Wall clock time and date at job start Mon Mar 30 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46903 * 2 1 4 4 N 1.28598 * 124.62305 * 90.02356 * 3 2 1 5 5 C 1.31377 * 108.71819 * 179.97438 * 4 3 2 6 6 C 1.50706 * 127.04465 * 180.02562 * 5 4 3 7 7 C 1.39669 * 105.90179 * 0.26283 * 5 4 3 8 8 C 1.50700 * 127.04934 * 179.73732 * 7 5 4 9 9 N 1.46903 * 109.47320 * 90.00126 * 8 7 5 10 10 C 1.46897 * 111.00197 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47181 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.47133 * 54.99975 * 11 10 9 13 13 C 1.47198 * 109.47118 * 294.99871 * 11 10 9 14 14 N 8.44458 * 137.62066 * 351.13705 * 2 1 3 15 15 C 1.52998 * 109.46986 * 174.99624 * 11 10 9 16 16 C 1.50707 * 109.47034 * 185.00063 * 15 11 10 17 17 H 1.07995 * 120.00125 * 359.97438 * 16 15 11 18 18 C 1.37871 * 119.99879 * 180.02562 * 16 15 11 19 19 N 1.31519 * 119.99742 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00401 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46906 * 89.99762 * 20 18 16 22 22 H 1.48501 * 109.47041 * 209.99830 * 20 18 16 23 23 H 1.48500 * 109.46813 * 330.00293 * 20 18 16 24 24 N 1.28600 * 124.61491 * 270.02336 * 3 2 1 25 25 H 1.08990 * 109.47355 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46918 * 300.00445 * 1 2 3 27 27 H 1.09000 * 109.47453 * 59.99777 * 1 2 3 28 28 H 1.08996 * 109.46794 * 240.00409 * 2 1 3 29 29 H 1.08998 * 109.47126 * 119.99529 * 2 1 3 30 30 H 1.08999 * 109.46995 * 90.02666 * 6 5 4 31 31 H 1.08994 * 109.46790 * 210.02353 * 6 5 4 32 32 H 1.08997 * 109.47305 * 330.02793 * 6 5 4 33 33 H 1.09000 * 109.47553 * 210.00271 * 8 7 5 34 34 H 1.09002 * 109.47445 * 329.99878 * 8 7 5 35 35 H 1.00896 * 110.99953 * 303.95460 * 9 8 7 36 36 H 1.09000 * 109.46931 * 299.99987 * 10 9 8 37 37 H 1.08998 * 109.47256 * 59.99523 * 10 9 8 38 38 H 1.09002 * 109.47581 * 304.99864 * 15 11 10 39 39 H 1.08999 * 109.47366 * 65.00628 * 15 11 10 40 40 H 0.97004 * 119.99843 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2623 2.0700 1.0582 5 6 2.6838 3.2611 0.6982 6 6 3.0857 4.3948 1.6062 7 6 2.6777 3.2632 -0.6985 8 6 3.0713 4.3997 -1.6065 9 7 4.5064 4.3113 -1.9079 10 6 4.9270 5.4061 -2.7924 11 6 6.4237 5.2801 -3.0836 12 1 6.6331 4.2897 -3.4880 13 6 7.1838 5.4721 -1.8377 14 7 7.7680 5.6240 -0.8770 15 6 6.8364 6.3446 -4.1021 16 6 8.2810 6.1435 -4.4814 17 1 8.8481 5.3374 -4.0399 18 6 8.8790 6.9893 -5.3913 19 7 10.1398 6.8141 -5.7220 20 14 7.8984 8.3841 -6.1546 21 1 8.0300 9.6003 -5.3126 22 1 8.4176 8.6666 -7.5169 23 1 6.4681 7.9942 -6.2408 24 7 2.2614 2.0702 -1.0584 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 4.1514 4.3253 1.8242 31 1 2.8764 5.3451 1.1153 32 1 2.5201 4.3337 2.5359 33 1 2.5010 4.3386 -2.5333 34 1 2.8615 5.3486 -1.1128 35 1 5.0538 4.3008 -1.0605 36 1 4.3695 5.3523 -3.7275 37 1 4.7301 6.3617 -2.3065 38 1 6.2119 6.2583 -4.9913 39 1 6.7103 7.3348 -3.6641 40 1 10.5606 7.4094 -6.3619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818116403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:22 Heat of formation + Delta-G solvation = 95.424427 kcal Electronic energy + Delta-G solvation = -20527.126019 eV Core-core repulsion = 17378.231093 eV Total energy + Delta-G solvation = -3148.894926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.52528 -38.97125 -37.02842 -35.93517 -35.27437 -33.95029 -33.51670 -32.13484 -29.51734 -28.66282 -26.79381 -24.18193 -23.68981 -23.26283 -22.08338 -21.83402 -18.92071 -18.33263 -18.14914 -17.50568 -16.98446 -16.42961 -15.57478 -15.54472 -15.08208 -14.90639 -14.80288 -14.59935 -14.32862 -14.19820 -13.97186 -13.91868 -13.47988 -13.35172 -13.22484 -13.11847 -13.00799 -12.55645 -12.49244 -12.30498 -12.00381 -11.84156 -11.76363 -11.68531 -11.56432 -11.29607 -11.09999 -10.70962 -9.97702 -9.35329 -8.22149 -6.27933 0.82011 1.33168 1.44476 1.46321 1.47810 1.59126 1.97666 1.99136 2.44038 3.06050 3.14294 3.26927 3.33569 3.76911 3.94224 3.94732 4.05870 4.14718 4.23899 4.36341 4.46089 4.57109 4.68782 4.70333 4.71384 4.77195 4.89717 4.93849 4.97180 5.01431 5.11041 5.25080 5.30010 5.36317 5.50198 5.66494 5.81846 6.02459 6.27963 6.30801 6.77125 6.83176 7.36524 7.37961 8.94992 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.003116 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.109262 B = 8984.629128 C = 9233.114552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 N -0.159 5.159 4 N -0.311 5.311 5 C -0.007 4.007 6 C -0.065 4.065 7 C -0.004 4.004 8 C 0.151 3.849 9 N -0.695 5.695 10 C 0.077 3.923 11 C 0.022 3.978 12 H 0.114 0.886 13 C 0.248 3.752 14 N -0.505 5.505 15 C -0.002 4.002 16 C -0.531 4.531 17 H 0.026 0.974 18 C 0.000 4.000 19 N -0.957 5.957 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.219 1.219 24 N -0.289 5.289 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.335 0.665 36 H 0.118 0.882 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.048 -8.706 10.138 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 N -0.061 5.061 4 N -0.154 5.154 5 C -0.170 4.170 6 C -0.123 4.123 7 C -0.167 4.167 8 C 0.021 3.979 9 N -0.326 5.326 10 C -0.052 4.052 11 C 0.000 4.000 12 H 0.132 0.868 13 C -0.068 4.068 14 N -0.183 5.183 15 C -0.041 4.041 16 C -0.569 4.569 17 H 0.044 0.956 18 C -0.197 4.197 19 N -0.598 5.598 20 Si 0.773 3.227 21 H -0.201 1.201 22 H -0.218 1.218 23 H -0.141 1.141 24 N -0.132 5.132 25 H 0.132 0.868 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.620 -10.229 10.974 28.830 hybrid contribution 0.873 1.765 -0.110 1.972 sum -23.747 -8.464 10.864 27.451 Atomic orbital electron populations 1.22123 0.92050 1.05259 1.02393 1.22372 0.96885 0.73098 1.07021 1.48463 1.44724 1.14140 0.98771 1.73918 1.19004 1.05760 1.16728 1.23550 1.04171 0.94869 0.94364 1.20174 1.01933 0.92662 0.97567 1.23174 1.05322 0.94574 0.93656 1.20126 0.88660 0.91557 0.97529 1.60462 1.03813 1.47675 1.20681 1.22033 0.91488 0.92401 0.99303 1.19119 0.92423 1.03162 0.85259 0.86849 1.29673 0.92342 0.90976 0.93812 1.80989 1.10707 1.11265 1.15319 1.19590 0.94891 0.94332 0.95260 1.21435 0.96863 1.14240 1.24393 0.95611 1.26092 0.95787 1.00791 0.96981 1.70105 1.14032 1.40426 1.35230 0.85669 0.81462 0.78518 0.77075 1.20125 1.21830 1.14111 1.73960 1.17434 1.05385 1.16400 0.86805 0.92591 0.92580 0.86253 0.86153 0.90606 0.88628 0.89863 0.88166 0.90641 0.84816 0.86383 0.92733 0.91479 0.95208 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.24 71.98 0.74 -0.85 16 2 C 0.12 1.65 7.26 86.38 0.63 2.27 16 3 N -0.16 -3.63 3.95 -187.50 -0.74 -4.37 16 4 N -0.31 -7.74 12.05 -47.25 -0.57 -8.31 16 5 C -0.01 -0.16 7.35 42.98 0.32 0.16 16 6 C -0.06 -1.09 10.34 71.24 0.74 -0.35 16 7 C 0.00 -0.11 6.87 42.97 0.30 0.19 16 8 C 0.15 2.95 6.14 85.56 0.53 3.48 16 9 N -0.69 -16.34 6.49 -517.94 -3.36 -19.70 16 10 C 0.08 1.78 5.12 86.30 0.44 2.23 16 11 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 12 H 0.11 3.84 8.14 -2.38 -0.02 3.82 16 13 C 0.25 9.68 12.97 89.46 1.16 10.84 16 14 N -0.51 -21.86 18.53 19.99 0.37 -21.49 16 15 C 0.00 -0.07 3.49 29.85 0.10 0.04 16 16 C -0.53 -28.70 9.15 25.60 0.23 -28.46 16 17 H 0.03 1.59 7.84 -2.91 -0.02 1.56 16 18 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 19 N -0.96 -59.65 13.96 21.45 0.30 -59.36 16 20 Si 0.95 41.11 27.47 68.60 1.88 42.99 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.22 -7.93 6.54 99.48 0.65 -7.27 16 24 N -0.29 -7.44 12.05 -47.25 -0.57 -8.01 16 25 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.25 7.50 -2.39 -0.02 1.23 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.13 7.50 -2.39 -0.02 1.12 16 35 H 0.33 8.63 7.80 -89.70 -0.70 7.93 16 36 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 2.35 7.20 -2.39 -0.02 2.33 16 39 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 40 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -75.64 345.32 3.21 -72.43 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.29 Total: 15.13 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 5.61 Total: -9.32 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -4.57 Total: -121.23 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.88 Total: 42.99 kcal Total: -75.64 3.21 -72.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818116403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.857 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds