Wall clock time and date at job start Mon Mar 30 2020 01:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 C 1.39589 * 120.00361 * 179.97438 * 2 1 3 13 13 C 1.39049 * 119.92080 * 179.72683 * 12 2 1 14 14 C 1.37788 * 120.07724 * 179.76352 * 13 12 2 15 15 C 1.39724 * 119.92061 * 0.51177 * 14 13 12 16 16 C 1.47462 * 120.08254 * 179.71919 * 15 14 13 17 17 N 1.29756 * 119.99774 * 0.02562 * 16 15 14 18 18 N 1.40107 * 119.99700 * 180.02562 * 17 16 15 19 19 C 1.46493 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47269 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.47169 * 64.99500 * 20 19 18 22 22 C 1.39728 * 119.83960 * 359.73979 * 15 14 13 23 23 C 1.37783 * 119.91714 * 0.02562 * 22 15 14 24 24 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 25 25 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 26 26 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 28 28 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 29 29 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 30 30 H 1.07995 * 119.96060 * 359.97438 * 13 12 2 31 31 H 1.08006 * 120.03527 * 180.24823 * 14 13 12 32 32 H 1.08002 * 120.00345 * 180.02562 * 16 15 14 33 33 H 0.97001 * 119.99817 * 359.97438 * 18 17 16 34 34 H 1.08998 * 109.47275 * 299.99360 * 19 18 17 35 35 H 1.09005 * 109.47757 * 59.99540 * 19 18 17 36 36 H 1.09006 * 109.47374 * 184.99407 * 20 19 18 37 37 H 1.09002 * 109.46719 * 304.99657 * 20 19 18 38 38 H 0.96697 * 113.99866 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.04600 * 179.97438 * 22 15 14 40 40 H 1.08003 * 119.96213 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.8609 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6680 11 1 4.9006 3.5256 -3.6667 12 6 2.1630 -1.2088 0.0005 13 6 3.5535 -1.2068 -0.0052 14 6 4.2458 -2.3982 0.0002 15 6 3.5489 -3.6092 0.0007 16 6 4.2862 -4.8863 0.0003 17 7 5.5838 -4.8862 -0.0001 18 7 6.2843 -6.0996 -0.0010 19 6 7.7492 -6.0996 -0.0020 20 6 8.2593 -7.5420 -0.0023 21 8 7.8804 -8.1810 -1.2230 22 6 2.1516 -3.6073 0.0012 23 6 1.4661 -2.4121 0.0006 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6084 2.0285 0.5138 28 1 3.1500 1.1384 0.5139 29 1 4.0302 4.4439 -0.8505 30 1 4.0915 -0.2704 -0.0105 31 1 5.3259 -2.3958 -0.0002 32 1 3.7462 -5.8216 0.0002 33 1 5.7992 -6.9396 -0.0011 34 1 8.1120 -5.5854 -0.8920 35 1 8.1132 -5.5860 0.8879 36 1 9.3457 -7.5433 0.0865 37 1 7.8252 -8.0810 0.8399 38 1 8.1709 -9.1007 -1.2922 39 1 1.6096 -4.5415 0.0011 40 1 0.3861 -2.4098 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814942604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:18 Heat of formation + Delta-G solvation = 3.905617 kcal Electronic energy + Delta-G solvation = -20218.321753 eV Core-core repulsion = 17033.165523 eV Total energy + Delta-G solvation = -3185.156230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34829 -38.55576 -37.68027 -36.64729 -34.78933 -33.61459 -31.92015 -30.89459 -29.59544 -28.25003 -26.66885 -24.84589 -23.22503 -23.13216 -22.29710 -20.77931 -18.64501 -18.52485 -18.19597 -17.76656 -16.97399 -16.66048 -15.95469 -15.79465 -15.41547 -15.30869 -14.96874 -14.54062 -14.38699 -14.21117 -14.03999 -14.00541 -13.56599 -13.17044 -13.01123 -12.76174 -12.60090 -12.53569 -12.51613 -12.24973 -12.11209 -11.70953 -11.46608 -11.00647 -10.84536 -10.63921 -10.55484 -9.68454 -8.95672 -8.29347 -7.63024 -6.36394 0.36721 0.75313 1.36098 1.38193 1.50191 1.86757 2.07680 2.35214 2.63466 3.06929 3.26543 3.35600 4.01670 4.06076 4.13878 4.23878 4.27716 4.43825 4.47957 4.55323 4.69289 4.73121 4.83030 4.87267 4.89224 4.91576 5.01515 5.09113 5.18715 5.30614 5.39874 5.59996 5.70539 5.75351 5.93436 6.07995 6.15932 6.34974 6.49693 6.83413 6.89703 6.92923 7.35240 7.64805 8.84036 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.003326 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.279710 B = 8415.399801 C = 9485.729530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.627 5.627 3 C 0.263 3.737 4 C -0.539 4.539 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.223 3.777 13 C -0.220 4.220 14 C -0.047 4.047 15 C -0.128 4.128 16 C 0.086 3.914 17 N -0.276 5.276 18 N -0.664 5.664 19 C 0.152 3.848 20 C 0.074 3.926 21 O -0.595 6.595 22 C -0.036 4.036 23 C -0.215 4.215 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.267 0.733 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.382 0.618 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.399 0.601 39 H 0.160 0.840 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 -23.024 3.152 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.334 5.334 3 C 0.142 3.858 4 C -0.578 4.578 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.116 3.884 13 C -0.243 4.243 14 C -0.068 4.068 15 C -0.133 4.133 16 C -0.124 4.124 17 N -0.083 5.083 18 N -0.404 5.404 19 C 0.027 3.973 20 C -0.005 4.005 21 O -0.404 6.404 22 C -0.057 4.057 23 C -0.237 4.237 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.220 0.780 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.250 0.750 39 H 0.178 0.822 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.252 -21.523 3.090 21.985 hybrid contribution 0.023 -0.304 -0.720 0.782 sum 3.274 -21.827 2.370 22.198 Atomic orbital electron populations 1.21661 0.79001 1.02888 1.01049 1.47017 1.05905 1.03721 1.76739 1.18839 0.91240 0.80310 0.95454 1.21802 1.36235 1.06394 0.93399 0.93284 1.25771 0.95140 0.96398 1.01434 1.70035 1.39091 1.14843 1.32709 0.85465 0.77967 0.78228 0.79777 1.19516 1.19824 1.20455 1.18346 0.91380 0.86775 0.91867 1.20692 0.93387 0.98253 1.11932 1.20984 0.99226 0.91282 0.95324 1.18197 0.93171 0.90403 1.11531 1.23901 0.90200 0.96867 1.01468 1.74086 1.10600 1.11771 1.11819 1.47849 1.04804 1.01253 1.86505 1.21179 0.78248 0.96852 1.00987 1.22412 1.00057 0.91232 0.86771 1.86517 1.82037 1.32069 1.39826 1.21143 0.91917 0.98137 0.94533 1.20776 1.00458 0.90135 1.12380 0.93991 0.89199 0.91942 0.96876 0.97106 0.92404 0.88598 0.86765 0.85094 0.78037 0.94033 0.90839 0.89485 0.91503 0.75039 0.82209 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.26 10.23 127.77 1.31 4.56 16 2 N -0.63 -27.35 2.99 -726.34 -2.17 -29.52 16 3 C 0.26 13.95 4.94 85.63 0.42 14.37 16 4 C -0.54 -30.78 9.39 25.60 0.24 -30.54 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 6 C 0.01 0.67 5.46 84.65 0.46 1.13 16 7 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 8 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 C 0.22 9.12 6.56 38.30 0.25 9.38 16 13 C -0.22 -9.63 9.18 22.36 0.21 -9.42 16 14 C -0.05 -1.80 9.57 22.52 0.22 -1.59 16 15 C -0.13 -4.06 5.87 -20.13 -0.12 -4.18 16 16 C 0.09 2.36 10.75 87.43 0.94 3.30 16 17 N -0.28 -8.33 10.60 -52.18 -0.55 -8.88 16 18 N -0.66 -16.01 6.58 -187.50 -1.23 -17.25 16 19 C 0.15 3.00 7.06 86.38 0.61 3.61 16 20 C 0.07 0.86 7.18 71.98 0.52 1.38 16 21 O -0.60 -8.53 13.61 -148.98 -2.03 -10.55 16 22 C -0.04 -1.00 9.78 22.52 0.22 -0.78 16 23 C -0.21 -6.80 9.19 22.36 0.21 -6.59 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.09 2.35 6.18 -2.39 -0.01 2.34 16 26 H 0.06 2.06 7.89 -2.39 -0.02 2.04 16 27 H 0.01 0.73 7.89 -2.38 -0.02 0.71 16 28 H 0.01 0.63 6.19 -2.39 -0.01 0.62 16 29 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.10 4.83 6.13 -2.91 -0.02 4.81 16 31 H 0.11 4.38 7.55 -2.91 -0.02 4.36 16 32 H 0.13 2.66 8.02 -2.91 -0.02 2.64 16 33 H 0.38 7.81 8.43 -213.31 -1.80 6.01 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.40 1.70 9.12 -74.06 -0.68 1.03 16 39 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 40 H 0.14 3.73 6.12 -2.91 -0.02 3.71 16 Total: -1.00 -72.30 341.48 0.39 -71.91 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -1.41 Total: 17.53 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 5.48 Total: -15.38 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.67 Total: -110.54 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -2.03 Total: -10.55 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -72.30 0.39 -71.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814942604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.813 kcal (2) G-P(sol) polarization free energy of solvation -72.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds