Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99783 * 2 1 4 4 H 1.48496 * 109.47203 * 239.99863 * 3 2 1 5 5 H 1.48500 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47219 * 119.99585 * 3 2 1 7 7 C 1.37870 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00445 * 0.02562 * 7 2 1 10 10 C 1.53037 * 109.46333 * 179.97438 * 9 7 2 11 11 C 1.53187 * 109.31522 * 178.61746 * 10 9 7 12 12 N 1.46925 * 108.77565 * 54.63213 * 11 10 9 13 13 C 1.34779 * 120.62483 * 126.36835 * 12 11 10 14 14 O 1.21611 * 120.00596 * 3.32182 * 13 12 11 15 15 C 1.47108 * 119.99805 * 183.31305 * 13 12 11 16 16 C 1.32991 * 120.00249 * 173.23616 * 15 13 12 17 17 C 1.51269 * 120.84487 * 342.28447 * 16 15 13 18 18 C 1.53234 * 108.53554 * 231.32636 * 17 16 15 19 19 C 1.52966 * 109.40586 * 305.37566 * 18 17 16 20 20 C 1.52964 * 109.81459 * 63.59442 * 19 18 17 21 21 C 1.51266 * 120.85292 * 162.26568 * 16 15 13 22 22 C 1.46918 * 118.73992 * 306.64881 * 12 11 10 23 23 C 1.52759 * 109.01211 * 53.30833 * 22 12 11 24 24 H 0.96993 * 120.00178 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.44714 * 299.96857 * 9 7 2 26 26 H 1.09002 * 109.49863 * 58.66139 * 10 9 7 27 27 H 1.09004 * 109.49600 * 298.56946 * 10 9 7 28 28 H 1.09003 * 109.58563 * 294.84429 * 11 10 9 29 29 H 1.09002 * 109.70423 * 174.49415 * 11 10 9 30 30 H 1.08004 * 119.99633 * 353.23898 * 15 13 12 31 31 H 1.08994 * 109.62671 * 111.61908 * 17 16 15 32 32 H 1.08999 * 109.63326 * 351.04162 * 17 16 15 33 33 H 1.08994 * 109.48319 * 185.39412 * 18 17 16 34 34 H 1.09001 * 109.48223 * 65.35586 * 18 17 16 35 35 H 1.08995 * 109.41405 * 183.69975 * 19 18 17 36 36 H 1.09001 * 109.41123 * 303.49323 * 19 18 17 37 37 H 1.08999 * 109.47693 * 56.38588 * 20 19 18 38 38 H 1.09000 * 109.47900 * 176.42255 * 20 19 18 39 39 H 1.09002 * 109.62205 * 8.95328 * 21 16 15 40 40 H 1.08995 * 109.62455 * 248.38813 * 21 16 15 41 41 H 1.09004 * 109.58526 * 173.14414 * 22 12 11 42 42 H 1.09001 * 109.58558 * 293.56619 * 22 12 11 43 43 H 1.08998 * 109.56690 * 185.55173 * 23 22 12 44 44 H 1.08999 * 109.36201 * 65.49452 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0354 12 7 0.5225 -5.0089 -1.0814 13 6 0.5123 -6.0347 -1.9555 14 8 1.2563 -6.9823 -1.7899 15 6 -0.3990 -6.0083 -3.1100 16 6 -0.3165 -6.9513 -4.0441 17 6 0.9206 -7.8127 -4.1694 18 6 1.3920 -7.7791 -5.6270 19 6 0.2396 -8.1938 -6.5435 20 6 -0.8999 -7.1792 -6.4352 21 6 -1.4575 -7.1903 -5.0081 22 6 -0.4164 -3.8887 -1.2308 23 6 0.3701 -2.5792 -1.2484 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5566 0.8907 26 1 2.8884 -3.5913 0.8781 27 1 2.8557 -3.6192 -0.9019 28 1 0.9374 -5.0712 0.9788 29 1 2.1738 -5.8189 -0.0628 30 1 -1.1351 -5.2229 -3.1990 31 1 0.6833 -8.8378 -3.8850 32 1 1.7057 -7.4226 -3.5217 33 1 2.2253 -8.4698 -5.7556 34 1 1.7138 -6.7694 -5.8818 35 1 0.5926 -8.2336 -7.5740 36 1 -0.1225 -9.1783 -6.2474 37 1 -0.5238 -6.1837 -6.6709 38 1 -1.6909 -7.4447 -7.1367 39 1 -2.2004 -6.4001 -4.8991 40 1 -1.9150 -8.1577 -4.8012 41 1 -0.9667 -3.9954 -2.1656 42 1 -1.1134 -3.8819 -0.3928 43 1 -0.3224 -1.7376 -1.2596 44 1 0.9977 -2.5465 -2.1389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782055149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = -41.988810 kcal Electronic energy + Delta-G solvation = -22032.061853 eV Core-core repulsion = 18948.455835 eV Total energy + Delta-G solvation = -3083.606019 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88847 -38.21605 -36.66343 -33.49594 -32.74004 -31.19260 -31.04966 -30.05596 -27.19532 -25.82507 -23.17845 -22.91561 -22.39154 -21.31484 -20.04034 -18.77137 -17.70462 -17.01178 -16.16352 -15.55457 -14.99682 -14.73779 -14.54942 -14.38132 -13.96132 -13.57439 -13.40789 -13.07386 -12.77493 -12.72772 -12.55674 -12.33236 -12.14312 -11.87195 -11.52395 -11.31288 -11.17826 -10.94274 -10.92578 -10.68495 -10.56233 -10.38674 -10.32460 -10.08661 -9.60959 -9.20344 -9.11299 -8.94315 -8.72886 -8.36901 -7.89800 -6.03057 -4.09249 1.51639 3.29706 3.34360 3.37470 3.57120 3.65627 4.40835 4.62557 4.64104 4.80399 4.91774 5.09533 5.23015 5.25947 5.32917 5.35290 5.50814 5.55720 5.69701 5.75895 5.79250 5.87170 5.91767 5.93639 6.00761 6.04246 6.12427 6.17901 6.23783 6.32313 6.34781 6.49099 6.62656 6.68078 6.75118 6.93215 7.07246 7.18552 7.30162 7.66766 7.92612 8.01015 8.05336 8.40446 8.66586 8.93913 9.55776 11.02422 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.003880 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.983358 B = 7215.424933 C = 7575.339070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.112 3.888 12 N -0.596 5.596 13 C 0.544 3.456 14 O -0.560 6.560 15 C -0.224 4.224 16 C -0.033 4.033 17 C -0.106 4.106 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.091 4.091 22 C 0.102 3.898 23 C -0.125 4.125 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -13.145 -10.183 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.010 4.010 12 N -0.327 5.327 13 C 0.336 3.664 14 O -0.443 6.443 15 C -0.245 4.245 16 C -0.035 4.035 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.128 4.128 22 C -0.020 4.020 23 C -0.163 4.163 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.341 -13.468 -10.062 17.140 hybrid contribution 0.292 1.201 0.008 1.236 sum -3.049 -12.266 -10.054 16.150 Atomic orbital electron populations 1.69825 1.05842 1.26555 1.50905 1.24951 0.94870 0.99023 0.95073 0.86676 0.79635 0.83181 0.78618 1.20341 1.21305 1.20312 1.21178 0.92917 0.90617 1.50353 0.92774 1.18628 0.92650 0.91701 0.93991 1.22003 0.98906 0.94282 1.00916 1.21676 0.91750 0.99589 0.88006 1.48147 1.35859 1.20704 1.27966 1.18501 0.82625 0.82073 0.83245 1.90615 1.43350 1.34467 1.75826 1.22538 1.04065 1.01265 0.96612 1.22605 0.94847 0.93347 0.92733 1.21311 0.96588 0.99589 0.96775 1.21616 0.97607 1.01659 0.94675 1.21551 0.95946 0.98978 0.99453 1.21584 0.98049 1.00057 0.95855 1.20942 0.95406 1.02592 0.93850 1.22008 0.91744 0.87449 1.00749 1.21948 1.00109 0.94688 0.99562 0.92936 0.95480 0.92177 0.93009 0.92372 0.90383 0.85221 0.91001 0.87278 0.91704 0.91977 0.92135 0.91984 0.91646 0.91756 0.90831 0.89958 0.91211 0.92091 0.87776 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 11.30 55.43 0.63 -23.82 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.72 8.56 -34.44 -0.29 -14.01 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 10 C -0.12 -2.56 5.30 -26.62 -0.14 -2.70 16 11 C 0.11 2.11 6.43 -3.71 -0.02 2.08 16 12 N -0.60 -11.09 2.98 -174.43 -0.52 -11.61 16 13 C 0.54 9.86 7.43 -12.66 -0.09 9.76 16 14 O -0.56 -11.14 12.90 5.27 0.07 -11.07 16 15 C -0.22 -3.34 8.93 -37.80 -0.34 -3.67 16 16 C -0.03 -0.43 5.36 -100.61 -0.54 -0.97 16 17 C -0.11 -1.40 5.15 -27.48 -0.14 -1.54 16 18 C -0.12 -1.27 5.94 -26.63 -0.16 -1.43 16 19 C -0.12 -1.08 5.81 -26.77 -0.16 -1.24 16 20 C -0.12 -1.04 5.94 -26.63 -0.16 -1.20 16 21 C -0.09 -0.89 6.04 -27.49 -0.17 -1.06 16 22 C 0.10 1.87 6.32 -3.94 -0.02 1.85 16 23 C -0.12 -2.77 5.14 -26.83 -0.14 -2.90 16 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 30 H 0.13 1.73 5.83 -52.48 -0.31 1.43 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 1.78 5.22 -51.93 -0.27 1.50 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.10 5.31 -51.93 -0.28 0.82 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 2.56 6.03 -51.93 -0.31 2.24 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -28.54 335.13 -9.85 -38.40 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.40 Total: 1.69 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.66 Total: -14.48 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.11 Total: -35.43 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.07 Total: -11.07 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.54 -9.85 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782055149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.593 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds