Wall clock time and date at job start Mon Mar 30 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.39675 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.38909 * 120.07682 * 179.72491 * 4 2 1 6 6 C 1.38114 * 119.92453 * 179.78923 * 5 4 2 7 7 C 1.38283 * 120.06974 * 0.46736 * 6 5 4 8 8 C 1.50706 * 119.92263 * 179.76151 * 7 6 5 9 9 N 1.46497 * 109.47311 * 270.02701 * 8 7 6 10 10 C 1.34779 * 119.99773 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00475 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99853 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00187 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47249 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99990 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99725 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00312 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99731 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47182 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47383 * 120.00069 * 18 16 14 21 21 H 1.48505 * 109.47253 * 240.00197 * 18 16 14 22 22 C 1.38283 * 120.15691 * 359.78792 * 7 6 5 23 23 C 1.38110 * 120.07007 * 359.97438 * 22 7 6 24 24 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 25 25 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 26 26 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 27 27 H 1.09005 * 109.47136 * 239.99732 * 3 2 1 28 28 H 1.08996 * 109.47576 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47024 * 120.00116 * 3 2 1 30 30 H 1.08001 * 120.04020 * 0.02562 * 5 4 2 31 31 H 1.07991 * 119.96226 * 180.23198 * 6 5 4 32 32 H 1.09000 * 109.46873 * 30.02225 * 8 7 6 33 33 H 1.08995 * 109.47078 * 150.02249 * 8 7 6 34 34 H 0.96997 * 120.00400 * 359.97438 * 9 8 7 35 35 H 0.97004 * 119.99870 * 359.97438 * 12 10 9 36 36 H 1.08998 * 109.46760 * 299.99482 * 13 12 10 37 37 H 1.08997 * 109.47438 * 59.99694 * 13 12 10 38 38 H 0.97000 * 120.00354 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.96586 * 180.02562 * 22 7 6 40 40 H 1.08003 * 120.03111 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 3.5524 -1.2115 -0.0052 6 6 4.2399 -2.4094 -0.0003 7 6 3.5468 -3.6060 0.0007 8 6 4.3002 -4.9112 0.0006 9 7 4.5440 -5.3343 -1.3805 10 6 5.2059 -6.4822 -1.6267 11 8 5.6012 -7.1664 -0.7026 12 7 5.4298 -6.8718 -2.8974 13 6 6.1498 -8.1193 -3.1651 14 6 6.2654 -8.3230 -4.6538 15 1 5.8450 -7.5958 -5.3326 16 6 6.9088 -9.4374 -5.1491 17 7 7.4221 -10.3221 -4.3225 18 14 7.0528 -9.6896 -6.9944 19 1 6.3993 -8.5587 -7.7011 20 1 8.4868 -9.7485 -7.3757 21 1 6.3871 -10.9618 -7.3736 22 6 2.1639 -3.6078 0.0011 23 6 1.4703 -2.4135 0.0011 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 2.8242 1.3264 -0.8900 28 1 1.4893 2.0972 -0.0005 29 1 2.8242 1.3264 0.8900 30 1 4.0943 -0.2773 -0.0097 31 1 5.3198 -2.4115 -0.0010 32 1 5.2528 -4.7807 0.5141 33 1 3.7113 -5.6706 0.5148 34 1 4.2284 -4.7888 -2.1179 35 1 5.1141 -6.3262 -3.6347 36 1 7.1464 -8.0646 -2.7271 37 1 5.6050 -8.9548 -2.7256 38 1 7.8744 -11.1062 -4.6710 39 1 1.6257 -4.5442 0.0022 40 1 0.3903 -2.4157 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783644554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:25 Heat of formation + Delta-G solvation = -23.962847 kcal Electronic energy + Delta-G solvation = -20198.935537 eV Core-core repulsion = 17012.570840 eV Total energy + Delta-G solvation = -3186.364698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01571 -40.38829 -37.63217 -36.15926 -35.34212 -34.28899 -32.05534 -31.55523 -29.23443 -28.97651 -27.21689 -24.90429 -24.03074 -23.26341 -21.83014 -21.36803 -19.81442 -18.39121 -17.95110 -17.34564 -16.94336 -16.43721 -16.31528 -16.01363 -15.88509 -15.31709 -14.95580 -14.93637 -14.58103 -14.40448 -14.14472 -14.01176 -13.45146 -13.37583 -13.32990 -12.97525 -12.85347 -12.77651 -12.72839 -12.25870 -12.20116 -11.68464 -11.42765 -11.30557 -10.79875 -10.65982 -10.23735 -9.82911 -9.54091 -8.26840 -8.19489 -6.42866 0.51192 0.55021 1.44558 1.46275 1.59610 2.02513 2.26147 2.28599 2.41641 2.97382 3.08198 3.67059 3.87733 3.91529 4.09803 4.21751 4.30286 4.51810 4.53302 4.55811 4.71314 4.76372 4.82449 4.89246 4.91472 4.96309 5.11616 5.17746 5.29760 5.36891 5.44326 5.51506 5.56629 5.71631 5.80847 5.87585 5.92284 6.31248 6.36678 6.54282 6.69259 7.26431 7.35122 7.76208 8.86079 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031317 B = 0.002655 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.860588 B =10543.987347 C =10945.374938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.644 5.644 3 C 0.090 3.910 4 C 0.212 3.788 5 C -0.204 4.204 6 C -0.055 4.055 7 C -0.170 4.170 8 C 0.191 3.809 9 N -0.728 5.728 10 C 0.690 3.310 11 O -0.650 6.650 12 N -0.724 5.724 13 C 0.285 3.715 14 C -0.553 4.553 15 H 0.083 0.917 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.254 1.254 20 H -0.279 1.279 21 H -0.278 1.278 22 C -0.055 4.055 23 C -0.205 4.205 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.407 0.593 35 H 0.404 0.596 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.269 0.731 39 H 0.128 0.872 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.272 26.252 6.694 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.354 5.354 3 C -0.052 4.052 4 C 0.109 3.891 5 C -0.226 4.226 6 C -0.074 4.074 7 C -0.173 4.173 8 C 0.068 3.932 9 N -0.385 5.385 10 C 0.390 3.610 11 O -0.533 6.533 12 N -0.378 5.378 13 C 0.161 3.839 14 C -0.591 4.591 15 H 0.101 0.899 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.177 1.177 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.074 4.074 23 C -0.228 4.228 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.243 0.757 35 H 0.239 0.761 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.932 25.669 7.546 30.640 hybrid contribution 0.169 -0.248 -1.064 1.106 sum -14.763 25.420 6.482 30.102 Atomic orbital electron populations 1.21825 0.78342 1.03656 1.01744 1.46620 1.05973 1.03188 1.79669 1.21752 0.97594 0.84522 1.01353 1.18061 0.91506 0.86482 0.93046 1.20779 0.92282 0.98748 1.10806 1.20954 1.00013 0.91273 0.95188 1.19460 0.93963 0.93402 1.10479 1.19837 0.98711 0.93010 0.81641 1.45101 1.61035 1.22799 1.09534 1.16348 0.79261 0.81884 0.83505 1.90829 1.59744 1.57721 1.45049 1.45312 1.60688 1.26473 1.05325 1.18414 0.89386 0.80263 0.95797 1.21630 1.37940 1.08406 0.91127 0.89889 1.26083 0.94264 0.94997 1.04375 1.70151 1.37369 1.12124 1.37326 0.85078 0.77977 0.78570 0.77353 1.17694 1.20419 1.20398 1.20960 0.93101 0.98186 0.95174 1.20840 1.00440 0.90681 1.10802 0.92945 0.89767 0.91200 0.92696 0.88910 0.92675 0.84725 0.85485 0.92367 0.92340 0.75678 0.76094 0.99668 0.99663 0.92243 0.85427 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.16 127.77 1.30 2.04 16 2 N -0.64 -8.51 3.41 -747.29 -2.55 -11.06 16 3 C 0.09 0.79 9.40 127.77 1.20 1.99 16 4 C 0.21 3.78 6.55 38.21 0.25 4.03 16 5 C -0.20 -3.72 9.31 22.40 0.21 -3.52 16 6 C -0.06 -1.14 9.69 22.25 0.22 -0.92 16 7 C -0.17 -3.88 5.25 -19.84 -0.10 -3.98 16 8 C 0.19 5.49 5.79 85.64 0.50 5.99 16 9 N -0.73 -23.28 5.55 -482.30 -2.68 -25.96 16 10 C 0.69 30.55 8.57 179.05 1.53 32.09 16 11 O -0.65 -35.28 16.34 -3.98 -0.06 -35.34 16 12 N -0.72 -32.86 5.55 -482.31 -2.68 -35.54 16 13 C 0.28 16.33 5.43 85.63 0.46 16.80 16 14 C -0.55 -30.92 9.28 25.60 0.24 -30.68 16 15 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 16 C 0.00 0.13 5.46 84.66 0.46 0.59 16 17 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 18 Si 0.99 43.06 29.54 68.60 2.03 45.08 16 19 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 C -0.05 -1.13 9.69 22.25 0.22 -0.91 16 23 C -0.21 -3.70 9.21 22.40 0.21 -3.50 16 24 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.08 0.42 7.92 -2.39 -0.02 0.40 16 26 H 0.07 0.60 6.20 -2.39 -0.01 0.59 16 27 H 0.05 0.49 7.94 -2.38 -0.02 0.47 16 28 H 0.09 0.42 7.79 -2.39 -0.02 0.40 16 29 H 0.05 0.48 7.96 -2.38 -0.02 0.46 16 30 H 0.13 1.98 6.74 -2.91 -0.02 1.96 16 31 H 0.13 2.45 8.06 -2.92 -0.02 2.43 16 32 H 0.06 1.77 8.08 -2.39 -0.02 1.76 16 33 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 34 H 0.41 10.60 8.48 -92.71 -0.79 9.81 16 35 H 0.40 15.22 8.34 -92.71 -0.77 14.45 16 36 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 39 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.14 1.95 6.14 -2.91 -0.02 1.93 16 Total: -1.00 -76.12 338.90 0.53 -75.60 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.50 Total: 24.15 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 6.69 Total: 20.01 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -7.62 Total: -129.50 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.06 Total: -35.34 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -76.12 0.53 -75.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783644554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.633 kcal (2) G-P(sol) polarization free energy of solvation -76.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds