Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35902 * 117.00107 * 2 1 4 4 C 1.38809 * 120.01730 * 359.72911 * 3 2 1 5 5 C 1.38175 * 120.08585 * 179.69409 * 4 3 2 6 6 C 1.38157 * 120.12412 * 0.59855 * 5 4 3 7 7 C 1.38904 * 120.04103 * 359.67943 * 6 5 4 8 8 N 1.39874 * 120.04363 * 180.02562 * 7 6 5 9 9 C 1.37656 * 119.99466 * 213.17488 * 8 7 6 10 10 N 1.30337 * 120.00552 * 5.59796 * 9 8 7 11 11 N 1.37510 * 119.99808 * 185.59938 * 9 8 7 12 12 C 1.46496 * 120.00118 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47265 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47406 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47298 * 179.97438 * 14 13 12 16 16 H 1.07993 * 119.99827 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99808 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99569 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00166 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47001 * 89.99978 * 19 17 15 21 21 H 1.48509 * 109.47064 * 209.99668 * 19 17 15 22 22 H 1.48497 * 109.47125 * 329.99870 * 19 17 15 23 23 C 1.38575 * 120.02298 * 179.97438 * 3 2 1 24 24 H 1.08993 * 109.47365 * 299.99557 * 1 2 3 25 25 H 1.09004 * 109.47114 * 59.99911 * 1 2 3 26 26 H 1.09007 * 109.47056 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.95636 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.93320 * 180.29979 * 5 4 3 29 29 H 1.07996 * 119.98283 * 179.69909 * 6 5 4 30 30 H 0.96991 * 120.00535 * 33.17048 * 8 7 6 31 31 H 0.96998 * 120.00419 * 180.02562 * 10 9 8 32 32 H 0.97004 * 119.99484 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47388 * 300.00413 * 12 11 9 34 34 H 1.09000 * 109.47022 * 60.00256 * 12 11 9 35 35 H 1.09001 * 109.47137 * 300.00423 * 13 12 11 36 36 H 1.09000 * 109.47010 * 60.00104 * 13 12 11 37 37 H 1.09001 * 109.47431 * 300.00381 * 14 13 12 38 38 H 1.09000 * 109.46838 * 60.00137 * 14 13 12 39 39 H 0.96998 * 119.99807 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.06031 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3753 -0.0057 5 6 1.9161 3.6072 0.0007 6 6 3.2955 3.6841 0.0003 7 6 4.0568 2.5223 0.0001 8 7 5.4534 2.6002 0.0002 9 6 6.1961 1.6422 -0.6522 10 7 5.5992 0.7254 -1.3607 11 7 7.5678 1.6526 -0.5565 12 6 8.3582 0.6328 -1.2504 13 6 9.8456 0.8697 -0.9810 14 6 10.6711 -0.1957 -1.7051 15 6 12.1361 0.0380 -1.4402 16 1 12.4472 0.8635 -0.8174 17 6 13.0792 -0.8022 -1.9932 18 7 14.3577 -0.5985 -1.7616 19 14 12.5410 -2.2296 -3.0711 20 1 12.4714 -1.7830 -4.4857 21 1 13.5213 -3.3386 -2.9499 22 1 11.2025 -2.7022 -2.6349 23 6 3.4298 1.2839 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2118 2.3183 -0.0105 28 1 1.3258 4.5116 0.0011 29 1 3.7823 4.6482 0.0003 30 1 5.8985 3.3290 0.4599 31 1 6.1226 0.0502 -1.8202 32 1 8.0120 2.3347 -0.0289 33 1 8.0763 -0.3553 -0.8866 34 1 8.1687 0.6932 -2.3221 35 1 10.1278 1.8578 -1.3444 36 1 10.0348 0.8090 0.0908 37 1 10.3887 -1.1837 -1.3413 38 1 10.4819 -0.1355 -2.7769 39 1 15.0212 -1.1893 -2.1509 40 1 4.0193 0.3790 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849003239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = -2.261961 kcal Electronic energy + Delta-G solvation = -20176.088292 eV Core-core repulsion = 16990.664615 eV Total energy + Delta-G solvation = -3185.423677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18210 -39.92546 -38.33130 -36.52453 -35.10026 -33.61918 -32.10519 -31.37256 -30.09905 -28.57291 -27.93431 -24.95231 -23.64448 -22.77817 -22.10661 -21.26499 -19.56638 -19.00648 -18.52714 -17.23260 -16.95450 -16.82671 -16.54909 -16.47320 -16.34961 -15.91555 -15.23083 -15.07301 -14.78739 -14.31814 -14.27265 -13.82642 -13.71482 -13.20931 -13.06905 -12.74784 -12.69588 -12.56456 -12.03368 -11.86465 -11.82552 -11.75165 -11.58958 -11.35149 -10.77477 -10.72167 -10.37579 -9.35038 -9.11895 -8.69834 -8.30513 -6.34855 0.44978 0.61393 1.36638 1.38355 1.49796 1.63658 2.00987 2.35468 2.48073 2.97410 3.02939 3.05316 4.00194 4.02675 4.15424 4.24490 4.33995 4.38976 4.43904 4.44881 4.48523 4.63677 4.72056 4.77101 4.79951 4.84922 5.00152 5.16007 5.39611 5.41973 5.48152 5.53710 5.53793 5.59847 5.64324 5.81602 6.06608 6.25939 6.42698 6.59854 6.73513 6.98984 7.30040 7.71715 8.85996 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033487 B = 0.002657 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.933547 B =10535.146066 C =11223.919710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.125 3.875 4 C -0.234 4.234 5 C -0.060 4.060 6 C -0.193 4.193 7 C 0.209 3.791 8 N -0.655 5.655 9 C 0.626 3.374 10 N -0.836 5.836 11 N -0.758 5.758 12 C 0.139 3.861 13 C -0.097 4.097 14 C -0.011 4.011 15 C -0.532 4.532 16 H 0.035 0.965 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.950 3.050 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.245 1.245 23 C -0.173 4.173 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.148 0.852 28 H 0.158 0.842 29 H 0.147 0.853 30 H 0.427 0.573 31 H 0.339 0.661 32 H 0.402 0.598 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.023 0.977 38 H 0.022 0.978 39 H 0.266 0.734 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.886 8.257 4.738 31.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C 0.079 3.921 4 C -0.254 4.254 5 C -0.078 4.078 6 C -0.214 4.214 7 C 0.112 3.888 8 N -0.291 5.291 9 C 0.258 3.742 10 N -0.484 5.484 11 N -0.404 5.404 12 C 0.015 3.985 13 C -0.135 4.135 14 C -0.049 4.049 15 C -0.570 4.570 16 H 0.053 0.947 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.773 3.227 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.168 1.168 23 C -0.195 4.195 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.165 0.835 28 H 0.176 0.824 29 H 0.165 0.835 30 H 0.267 0.733 31 H 0.156 0.844 32 H 0.238 0.762 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -30.609 7.614 4.374 31.844 hybrid contribution 1.919 -0.346 -0.164 1.957 sum -28.690 7.267 4.210 29.894 Atomic orbital electron populations 1.23304 0.76531 1.05226 1.02317 1.86052 1.23453 1.27503 1.88815 1.18991 0.91802 0.84956 0.96345 1.21429 1.00941 0.91877 1.11134 1.21034 0.93637 0.97806 0.95351 1.21034 0.94380 0.97007 1.08978 1.17254 0.81636 0.93163 0.96766 1.41213 1.03256 1.27853 1.56747 1.18844 0.79359 0.88285 0.87684 1.69809 1.39611 1.13617 1.25390 1.45382 1.03091 1.34924 1.56970 1.21216 0.90498 0.90593 0.96211 1.21402 0.91520 0.99788 1.00773 1.19462 0.93358 0.95778 0.96308 1.21466 0.91729 1.13236 1.30570 0.94694 1.26026 0.94717 1.00836 0.97846 1.70067 1.01790 1.40439 1.46888 0.85663 0.79236 0.78517 0.79269 1.19215 1.21196 1.16827 1.20358 0.92034 0.98618 1.08538 0.91357 0.91753 0.86952 0.83472 0.82407 0.83484 0.73306 0.84424 0.76228 0.92425 0.92267 0.92015 0.92126 0.95916 0.95990 0.92519 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.20 10.49 -92.45 -0.97 -9.17 16 3 C 0.12 3.03 6.68 22.49 0.15 3.18 16 4 C -0.23 -4.14 9.04 22.39 0.20 -3.94 16 5 C -0.06 -0.90 10.03 22.24 0.22 -0.68 16 6 C -0.19 -3.32 9.96 22.41 0.22 -3.10 16 7 C 0.21 4.81 6.29 38.15 0.24 5.05 16 8 N -0.66 -13.75 5.46 -189.22 -1.03 -14.78 16 9 C 0.63 16.51 8.45 260.44 2.20 18.71 16 10 N -0.84 -25.97 10.76 -58.41 -0.63 -26.59 16 11 N -0.76 -18.50 5.67 -349.25 -1.98 -20.48 16 12 C 0.14 4.03 5.02 86.38 0.43 4.46 16 13 C -0.10 -3.38 5.27 30.59 0.16 -3.22 16 14 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 15 C -0.53 -29.98 9.66 25.60 0.25 -29.73 16 16 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 17 C 0.00 0.15 5.47 84.65 0.46 0.61 16 18 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 19 Si 0.95 43.87 27.47 68.60 1.88 45.75 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 23 C -0.17 -4.80 8.52 22.49 0.19 -4.61 16 24 H 0.07 0.66 7.67 -2.39 -0.02 0.64 16 25 H 0.06 0.68 7.65 -2.39 -0.02 0.66 16 26 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.15 1.77 6.29 -2.91 -0.02 1.75 16 28 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.43 5.99 8.92 -92.71 -0.83 5.17 16 31 H 0.34 10.53 7.15 -92.71 -0.66 9.87 16 32 H 0.40 8.06 8.58 -92.71 -0.80 7.27 16 33 H 0.06 1.70 7.97 -2.39 -0.02 1.68 16 34 H 0.06 1.73 7.97 -2.39 -0.02 1.71 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 38 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.12 4.04 6.28 -2.91 -0.02 4.02 16 Total: -1.00 -72.42 332.88 2.28 -70.14 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -1.27 Total: 26.45 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 5.97 Total: -12.26 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -3.34 Total: -120.91 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.97 Total: -9.17 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -72.42 2.28 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849003239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.882 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds