Wall clock time and date at job start Mon Mar 30 2020 01:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 C 1.39589 * 120.00361 * 179.97438 * 2 1 3 13 13 C 1.39049 * 119.92080 * 179.72683 * 12 2 1 14 14 C 1.37788 * 120.07724 * 179.76352 * 13 12 2 15 15 C 1.39724 * 119.92061 * 0.51177 * 14 13 12 16 16 C 1.47462 * 120.08254 * 179.71919 * 15 14 13 17 17 N 1.29756 * 119.99774 * 0.02562 * 16 15 14 18 18 N 1.40107 * 119.99700 * 180.02562 * 17 16 15 19 19 C 1.46493 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47269 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.47169 * 64.99500 * 20 19 18 22 22 C 1.39728 * 119.83960 * 359.73979 * 15 14 13 23 23 C 1.37783 * 119.91714 * 0.02562 * 22 15 14 24 24 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 25 25 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 26 26 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 28 28 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 29 29 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 30 30 H 1.07995 * 119.96060 * 359.97438 * 13 12 2 31 31 H 1.08006 * 120.03527 * 180.24823 * 14 13 12 32 32 H 1.08002 * 120.00345 * 180.02562 * 16 15 14 33 33 H 0.97001 * 119.99817 * 359.97438 * 18 17 16 34 34 H 1.08998 * 109.47275 * 299.99360 * 19 18 17 35 35 H 1.09005 * 109.47757 * 59.99540 * 19 18 17 36 36 H 1.09006 * 109.47374 * 184.99407 * 20 19 18 37 37 H 1.09002 * 109.46719 * 304.99657 * 20 19 18 38 38 H 0.96697 * 113.99866 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.04600 * 179.97438 * 22 15 14 40 40 H 1.08003 * 119.96213 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.8609 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6680 11 1 4.9006 3.5256 -3.6667 12 6 2.1630 -1.2088 0.0005 13 6 3.5535 -1.2068 -0.0052 14 6 4.2458 -2.3982 0.0002 15 6 3.5489 -3.6092 0.0007 16 6 4.2862 -4.8863 0.0003 17 7 5.5838 -4.8862 -0.0001 18 7 6.2843 -6.0996 -0.0010 19 6 7.7492 -6.0996 -0.0020 20 6 8.2593 -7.5420 -0.0023 21 8 7.8804 -8.1810 -1.2230 22 6 2.1516 -3.6073 0.0012 23 6 1.4661 -2.4121 0.0006 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6084 2.0285 0.5138 28 1 3.1500 1.1384 0.5139 29 1 4.0302 4.4439 -0.8505 30 1 4.0915 -0.2704 -0.0105 31 1 5.3259 -2.3958 -0.0002 32 1 3.7462 -5.8216 0.0002 33 1 5.7992 -6.9396 -0.0011 34 1 8.1120 -5.5854 -0.8920 35 1 8.1132 -5.5860 0.8879 36 1 9.3457 -7.5433 0.0865 37 1 7.8252 -8.0810 0.8399 38 1 8.1709 -9.1007 -1.2922 39 1 1.6096 -4.5415 0.0011 40 1 0.3861 -2.4098 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814942604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:18 Heat of formation + Delta-G solvation = 26.706562 kcal Electronic energy + Delta-G solvation = -20217.333030 eV Core-core repulsion = 17033.165523 eV Total energy + Delta-G solvation = -3184.167507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.90587 -37.77393 -36.51947 -35.33788 -32.92464 -32.41710 -30.46951 -29.60501 -27.82531 -27.20319 -25.07614 -23.19399 -22.31187 -21.78833 -20.88057 -19.40335 -17.95563 -16.85536 -16.60150 -16.49093 -15.82838 -15.13474 -14.72009 -14.40494 -14.14103 -13.82937 -13.71187 -13.51427 -13.24805 -12.89673 -12.69408 -12.37277 -12.11764 -11.73472 -11.47930 -11.32007 -11.24181 -11.15789 -10.83782 -10.68874 -10.48671 -10.27471 -9.97094 -9.80314 -9.63900 -9.02303 -8.49231 -8.27445 -7.74395 -6.35163 -5.97557 -4.15673 1.68532 2.17013 3.04631 3.14360 3.27673 3.35885 3.41164 3.85936 4.13966 4.43039 4.67356 4.70975 4.80848 4.99311 5.18909 5.23301 5.38428 5.53527 5.58236 5.64908 5.78491 5.81819 6.04228 6.11962 6.23208 6.29752 6.42167 6.53539 6.66661 6.99609 7.04009 7.17556 7.22928 7.25537 7.30928 7.39916 7.58940 7.82835 8.16175 8.25224 8.46344 8.70154 8.93259 9.51215 10.97250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.003326 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.279710 B = 8415.399801 C = 9485.729530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.611 5.611 3 C 0.247 3.753 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.251 3.749 13 C -0.193 4.193 14 C -0.037 4.037 15 C -0.135 4.135 16 C 0.092 3.908 17 N -0.248 5.248 18 N -0.669 5.669 19 C 0.162 3.838 20 C 0.065 3.935 21 O -0.570 6.570 22 C -0.049 4.049 23 C -0.225 4.225 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.038 0.962 29 H 0.263 0.737 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.373 0.627 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.379 0.621 39 H 0.113 0.887 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -19.884 3.644 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.316 5.316 3 C 0.127 3.873 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.141 3.859 13 C -0.216 4.216 14 C -0.058 4.058 15 C -0.140 4.140 16 C -0.119 4.119 17 N -0.055 5.055 18 N -0.408 5.408 19 C 0.037 3.963 20 C -0.014 4.014 21 O -0.375 6.375 22 C -0.070 4.070 23 C -0.248 4.248 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.225 0.775 39 H 0.131 0.869 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.004 -18.326 3.578 19.097 hybrid contribution -0.322 -1.103 -0.907 1.463 sum 3.683 -19.429 2.671 19.954 Atomic orbital electron populations 1.21497 0.81373 1.01130 1.00588 1.47162 1.04543 1.04776 1.75111 1.19352 0.92194 0.78626 0.97132 1.21600 1.36285 1.06376 0.92633 0.92163 1.24959 0.95406 0.96298 0.97427 1.69934 1.38413 1.14372 1.30710 0.86465 0.78074 0.78415 0.84675 1.19697 1.20989 1.20815 1.18085 0.91556 0.85957 0.90257 1.20871 0.92521 0.98954 1.09213 1.20992 0.99379 0.90847 0.94565 1.17900 0.92157 0.90472 1.13462 1.23870 0.90228 0.96662 1.01095 1.74168 1.09569 1.09490 1.12241 1.47723 1.04010 1.01846 1.87206 1.20945 0.79448 0.94202 1.01720 1.22459 0.98777 0.93511 0.86629 1.86584 1.81497 1.30197 1.39240 1.20683 0.92494 0.96863 0.96994 1.20453 0.99086 0.91152 1.14102 0.93924 0.92650 0.91967 0.95099 0.94457 0.92695 0.84815 0.86093 0.88482 0.79022 0.92009 0.91303 0.91879 0.93146 0.77452 0.86939 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 10.23 59.85 0.61 2.30 16 2 N -0.61 -13.00 2.99 -180.93 -0.54 -13.54 16 3 C 0.25 6.17 4.94 -5.19 -0.03 6.15 16 4 C -0.53 -14.53 9.39 -34.44 -0.32 -14.86 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.25 5.07 6.56 -83.72 -0.55 4.52 16 13 C -0.19 -4.00 9.18 -39.45 -0.36 -4.36 16 14 C -0.04 -0.68 9.57 -39.19 -0.37 -1.06 16 15 C -0.13 -2.25 5.87 -105.03 -0.62 -2.87 16 16 C 0.09 1.38 10.75 -14.67 -0.16 1.22 16 17 N -0.25 -3.91 10.60 32.16 0.34 -3.57 16 18 N -0.67 -8.67 6.58 -10.62 -0.07 -8.74 16 19 C 0.16 1.70 7.06 -4.05 -0.03 1.67 16 20 C 0.07 0.46 7.18 37.16 0.27 0.73 16 21 O -0.57 -4.74 13.61 -35.23 -0.48 -5.22 16 22 C -0.05 -0.76 9.78 -39.19 -0.38 -1.14 16 23 C -0.22 -3.84 9.19 -39.44 -0.36 -4.20 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.80 6.18 -51.93 -0.32 0.48 16 26 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 27 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 28 H 0.04 0.99 6.19 -51.93 -0.32 0.67 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.13 3.04 6.13 -52.49 -0.32 2.71 16 31 H 0.12 2.19 7.55 -52.48 -0.40 1.80 16 32 H 0.10 1.20 8.02 -52.49 -0.42 0.78 16 33 H 0.37 4.30 8.43 -182.59 -1.54 2.76 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.38 1.30 9.12 45.56 0.42 1.71 16 39 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.12 1.75 6.12 -52.48 -0.32 1.43 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -32.06 341.48 -8.42 -40.47 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.13 Total: 4.29 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -2.40 Total: -10.30 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.47 Total: -50.88 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.48 Total: -5.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.06 -8.42 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814942604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.179 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds