Wall clock time and date at job start Mon Mar 30 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.39675 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.38909 * 120.07682 * 179.72491 * 4 2 1 6 6 C 1.38114 * 119.92453 * 179.78923 * 5 4 2 7 7 C 1.38283 * 120.06974 * 0.46736 * 6 5 4 8 8 C 1.50706 * 119.92263 * 179.76151 * 7 6 5 9 9 N 1.46497 * 109.47311 * 270.02701 * 8 7 6 10 10 C 1.34779 * 119.99773 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00475 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99853 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00187 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47249 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99990 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99725 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00312 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99731 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47182 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47383 * 120.00069 * 18 16 14 21 21 H 1.48505 * 109.47253 * 240.00197 * 18 16 14 22 22 C 1.38283 * 120.15691 * 359.78792 * 7 6 5 23 23 C 1.38110 * 120.07007 * 359.97438 * 22 7 6 24 24 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 25 25 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 26 26 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 27 27 H 1.09005 * 109.47136 * 239.99732 * 3 2 1 28 28 H 1.08996 * 109.47576 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47024 * 120.00116 * 3 2 1 30 30 H 1.08001 * 120.04020 * 0.02562 * 5 4 2 31 31 H 1.07991 * 119.96226 * 180.23198 * 6 5 4 32 32 H 1.09000 * 109.46873 * 30.02225 * 8 7 6 33 33 H 1.08995 * 109.47078 * 150.02249 * 8 7 6 34 34 H 0.96997 * 120.00400 * 359.97438 * 9 8 7 35 35 H 0.97004 * 119.99870 * 359.97438 * 12 10 9 36 36 H 1.08998 * 109.46760 * 299.99482 * 13 12 10 37 37 H 1.08997 * 109.47438 * 59.99694 * 13 12 10 38 38 H 0.97000 * 120.00354 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.96586 * 180.02562 * 22 7 6 40 40 H 1.08003 * 120.03111 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 3.5524 -1.2115 -0.0052 6 6 4.2399 -2.4094 -0.0003 7 6 3.5468 -3.6060 0.0007 8 6 4.3002 -4.9112 0.0006 9 7 4.5440 -5.3343 -1.3805 10 6 5.2059 -6.4822 -1.6267 11 8 5.6012 -7.1664 -0.7026 12 7 5.4298 -6.8718 -2.8974 13 6 6.1498 -8.1193 -3.1651 14 6 6.2654 -8.3230 -4.6538 15 1 5.8450 -7.5958 -5.3326 16 6 6.9088 -9.4374 -5.1491 17 7 7.4221 -10.3221 -4.3225 18 14 7.0528 -9.6896 -6.9944 19 1 6.3993 -8.5587 -7.7011 20 1 8.4868 -9.7485 -7.3757 21 1 6.3871 -10.9618 -7.3736 22 6 2.1639 -3.6078 0.0011 23 6 1.4703 -2.4135 0.0011 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 2.8242 1.3264 -0.8900 28 1 1.4893 2.0972 -0.0005 29 1 2.8242 1.3264 0.8900 30 1 4.0943 -0.2773 -0.0097 31 1 5.3198 -2.4115 -0.0010 32 1 5.2528 -4.7807 0.5141 33 1 3.7113 -5.6706 0.5148 34 1 4.2284 -4.7888 -2.1179 35 1 5.1141 -6.3262 -3.6347 36 1 7.1464 -8.0646 -2.7271 37 1 5.6050 -8.9548 -2.7256 38 1 7.8744 -11.1062 -4.6710 39 1 1.6257 -4.5442 0.0022 40 1 0.3903 -2.4157 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783644554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:26 Heat of formation + Delta-G solvation = 0.329348 kcal Electronic energy + Delta-G solvation = -20197.882149 eV Core-core repulsion = 17012.570840 eV Total energy + Delta-G solvation = -3185.311309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95010 -38.94980 -36.81282 -34.34355 -33.77606 -32.23823 -31.30885 -30.49526 -28.49119 -27.39696 -26.04303 -23.72919 -22.49891 -22.29632 -20.55902 -20.04370 -18.08438 -17.55019 -16.15750 -16.13574 -15.60554 -15.41058 -15.02152 -14.79623 -14.57002 -14.18013 -14.00815 -13.67677 -13.37587 -13.06414 -13.00813 -12.60799 -12.53491 -12.45002 -12.30170 -11.91250 -11.59396 -11.32026 -10.94508 -10.87443 -10.85068 -10.25153 -10.04580 -9.30223 -9.28596 -9.03782 -8.69234 -8.56527 -7.65606 -7.51109 -6.10137 -4.16137 1.33636 1.36532 2.80867 3.27582 3.33955 3.37178 3.47577 3.94346 4.07502 4.38521 4.58831 4.62612 4.84333 4.85882 4.87530 4.96791 5.19706 5.25881 5.27891 5.28451 5.29945 5.35064 5.36118 5.57017 5.75421 5.93736 5.99592 6.12784 6.26082 6.67199 6.69162 6.94845 7.00439 7.21780 7.24379 7.60706 7.64696 7.64916 7.99619 8.13222 8.84062 9.04984 9.42145 9.56940 11.00228 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.002655 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.860588 B =10543.987347 C =10945.374938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.641 5.641 3 C 0.097 3.903 4 C 0.214 3.786 5 C -0.197 4.197 6 C -0.052 4.052 7 C -0.157 4.157 8 C 0.189 3.811 9 N -0.754 5.754 10 C 0.692 3.308 11 O -0.603 6.603 12 N -0.731 5.731 13 C 0.267 3.733 14 C -0.539 4.539 15 H 0.063 0.937 16 C 0.062 3.938 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.052 4.052 23 C -0.200 4.200 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.391 0.609 35 H 0.386 0.614 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.124 0.876 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 23.751 8.270 28.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.353 5.353 3 C -0.047 4.047 4 C 0.113 3.887 5 C -0.220 4.220 6 C -0.071 4.071 7 C -0.160 4.160 8 C 0.065 3.935 9 N -0.411 5.411 10 C 0.392 3.608 11 O -0.483 6.483 12 N -0.383 5.383 13 C 0.145 3.855 14 C -0.578 4.578 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.071 4.071 23 C -0.222 4.222 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.224 0.776 35 H 0.218 0.782 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.367 23.059 9.129 28.173 hybrid contribution -0.219 0.393 -1.662 1.722 sum -13.586 23.452 7.467 28.113 Atomic orbital electron populations 1.21654 0.79602 1.02651 1.01083 1.46322 1.04940 1.03235 1.80802 1.21587 0.96993 0.84820 1.01267 1.17854 0.91272 0.85546 0.94022 1.20617 0.91946 0.98541 1.10870 1.20874 0.99691 0.91203 0.95351 1.19741 0.93722 0.94653 1.07845 1.19793 0.98800 0.91697 0.83255 1.45269 1.63130 1.24856 1.07854 1.16180 0.79235 0.80937 0.84485 1.90863 1.57796 1.55837 1.43761 1.45710 1.60815 1.27596 1.04183 1.18966 0.91486 0.79318 0.95703 1.21280 1.37704 1.07659 0.91150 0.91929 1.24951 0.95091 0.95567 0.98510 1.69990 1.36542 1.11359 1.34450 0.86366 0.77835 0.78139 0.84570 1.19685 1.20852 1.20845 1.20873 0.93455 0.97429 0.95368 1.20660 0.99536 0.91016 1.10983 0.93491 0.91664 0.91228 0.92778 0.91032 0.92806 0.86205 0.85843 0.91542 0.91543 0.77575 0.78218 0.95784 0.95786 0.92570 0.85839 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.16 59.85 0.61 1.14 16 2 N -0.64 -5.07 3.41 -187.55 -0.64 -5.71 16 3 C 0.10 0.55 9.40 59.85 0.56 1.11 16 4 C 0.21 2.13 6.55 -83.79 -0.55 1.58 16 5 C -0.20 -1.97 9.31 -39.38 -0.37 -2.34 16 6 C -0.05 -0.56 9.69 -39.61 -0.38 -0.95 16 7 C -0.16 -1.84 5.25 -104.59 -0.55 -2.39 16 8 C 0.19 2.69 5.79 -5.19 -0.03 2.66 16 9 N -0.75 -12.12 5.55 -66.42 -0.37 -12.49 16 10 C 0.69 15.00 8.57 -86.92 -0.74 14.25 16 11 O -0.60 -15.70 16.34 5.29 0.09 -15.62 16 12 N -0.73 -16.34 5.55 -66.42 -0.37 -16.71 16 13 C 0.27 7.36 5.43 -5.19 -0.03 7.33 16 14 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 15 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 18 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.05 -0.56 9.69 -39.61 -0.38 -0.95 16 23 C -0.20 -1.98 9.21 -39.38 -0.36 -2.35 16 24 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.27 7.92 -51.93 -0.41 -0.14 16 26 H 0.07 0.39 6.20 -51.93 -0.32 0.07 16 27 H 0.05 0.31 7.94 -51.93 -0.41 -0.10 16 28 H 0.07 0.28 7.79 -51.93 -0.40 -0.13 16 29 H 0.05 0.30 7.96 -51.93 -0.41 -0.11 16 30 H 0.12 1.01 6.74 -52.49 -0.35 0.65 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.39 5.33 8.48 -40.82 -0.35 4.98 16 35 H 0.39 7.42 8.34 -40.82 -0.34 7.08 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.12 0.99 6.14 -52.48 -0.32 0.67 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -34.43 338.90 -8.92 -43.36 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.81 Total: 6.34 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -2.64 Total: 5.41 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.64 Total: -60.80 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.43 -8.92 -43.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783644554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.688 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds