Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99783 * 2 1 4 4 H 1.48496 * 109.47203 * 239.99863 * 3 2 1 5 5 H 1.48500 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47219 * 119.99585 * 3 2 1 7 7 C 1.37870 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00023 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00445 * 0.02562 * 7 2 1 10 10 C 1.53037 * 109.46333 * 179.97438 * 9 7 2 11 11 C 1.53187 * 109.31522 * 178.61746 * 10 9 7 12 12 N 1.46925 * 108.77565 * 54.63213 * 11 10 9 13 13 C 1.34779 * 120.62483 * 126.36835 * 12 11 10 14 14 O 1.21611 * 120.00596 * 3.32182 * 13 12 11 15 15 C 1.47108 * 119.99805 * 183.31305 * 13 12 11 16 16 C 1.32991 * 120.00249 * 173.23616 * 15 13 12 17 17 C 1.51269 * 120.84487 * 342.28447 * 16 15 13 18 18 C 1.53234 * 108.53554 * 231.32636 * 17 16 15 19 19 C 1.52966 * 109.40586 * 305.37566 * 18 17 16 20 20 C 1.52964 * 109.81459 * 63.59442 * 19 18 17 21 21 C 1.51266 * 120.85292 * 162.26568 * 16 15 13 22 22 C 1.46918 * 118.73992 * 306.64881 * 12 11 10 23 23 C 1.52759 * 109.01211 * 53.30833 * 22 12 11 24 24 H 0.96993 * 120.00178 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.44714 * 299.96857 * 9 7 2 26 26 H 1.09002 * 109.49863 * 58.66139 * 10 9 7 27 27 H 1.09004 * 109.49600 * 298.56946 * 10 9 7 28 28 H 1.09003 * 109.58563 * 294.84429 * 11 10 9 29 29 H 1.09002 * 109.70423 * 174.49415 * 11 10 9 30 30 H 1.08004 * 119.99633 * 353.23898 * 15 13 12 31 31 H 1.08994 * 109.62671 * 111.61908 * 17 16 15 32 32 H 1.08999 * 109.63326 * 351.04162 * 17 16 15 33 33 H 1.08994 * 109.48319 * 185.39412 * 18 17 16 34 34 H 1.09001 * 109.48223 * 65.35586 * 18 17 16 35 35 H 1.08995 * 109.41405 * 183.69975 * 19 18 17 36 36 H 1.09001 * 109.41123 * 303.49323 * 19 18 17 37 37 H 1.08999 * 109.47693 * 56.38588 * 20 19 18 38 38 H 1.09000 * 109.47900 * 176.42255 * 20 19 18 39 39 H 1.09002 * 109.62205 * 8.95328 * 21 16 15 40 40 H 1.08995 * 109.62455 * 248.38813 * 21 16 15 41 41 H 1.09004 * 109.58526 * 173.14414 * 22 12 11 42 42 H 1.09001 * 109.58558 * 293.56619 * 22 12 11 43 43 H 1.08998 * 109.56690 * 185.55173 * 23 22 12 44 44 H 1.08999 * 109.36201 * 65.49452 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0354 12 7 0.5225 -5.0089 -1.0814 13 6 0.5123 -6.0347 -1.9555 14 8 1.2563 -6.9823 -1.7899 15 6 -0.3990 -6.0083 -3.1100 16 6 -0.3165 -6.9513 -4.0441 17 6 0.9206 -7.8127 -4.1694 18 6 1.3920 -7.7791 -5.6270 19 6 0.2396 -8.1938 -6.5435 20 6 -0.8999 -7.1792 -6.4352 21 6 -1.4575 -7.1903 -5.0081 22 6 -0.4164 -3.8887 -1.2308 23 6 0.3701 -2.5792 -1.2484 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5566 0.8907 26 1 2.8884 -3.5913 0.8781 27 1 2.8557 -3.6192 -0.9019 28 1 0.9374 -5.0712 0.9788 29 1 2.1738 -5.8189 -0.0628 30 1 -1.1351 -5.2229 -3.1990 31 1 0.6833 -8.8378 -3.8850 32 1 1.7057 -7.4226 -3.5217 33 1 2.2253 -8.4698 -5.7556 34 1 1.7138 -6.7694 -5.8818 35 1 0.5926 -8.2336 -7.5740 36 1 -0.1225 -9.1783 -6.2474 37 1 -0.5238 -6.1837 -6.6709 38 1 -1.6909 -7.4447 -7.1367 39 1 -2.2004 -6.4001 -4.8991 40 1 -1.9150 -8.1577 -4.8012 41 1 -0.9667 -3.9954 -2.1656 42 1 -1.1134 -3.8819 -0.3928 43 1 -0.3224 -1.7376 -1.2596 44 1 0.9977 -2.5465 -2.1389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782055149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = -55.516259 kcal Electronic energy + Delta-G solvation = -22032.648447 eV Core-core repulsion = 18948.455835 eV Total energy + Delta-G solvation = -3084.192613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26357 -39.32274 -38.14476 -35.32410 -33.84788 -32.90184 -31.92765 -31.67364 -28.57057 -27.37229 -24.78552 -24.01581 -23.79606 -22.49840 -21.33581 -20.18774 -18.97133 -18.60773 -17.96902 -16.77140 -16.53384 -16.19342 -15.97810 -15.23975 -15.10161 -14.87884 -14.73642 -14.65943 -14.30281 -14.17201 -13.79065 -13.49928 -13.40336 -13.14703 -13.02920 -12.81675 -12.72764 -12.47237 -12.15282 -12.01154 -11.95301 -11.73909 -11.57189 -11.43902 -11.17177 -11.01440 -10.80480 -10.46046 -10.37498 -9.88613 -9.41992 -8.07890 -6.21485 0.37312 1.42889 1.43096 1.50765 2.16487 2.31454 2.44286 3.18377 3.59981 3.77129 3.92930 4.07209 4.14347 4.14878 4.26588 4.32591 4.39137 4.46476 4.49462 4.52213 4.58323 4.64716 4.75836 4.80980 4.86834 4.96785 5.01730 5.03532 5.15832 5.17906 5.18470 5.20202 5.25724 5.36050 5.42401 5.46860 5.55966 5.60861 5.66903 5.73501 5.97910 6.12650 6.38711 6.58631 6.87462 7.25371 7.46139 8.95451 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.003880 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.983358 B = 7215.424933 C = 7575.339070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.046 3.954 10 C -0.112 4.112 11 C 0.117 3.883 12 N -0.603 5.603 13 C 0.539 3.461 14 O -0.584 6.584 15 C -0.253 4.253 16 C -0.013 4.013 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.090 4.090 22 C 0.114 3.886 23 C -0.114 4.114 24 H 0.262 0.738 25 H 0.003 0.997 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 -14.001 -11.920 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.005 4.005 12 N -0.334 5.334 13 C 0.333 3.667 14 O -0.468 6.468 15 C -0.273 4.273 16 C -0.015 4.015 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.127 4.127 22 C -0.008 4.008 23 C -0.153 4.153 24 H 0.071 0.929 25 H 0.021 0.979 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.164 0.836 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.315 -14.329 -11.804 19.060 hybrid contribution 0.644 1.397 0.524 1.625 sum -3.672 -12.932 -11.280 17.549 Atomic orbital electron populations 1.69937 1.06812 1.27244 1.51074 1.25630 0.95711 1.01934 0.94751 0.85751 0.78540 0.79584 0.78591 1.20045 1.20688 1.19989 1.21520 0.92893 0.92300 1.50867 0.93517 1.18600 0.93033 0.91916 0.93723 1.21846 0.98310 0.94402 1.00512 1.21552 0.91948 0.98164 0.88845 1.48188 1.35960 1.21089 1.28167 1.19067 0.82590 0.81374 0.83704 1.90611 1.44495 1.35288 1.76422 1.22490 1.04758 1.03421 0.96645 1.23021 0.95179 0.91297 0.92026 1.21273 0.95903 0.99572 0.97924 1.21601 0.98887 1.01467 0.93335 1.21555 0.95083 0.99361 0.99674 1.21604 0.98619 0.99717 0.95456 1.21066 0.94243 1.03889 0.93501 1.21867 0.91131 0.85292 1.02516 1.21712 0.99412 0.96212 0.97972 0.92865 0.97874 0.91776 0.94137 0.91487 0.90193 0.83636 0.90561 0.90666 0.90949 0.92949 0.90630 0.91087 0.92349 0.89410 0.89618 0.88270 0.88233 0.91774 0.90088 0.95584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.54 11.30 21.45 0.24 -50.30 16 2 C 0.02 1.02 5.30 84.65 0.45 1.47 16 3 Si 0.95 43.01 29.54 68.60 2.03 45.03 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.54 -29.41 8.56 25.60 0.22 -29.19 16 8 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 9 C 0.05 2.25 2.07 -11.51 -0.02 2.23 16 10 C -0.11 -4.79 5.30 30.67 0.16 -4.62 16 11 C 0.12 4.45 6.43 86.36 0.56 5.01 16 12 N -0.60 -22.37 2.98 -824.02 -2.45 -24.83 16 13 C 0.54 19.40 7.43 86.57 0.64 20.04 16 14 O -0.58 -23.45 12.90 -4.07 -0.05 -23.50 16 15 C -0.25 -7.19 8.93 23.43 0.21 -6.98 16 16 C -0.01 -0.32 5.36 -17.26 -0.09 -0.41 16 17 C -0.11 -2.80 5.15 30.11 0.16 -2.65 16 18 C -0.12 -2.29 5.94 30.66 0.18 -2.11 16 19 C -0.12 -1.73 5.81 30.57 0.18 -1.56 16 20 C -0.12 -1.64 5.94 30.66 0.18 -1.45 16 21 C -0.09 -1.47 6.04 30.10 0.18 -1.29 16 22 C 0.11 4.12 6.32 86.22 0.54 4.66 16 23 C -0.11 -5.17 5.14 30.53 0.16 -5.02 16 24 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 25 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.08 3.00 7.02 -2.39 -0.02 2.99 16 30 H 0.15 3.58 5.83 -2.91 -0.02 3.56 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.48 5.22 -2.39 -0.01 2.47 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.24 7.94 -2.39 -0.02 1.22 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 3.00 5.31 -2.38 -0.01 2.98 16 42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.08 4.06 6.03 -2.39 -0.01 4.05 16 44 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -62.24 335.13 4.43 -57.81 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.96 Total: 17.64 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 3.70 Total: -21.86 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -2.21 Total: -75.13 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -62.24 4.43 -57.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782055149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.297 kcal (2) G-P(sol) polarization free energy of solvation -62.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds