Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35902 * 117.00107 * 2 1 4 4 C 1.38809 * 120.01730 * 359.72911 * 3 2 1 5 5 C 1.38175 * 120.08585 * 179.69409 * 4 3 2 6 6 C 1.38157 * 120.12412 * 0.59855 * 5 4 3 7 7 C 1.38904 * 120.04103 * 359.67943 * 6 5 4 8 8 N 1.39874 * 120.04363 * 180.02562 * 7 6 5 9 9 C 1.37656 * 119.99466 * 213.17488 * 8 7 6 10 10 N 1.30337 * 120.00552 * 5.59796 * 9 8 7 11 11 N 1.37510 * 119.99808 * 185.59938 * 9 8 7 12 12 C 1.46496 * 120.00118 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47265 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47406 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47298 * 179.97438 * 14 13 12 16 16 H 1.07993 * 119.99827 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99808 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99569 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00166 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47001 * 89.99978 * 19 17 15 21 21 H 1.48509 * 109.47064 * 209.99668 * 19 17 15 22 22 H 1.48497 * 109.47125 * 329.99870 * 19 17 15 23 23 C 1.38575 * 120.02298 * 179.97438 * 3 2 1 24 24 H 1.08993 * 109.47365 * 299.99557 * 1 2 3 25 25 H 1.09004 * 109.47114 * 59.99911 * 1 2 3 26 26 H 1.09007 * 109.47056 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.95636 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.93320 * 180.29979 * 5 4 3 29 29 H 1.07996 * 119.98283 * 179.69909 * 6 5 4 30 30 H 0.96991 * 120.00535 * 33.17048 * 8 7 6 31 31 H 0.96998 * 120.00419 * 180.02562 * 10 9 8 32 32 H 0.97004 * 119.99484 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47388 * 300.00413 * 12 11 9 34 34 H 1.09000 * 109.47022 * 60.00256 * 12 11 9 35 35 H 1.09001 * 109.47137 * 300.00423 * 13 12 11 36 36 H 1.09000 * 109.47010 * 60.00104 * 13 12 11 37 37 H 1.09001 * 109.47431 * 300.00381 * 14 13 12 38 38 H 1.09000 * 109.46838 * 60.00137 * 14 13 12 39 39 H 0.96998 * 119.99807 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.06031 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3753 -0.0057 5 6 1.9161 3.6072 0.0007 6 6 3.2955 3.6841 0.0003 7 6 4.0568 2.5223 0.0001 8 7 5.4534 2.6002 0.0002 9 6 6.1961 1.6422 -0.6522 10 7 5.5992 0.7254 -1.3607 11 7 7.5678 1.6526 -0.5565 12 6 8.3582 0.6328 -1.2504 13 6 9.8456 0.8697 -0.9810 14 6 10.6711 -0.1957 -1.7051 15 6 12.1361 0.0380 -1.4402 16 1 12.4472 0.8635 -0.8174 17 6 13.0792 -0.8022 -1.9932 18 7 14.3577 -0.5985 -1.7616 19 14 12.5410 -2.2296 -3.0711 20 1 12.4714 -1.7830 -4.4857 21 1 13.5213 -3.3386 -2.9499 22 1 11.2025 -2.7022 -2.6349 23 6 3.4298 1.2839 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2118 2.3183 -0.0105 28 1 1.3258 4.5116 0.0011 29 1 3.7823 4.6482 0.0003 30 1 5.8985 3.3290 0.4599 31 1 6.1226 0.0502 -1.8202 32 1 8.0120 2.3347 -0.0289 33 1 8.0763 -0.3553 -0.8866 34 1 8.1687 0.6932 -2.3221 35 1 10.1278 1.8578 -1.3444 36 1 10.0348 0.8090 0.0908 37 1 10.3887 -1.1837 -1.3413 38 1 10.4819 -0.1355 -2.7769 39 1 15.0212 -1.1893 -2.1509 40 1 4.0193 0.3790 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849003239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = 17.856201 kcal Electronic energy + Delta-G solvation = -20175.215903 eV Core-core repulsion = 16990.664615 eV Total energy + Delta-G solvation = -3184.551288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36140 -38.98544 -37.39246 -35.26792 -33.51116 -31.98980 -30.95591 -30.38542 -29.16779 -27.43234 -26.86495 -23.52813 -22.64334 -21.86428 -20.48124 -20.24052 -18.69753 -17.61424 -16.83302 -16.29634 -16.06655 -16.01680 -15.83461 -15.17435 -15.05550 -14.45611 -14.14468 -13.88962 -13.53232 -13.24419 -12.76585 -12.73133 -12.41746 -12.07347 -11.97023 -11.84564 -11.28849 -11.16088 -11.08721 -10.92102 -10.17551 -9.97673 -9.81848 -9.73259 -9.29285 -9.27692 -8.59920 -8.35987 -8.22043 -7.78373 -6.10362 -4.09587 1.27524 1.41684 2.59231 3.03879 3.20962 3.27708 3.35643 3.38549 3.80614 3.99769 4.40204 4.68858 4.90305 4.93529 4.96303 5.09810 5.22907 5.23318 5.25180 5.34452 5.48983 5.50516 5.55048 5.84656 5.98935 6.19826 6.22653 6.32375 6.33770 6.42261 6.48488 6.68023 6.75685 6.98164 7.15369 7.28970 7.30072 7.38483 7.70978 7.97064 8.45626 8.77120 8.93206 9.51439 11.02846 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033487 B = 0.002657 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.933547 B =10535.146066 C =11223.919710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.141 3.859 4 C -0.236 4.236 5 C -0.064 4.064 6 C -0.195 4.195 7 C 0.225 3.775 8 N -0.666 5.666 9 C 0.624 3.376 10 N -0.811 5.811 11 N -0.766 5.766 12 C 0.125 3.875 13 C -0.109 4.109 14 C -0.011 4.011 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.143 4.143 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.413 0.587 31 H 0.343 0.657 32 H 0.391 0.609 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.014 0.986 39 H 0.264 0.736 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.127 7.422 5.073 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.095 3.905 4 C -0.255 4.255 5 C -0.082 4.082 6 C -0.216 4.216 7 C 0.128 3.872 8 N -0.300 5.300 9 C 0.257 3.743 10 N -0.459 5.459 11 N -0.410 5.410 12 C 0.001 3.999 13 C -0.147 4.147 14 C -0.049 4.049 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.250 0.750 31 H 0.161 0.839 32 H 0.224 0.776 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -27.823 6.735 4.677 29.006 hybrid contribution 1.109 -0.167 -0.345 1.173 sum -26.714 6.568 4.332 27.849 Atomic orbital electron populations 1.23016 0.78753 1.03696 1.01148 1.86094 1.21004 1.27087 1.88695 1.18798 0.91908 0.83952 0.95799 1.21112 0.99721 0.92429 1.12287 1.20572 0.93634 0.96861 0.97180 1.20717 0.93935 0.96850 1.10136 1.17047 0.81375 0.92858 0.95957 1.41266 1.03417 1.28105 1.57176 1.18740 0.79237 0.88292 0.88006 1.69742 1.39243 1.12823 1.24094 1.45638 1.03302 1.35076 1.57015 1.21559 0.92349 0.90059 0.95931 1.21642 0.90227 1.01346 1.01506 1.19506 0.95960 0.94098 0.95291 1.21072 0.88758 1.14572 1.31725 0.91022 1.25037 0.94805 0.97567 0.96094 1.69912 1.00322 1.38780 1.45051 0.86764 0.78879 0.82417 0.81144 1.20235 1.21326 1.18932 1.20398 0.91176 0.98870 1.06056 0.92836 0.92773 0.88465 0.85924 0.85825 0.85973 0.75046 0.83861 0.77555 0.92326 0.92365 0.92050 0.92007 0.96314 0.96771 0.92647 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.77 10.49 -19.43 -0.20 -3.97 16 3 C 0.14 1.75 6.68 -39.25 -0.26 1.48 16 4 C -0.24 -2.36 9.04 -39.39 -0.36 -2.71 16 5 C -0.06 -0.58 10.03 -39.63 -0.40 -0.98 16 6 C -0.19 -1.94 9.96 -39.36 -0.39 -2.33 16 7 C 0.22 2.71 6.29 -83.73 -0.53 2.18 16 8 N -0.67 -7.38 5.46 -11.16 -0.06 -7.44 16 9 C 0.62 8.47 8.45 -319.81 -2.70 5.77 16 10 N -0.81 -12.56 10.76 30.19 0.32 -12.24 16 11 N -0.77 -9.83 5.67 -61.74 -0.35 -10.18 16 12 C 0.12 1.88 5.02 -4.05 -0.02 1.86 16 13 C -0.11 -1.96 5.27 -26.73 -0.14 -2.10 16 14 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 15 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 16 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 19 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 23 C -0.14 -1.96 8.52 -39.25 -0.33 -2.29 16 24 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 25 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 26 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 27 H 0.12 0.93 6.29 -52.49 -0.33 0.60 16 28 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 29 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.41 3.28 8.92 -40.82 -0.36 2.91 16 31 H 0.34 5.32 7.15 -40.82 -0.29 5.03 16 32 H 0.39 4.24 8.58 -40.82 -0.35 3.89 16 33 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 34 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 38 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.15 2.35 6.28 -52.48 -0.33 2.03 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -32.57 332.88 -9.61 -42.18 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.76 Total: 7.93 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -4.68 Total: -11.33 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.69 Total: -56.59 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.20 Total: -3.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.57 -9.61 -42.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849003239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.036 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds