17.03482 * 14 12 11 16 16 Si 1.86799 * 119.99948 * 197.03629 * 14 12 11 17 17 H 1.48502 * 109.47135 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47226 * 119.99952 * 16 14 12 19 19 H 1.48504 * 109.46893 * 240.00002 * 16 14 12 20 20 C 1.47076 * 118.24140 * 308.81788 * 11 10 9 21 21 C 1.46898 * 111.00118 * 169.99563 * 8 7 6 22 22 N 1.31846 * 120.89182 * 359.74246 * 6 5 4 23 23 C 1.31836 * 121.77870 * 0.52579 * 22 6 5 24 24 H 1.08996 * 109.47411 * 299.99719 * 1 2 3 25 25 H 1.08995 * 109.46992 * 60.00468 * 1 2 3 26 26 H 1.09001 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.80967 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.38825 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.46756 * 214.99581 * 7 6 5 30 30 H 1.08995 * 109.47465 * 334.99698 * 7 6 5 31 31 H 1.09002 * 109.49009 * 292.70419 * 9 8 7 32 32 H 1.08997 * 109.49190 * 52.78061 * 9 8 7 33 33 H 1.09000 * 109.62960 * 294.11917 * 10 9 8 34 34 H 1.08996 * 109.79080 * 173.62866 * 10 9 8 35 35 H 0.96996 * 120.00352 * 180.02562 * 15 14 12 36 36 H 1.09008 * 109.62827 * 291.47496 * 20 11 10 37 37 H 1.09003 * 109.79373 * 170.98691 * 20 11 10 38 38 H 1.08999 * 109.49369 * 307.21198 * 21 8 7 39 39 H 1.08996 * 109.49314 * 67.27151 * 21 8 7 40 40 H 1.08002 * 119.65845 * 179.74882 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2953 -0.0005 5 6 4.0182 2.5518 -0.0011 6 6 3.2079 3.6720 -0.0016 7 6 3.8345 5.0426 -0.0027 8 7 3.9278 5.5372 -1.3828 9 6 4.8575 4.7194 -2.1734 10 6 4.7902 5.1510 -3.6421 11 7 5.0224 6.6016 -3.7139 12 6 5.9602 7.1220 -4.5653 13 1 6.4322 8.0662 -4.3369 14 6 6.3043 6.4360 -5.7220 15 7 5.5209 5.4822 -6.1790 16 14 7.8791 6.8664 -6.6298 17 1 8.5775 7.9653 -5.9157 18 1 8.7611 5.6730 -6.6842 19 1 7.5508 7.3028 -8.0108 20 6 4.2210 7.4784 -2.8467 21 6 4.3107 6.9552 -1.4091 22 7 1.8944 3.5573 -0.0067 23 6 1.3002 2.3805 -0.0011 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0432 0.4029 -0.0005 28 1 5.0932 2.6551 -0.0019 29 1 3.2201 5.7234 0.5864 30 1 4.8327 4.9862 0.4313 31 1 5.8720 4.8581 -1.7997 32 1 4.5791 3.6689 -2.0898 33 1 3.8058 4.9174 -4.0477 34 1 5.5559 4.6289 -4.2157 35 1 5.7614 5.0025 -6.9871 36 1 3.1818 7.4684 -3.1758 37 1 4.6092 8.4960 -2.8908 38 1 3.6357 7.5261 -0.7715 39 1 5.3326 7.0628 -1.0457 40 1 0.2215 2.3264 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775981701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:22 Heat of formation + Delta-G solvation = 37.949965 kcal Electronic energy + Delta-G solvation = -21553.490282 eV Core-core repulsion = 18369.810326 eV Total energy + Delta-G solvation = -3183.679957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71254 -38.64131 -37.58893 -34.45151 -32.44384 -31.81635 -30.33233 -29.87219 -27.93409 -27.00009 -24.82166 -23.49136 -22.56055 -22.45719 -21.29005 -19.04263 -18.25732 -17.08959 -16.74305 -16.03186 -15.97533 -15.23667 -14.61551 -14.49312 -14.35747 -14.03519 -13.60434 -13.47308 -13.32417 -13.07889 -12.88147 -12.77460 -12.13354 -11.78137 -11.67652 -11.51525 -11.35192 -11.03830 -10.73535 -10.42563 -10.25737 -10.02327 -9.79700 -9.66563 -9.54091 -9.34689 -8.48182 -8.39783 -7.74856 -6.62526 -5.74583 -3.15668 1.10017 1.28727 3.01808 3.38899 3.46627 3.48939 3.71400 4.35765 4.51220 4.57692 4.59008 4.76016 4.87673 4.91150 5.03620 5.21487 5.36183 5.41963 5.49071 5.50718 5.56883 5.74162 5.94429 5.95812 6.00306 6.10719 6.20974 6.27509 6.37137 6.46853 6.58386 6.74753 6.99201 7.07499 7.29082 7.62959 7.69856 7.75308 7.85869 8.06667 8.46979 9.24768 9.88509 10.47464 11.34227 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025592 B = 0.004025 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.835740 B = 6955.015065 C = 7500.538673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.067 3.933 4 C -0.107 4.107 5 C -0.125 4.125 6 C 0.113 3.887 7 C 0.105 3.895 8 N -0.524 5.524 9 C 0.033 3.967 10 C 0.180 3.820 11 N -0.596 5.596 12 C -0.250 4.250 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.903 5.903 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.149 3.851 21 C 0.046 3.954 22 N -0.430 5.430 23 C 0.021 3.979 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.088 0.912 35 H 0.253 0.747 36 H 0.026 0.974 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 -8.799 14.998 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.019 3.981 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.026 4.026 7 C -0.023 4.023 8 N -0.249 5.249 9 C -0.096 4.096 10 C 0.053 3.947 11 N -0.319 5.319 12 C -0.380 4.380 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.548 5.548 16 Si 0.731 3.269 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.217 1.217 20 C 0.022 3.978 21 C -0.083 4.083 22 N -0.140 5.140 23 C -0.138 4.138 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.817 -8.359 14.610 18.559 hybrid contribution 1.771 -0.573 -0.239 1.877 sum -6.046 -8.932 14.372 17.969 Atomic orbital electron populations 1.23092 0.78177 1.04120 1.01644 1.86054 1.21527 1.26283 1.88835 1.20060 0.93266 0.85670 0.99061 1.20864 0.91644 0.98730 1.02133 1.21899 1.01494 0.91820 0.99291 1.21047 0.88884 0.95514 0.97156 1.20891 0.97914 0.91402 0.92117 1.61909 1.51060 1.03087 1.08877 1.22961 0.92379 0.96058 0.98204 1.20829 1.00273 0.84557 0.88993 1.44138 1.41867 1.01091 1.44808 1.19248 1.13117 1.06243 0.99387 0.91580 1.25024 0.98905 0.99731 0.96133 1.70043 1.35678 1.26396 1.22688 0.86236 0.83474 0.77691 0.79465 1.20308 1.21625 1.21737 1.20972 0.94972 0.93666 0.88161 1.22628 0.97707 0.87845 1.00102 1.67341 1.11791 1.26067 1.08804 1.22880 1.00358 0.87151 1.03382 0.92522 0.92291 0.88100 0.84168 0.84258 0.89644 0.93877 0.95647 0.92236 0.95772 0.89403 0.93717 0.95649 0.92569 0.91820 0.95345 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.54 10.51 -19.47 -0.20 -3.74 16 3 C 0.07 0.85 6.71 -39.07 -0.26 0.59 16 4 C -0.11 -1.34 10.13 -39.14 -0.40 -1.73 16 5 C -0.12 -1.65 8.16 -39.47 -0.32 -1.97 16 6 C 0.11 1.72 5.64 -82.58 -0.47 1.25 16 7 C 0.11 1.61 5.29 -4.97 -0.03 1.58 16 8 N -0.52 -9.80 4.62 -235.76 -1.09 -10.89 16 9 C 0.03 0.67 5.38 -3.70 -0.02 0.65 16 10 C 0.18 4.50 5.43 -3.60 -0.02 4.48 16 11 N -0.60 -15.50 3.04 -172.01 -0.52 -16.02 16 12 C -0.25 -7.01 9.63 -15.06 -0.15 -7.15 16 13 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 14 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 15 N -0.90 -26.74 11.15 55.49 0.62 -26.12 16 16 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 C 0.15 3.27 6.69 -3.60 -0.02 3.24 16 21 C 0.05 0.85 5.62 -3.70 -0.02 0.83 16 22 N -0.43 -6.79 10.27 -9.35 -0.10 -6.88 16 23 C 0.02 0.28 10.22 -17.38 -0.18 0.10 16 24 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 25 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 28 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 29 H 0.09 1.23 7.97 -51.93 -0.41 0.82 16 30 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.13 5.97 -51.93 -0.31 0.82 16 33 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 2.41 6.11 -51.93 -0.32 2.10 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 38 H 0.06 1.01 7.99 -51.93 -0.41 0.60 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.16 1.61 6.32 -52.49 -0.33 1.28 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -32.52 322.87 -8.35 -40.87 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.92 Total: -1.91 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.97 Total: 2.96 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -1.09 Total: -59.92 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.20 Total: -3.74 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.52 -8.35 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775981701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.823 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds