Wall clock time and date at job start Mon Mar 30 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46903 * 2 1 4 4 N 1.28598 * 124.62305 * 90.02356 * 3 2 1 5 5 C 1.31377 * 108.71819 * 179.97438 * 4 3 2 6 6 C 1.50706 * 127.04465 * 180.02562 * 5 4 3 7 7 C 1.39669 * 105.90179 * 0.26283 * 5 4 3 8 8 C 1.50700 * 127.04934 * 179.73732 * 7 5 4 9 9 N 1.46903 * 109.47320 * 90.00126 * 8 7 5 10 10 C 1.46897 * 111.00197 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47181 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.47133 * 54.99975 * 11 10 9 13 13 C 1.47198 * 109.47118 * 294.99871 * 11 10 9 14 14 N 8.44458 * 137.62066 * 351.13705 * 2 1 3 15 15 C 1.52998 * 109.46986 * 174.99624 * 11 10 9 16 16 C 1.50707 * 109.47034 * 185.00063 * 15 11 10 17 17 H 1.07995 * 120.00125 * 359.97438 * 16 15 11 18 18 C 1.37871 * 119.99879 * 180.02562 * 16 15 11 19 19 N 1.31519 * 119.99742 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00401 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46906 * 89.99762 * 20 18 16 22 22 H 1.48501 * 109.47041 * 209.99830 * 20 18 16 23 23 H 1.48500 * 109.46813 * 330.00293 * 20 18 16 24 24 N 1.28600 * 124.61491 * 270.02336 * 3 2 1 25 25 H 1.08990 * 109.47355 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46918 * 300.00445 * 1 2 3 27 27 H 1.09000 * 109.47453 * 59.99777 * 1 2 3 28 28 H 1.08996 * 109.46794 * 240.00409 * 2 1 3 29 29 H 1.08998 * 109.47126 * 119.99529 * 2 1 3 30 30 H 1.08999 * 109.46995 * 90.02666 * 6 5 4 31 31 H 1.08994 * 109.46790 * 210.02353 * 6 5 4 32 32 H 1.08997 * 109.47305 * 330.02793 * 6 5 4 33 33 H 1.09000 * 109.47553 * 210.00271 * 8 7 5 34 34 H 1.09002 * 109.47445 * 329.99878 * 8 7 5 35 35 H 1.00896 * 110.99953 * 303.95460 * 9 8 7 36 36 H 1.09000 * 109.46931 * 299.99987 * 10 9 8 37 37 H 1.08998 * 109.47256 * 59.99523 * 10 9 8 38 38 H 1.09002 * 109.47581 * 304.99864 * 15 11 10 39 39 H 1.08999 * 109.47366 * 65.00628 * 15 11 10 40 40 H 0.97004 * 119.99843 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2623 2.0700 1.0582 5 6 2.6838 3.2611 0.6982 6 6 3.0857 4.3948 1.6062 7 6 2.6777 3.2632 -0.6985 8 6 3.0713 4.3997 -1.6065 9 7 4.5064 4.3113 -1.9079 10 6 4.9270 5.4061 -2.7924 11 6 6.4237 5.2801 -3.0836 12 1 6.6331 4.2897 -3.4880 13 6 7.1838 5.4721 -1.8377 14 7 7.7680 5.6240 -0.8770 15 6 6.8364 6.3446 -4.1021 16 6 8.2810 6.1435 -4.4814 17 1 8.8481 5.3374 -4.0399 18 6 8.8790 6.9893 -5.3913 19 7 10.1398 6.8141 -5.7220 20 14 7.8984 8.3841 -6.1546 21 1 8.0300 9.6003 -5.3126 22 1 8.4176 8.6666 -7.5169 23 1 6.4681 7.9942 -6.2408 24 7 2.2614 2.0702 -1.0584 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 4.1514 4.3253 1.8242 31 1 2.8764 5.3451 1.1153 32 1 2.5201 4.3337 2.5359 33 1 2.5010 4.3386 -2.5333 34 1 2.8615 5.3486 -1.1128 35 1 5.0538 4.3008 -1.0605 36 1 4.3695 5.3523 -3.7275 37 1 4.7301 6.3617 -2.3065 38 1 6.2119 6.2583 -4.9913 39 1 6.7103 7.3348 -3.6641 40 1 10.5606 7.4094 -6.3619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818116403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:22 Heat of formation + Delta-G solvation = 120.007809 kcal Electronic energy + Delta-G solvation = -20526.060004 eV Core-core repulsion = 17378.231093 eV Total energy + Delta-G solvation = -3147.828910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.66158 -37.67039 -35.92669 -34.89793 -33.64977 -32.92231 -32.13433 -31.08288 -28.40545 -27.60961 -25.57826 -23.38803 -22.61642 -21.56733 -21.17932 -20.94130 -17.45166 -16.96734 -16.84995 -16.59357 -15.88367 -14.95784 -14.87837 -14.13094 -14.09494 -14.04708 -13.60856 -13.47538 -13.12757 -13.04153 -12.76717 -12.68881 -12.51156 -12.33992 -12.28092 -11.89035 -11.77487 -11.45589 -11.18907 -11.07305 -10.86931 -10.83952 -10.30801 -10.22975 -9.98230 -9.78991 -9.32322 -9.13557 -8.60666 -8.41335 -6.09468 -4.10164 1.70408 2.12204 2.23549 3.27769 3.35280 3.35929 3.54193 3.58873 3.84855 4.28855 4.39219 4.44520 4.48870 4.65000 4.70381 4.71736 4.88432 5.05053 5.12458 5.21697 5.25166 5.36468 5.40202 5.46891 5.56705 5.59756 5.66333 5.70636 6.01925 6.08370 6.13982 6.17573 6.36410 6.60647 6.95070 6.96446 7.13707 7.33110 7.64699 8.26374 8.34590 8.43676 8.94284 9.50228 11.03687 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.003116 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.109262 B = 8984.629128 C = 9233.114552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 N -0.159 5.159 4 N -0.293 5.293 5 C 0.005 3.995 6 C -0.066 4.066 7 C 0.009 3.991 8 C 0.148 3.852 9 N -0.685 5.685 10 C 0.066 3.934 11 C 0.017 3.983 12 H 0.117 0.883 13 C 0.238 3.762 14 N -0.468 5.468 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.262 1.262 24 N -0.267 5.267 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.341 0.659 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.020 0.980 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.966 -9.435 10.417 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 N -0.059 5.059 4 N -0.135 5.135 5 C -0.159 4.159 6 C -0.125 4.125 7 C -0.155 4.155 8 C 0.017 3.983 9 N -0.317 5.317 10 C -0.064 4.064 11 C -0.005 4.005 12 H 0.134 0.866 13 C -0.079 4.079 14 N -0.145 5.145 15 C -0.043 4.043 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.186 1.186 24 N -0.109 5.109 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.498 -10.937 11.236 26.609 hybrid contribution -0.143 2.146 -0.257 2.166 sum -21.641 -8.791 10.979 25.810 Atomic orbital electron populations 1.22176 0.93312 1.03745 1.03572 1.21934 0.95823 0.74657 1.05735 1.47980 1.45378 1.13230 0.99350 1.73943 1.18333 1.05166 1.16059 1.23084 1.04442 0.94409 0.93921 1.20082 1.02125 0.92852 0.97451 1.22881 1.05117 0.94309 0.93154 1.20052 0.90041 0.91103 0.97090 1.60505 1.02710 1.47603 1.20857 1.22125 0.94925 0.91510 0.97842 1.19073 0.89688 1.04499 0.87280 0.86561 1.29110 0.93085 0.91986 0.93709 1.80991 1.09497 1.10125 1.13838 1.19635 0.98515 0.92822 0.93305 1.21037 0.94017 1.16120 1.25391 0.90802 1.25000 0.94741 0.97357 0.96077 1.69912 1.11460 1.38527 1.33664 0.86807 0.81045 0.82834 0.78794 1.20321 1.21284 1.18620 1.74009 1.16704 1.04721 1.15471 0.89687 0.91587 0.91391 0.87345 0.87597 0.90288 0.90321 0.90688 0.88967 0.92917 0.84091 0.88750 0.94361 0.94199 0.96217 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.14 0.99 7.26 -4.04 -0.03 0.96 16 3 N -0.16 -1.88 3.95 -10.61 -0.04 -1.92 16 4 N -0.29 -3.75 12.05 33.71 0.41 -3.34 16 5 C 0.00 0.06 7.35 -82.25 -0.60 -0.55 16 6 C -0.07 -0.61 10.34 36.01 0.37 -0.24 16 7 C 0.01 0.11 6.87 -82.25 -0.56 -0.45 16 8 C 0.15 1.65 6.14 -4.97 -0.03 1.62 16 9 N -0.68 -8.91 6.49 -115.06 -0.75 -9.66 16 10 C 0.07 0.88 5.12 -3.83 -0.02 0.86 16 11 C 0.02 0.29 2.42 -93.41 -0.23 0.06 16 12 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 13 C 0.24 4.72 12.97 -20.81 -0.27 4.45 16 14 N -0.47 -10.10 18.53 42.10 0.78 -9.32 16 15 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 16 C -0.53 -14.20 9.15 -34.44 -0.32 -14.51 16 17 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 20 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 24 N -0.27 -3.58 12.05 33.71 0.41 -3.17 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.61 7.50 -51.93 -0.39 0.22 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.49 7.50 -51.93 -0.39 0.10 16 35 H 0.34 4.68 7.80 -39.29 -0.31 4.38 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 39 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -33.80 345.32 -5.47 -39.27 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.08 Total: 0.10 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.50 Total: -6.67 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 1.58 Total: -53.78 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.80 -5.47 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818116403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.279 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds