Wall clock time and date at job start Mon Mar 30 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00130 * 2 1 4 4 H 1.48495 * 109.46931 * 274.61396 * 3 2 1 5 5 H 1.48497 * 109.47154 * 34.61540 * 3 2 1 6 6 H 1.48505 * 109.47079 * 154.61176 * 3 2 1 7 7 C 1.37881 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99975 * 5.30929 * 7 2 1 9 9 C 1.50700 * 119.99801 * 185.30819 * 7 2 1 10 10 H 1.09001 * 109.52184 * 325.70658 * 9 7 2 11 11 C 1.53041 * 109.49792 * 205.62886 * 9 7 2 12 12 C 1.53042 * 109.54044 * 178.68558 * 11 9 7 13 13 C 1.52754 * 109.38594 * 61.23426 * 12 11 9 14 14 N 1.46934 * 109.01119 * 305.59121 * 13 12 11 15 15 C 1.34772 * 120.62945 * 233.58540 * 14 13 12 16 16 O 1.21619 * 119.99474 * 185.90958 * 15 14 13 17 17 C 1.47095 * 120.00430 * 5.90565 * 15 14 13 18 18 C 1.32992 * 120.00537 * 202.21763 * 17 15 14 19 19 C 1.51265 * 120.85421 * 186.97513 * 18 17 15 20 20 C 1.53225 * 108.69858 * 231.22839 * 19 18 17 21 21 C 1.53006 * 109.37645 * 305.66045 * 20 19 18 22 22 C 1.52960 * 109.98691 * 63.31430 * 21 20 19 23 23 C 1.51273 * 120.84383 * 6.95113 * 18 17 15 24 24 C 1.46925 * 118.73608 * 53.30669 * 14 13 12 25 25 H 0.97003 * 119.99458 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.45850 * 298.69956 * 11 9 7 27 27 H 1.09001 * 109.45951 * 58.67322 * 11 9 7 28 28 H 1.08998 * 109.49837 * 181.31736 * 12 11 9 29 29 H 1.08999 * 109.49006 * 301.37564 * 12 11 9 30 30 H 1.08999 * 109.51540 * 185.70770 * 13 12 11 31 31 H 1.09003 * 109.43196 * 65.42014 * 13 12 11 32 32 H 1.08006 * 119.99987 * 22.21604 * 17 15 14 33 33 H 1.09000 * 109.62574 * 351.04347 * 19 18 17 34 34 H 1.09003 * 109.62525 * 111.41702 * 19 18 17 35 35 H 1.09000 * 109.48260 * 65.44395 * 20 19 18 36 36 H 1.08995 * 109.48709 * 185.49288 * 20 19 18 37 37 H 1.08996 * 109.26761 * 303.19280 * 21 20 19 38 38 H 1.09003 * 109.33820 * 183.47432 * 21 20 19 39 39 H 1.08997 * 109.48515 * 176.49808 * 22 21 20 40 40 H 1.09003 * 109.49066 * 56.46299 * 22 21 20 41 41 H 1.09001 * 109.62319 * 248.39163 * 23 18 17 42 42 H 1.08997 * 109.63039 * 8.76540 * 23 18 17 43 43 H 1.09001 * 109.58640 * 66.43260 * 24 14 13 44 44 H 1.08993 * 109.58706 * 186.71477 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3991 2.1027 -1.3955 5 1 1.4988 2.6225 0.7953 6 1 3.5921 1.4139 0.6003 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 -0.0856 9 6 3.5066 -1.1969 0.1213 10 1 3.9145 -0.3232 -0.3870 11 6 4.0682 -2.4686 -0.5187 12 6 5.5957 -2.4568 -0.4258 13 6 6.0141 -2.4290 1.0431 14 7 5.3602 -1.2921 1.7056 15 6 6.0858 -0.3867 2.3912 16 8 5.5258 0.4879 3.0240 17 6 7.5550 -0.4564 2.3741 18 6 8.2591 0.1097 3.3501 19 6 9.7678 0.1871 3.2739 20 6 10.3545 -0.3648 4.5773 21 6 9.7403 0.3786 5.7653 22 6 8.2338 0.1199 5.8218 23 6 7.5714 0.6931 4.5646 24 6 3.9008 -1.1578 1.6011 25 1 -0.4849 0.8401 0.0004 26 1 3.6792 -3.3414 0.0059 27 1 3.7685 -2.5109 -1.5659 28 1 5.9961 -3.3515 -0.9025 29 1 5.9839 -1.5716 -0.9295 30 1 7.0964 -2.3184 1.1114 31 1 5.7085 -3.3577 1.5249 32 1 8.0621 -0.9674 1.5689 33 1 10.1229 -0.4072 2.4320 34 1 10.0751 1.2249 3.1447 35 1 10.1244 -1.4272 4.6584 36 1 11.4355 -0.2257 4.5771 37 1 9.9204 1.4477 5.6526 38 1 10.2028 0.0287 6.6883 39 1 7.8151 0.6016 6.7053 40 1 8.0508 -0.9535 5.8718 41 1 7.6754 1.7781 4.5583 42 1 6.5145 0.4267 4.5503 43 1 3.4194 -1.9808 2.1293 44 1 3.5888 -0.2100 2.0396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:38 Heat of formation + Delta-G solvation = -42.859448 kcal Electronic energy + Delta-G solvation = -22279.791211 eV Core-core repulsion = 19196.147439 eV Total energy + Delta-G solvation = -3083.643772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93646 -38.28970 -36.77485 -33.42618 -32.63912 -31.85234 -31.09617 -30.47066 -27.21006 -25.17054 -24.46026 -23.03172 -21.86943 -21.49679 -19.98676 -18.80223 -17.90262 -16.97624 -16.65868 -15.69116 -15.24072 -14.58479 -14.39033 -14.23548 -14.02635 -13.84027 -13.57871 -13.44725 -13.00087 -12.67415 -12.60261 -12.48058 -12.33116 -12.09742 -11.86718 -11.24798 -11.18246 -11.05229 -11.01018 -10.65977 -10.59604 -10.51259 -10.38709 -10.06370 -9.65094 -9.45387 -9.19630 -9.01338 -8.89185 -8.54648 -7.93341 -6.10006 -4.10613 1.57614 3.32755 3.43724 3.53069 3.54617 3.59923 4.45057 4.54561 4.58443 4.75537 4.85567 5.02388 5.13686 5.18793 5.23820 5.28981 5.38867 5.40693 5.46018 5.50929 5.57082 5.71356 5.80959 5.87190 5.87941 5.91979 5.96005 6.04181 6.17257 6.18556 6.26487 6.33866 6.45425 6.56111 6.65016 6.67851 6.72554 6.87607 7.01364 7.27569 7.41036 7.75214 8.00719 8.48992 8.69634 8.95244 9.53645 11.02374 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.004783 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.490061 B = 5852.176041 C = 6514.185104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.076 3.924 3 Si 0.868 3.132 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.005 3.995 10 H 0.033 0.967 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.110 3.890 14 N -0.604 5.604 15 C 0.540 3.460 16 O -0.545 6.545 17 C -0.220 4.220 18 C -0.038 4.038 19 C -0.090 4.090 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.113 4.113 24 C 0.113 3.887 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.060 0.940 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.331 -2.854 6.834 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.127 4.127 3 Si 0.695 3.305 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.014 4.014 10 H 0.051 0.949 11 C -0.141 4.141 12 C -0.177 4.177 13 C -0.013 4.013 14 N -0.336 5.336 15 C 0.330 3.670 16 O -0.426 6.426 17 C -0.241 4.241 18 C -0.040 4.040 19 C -0.127 4.127 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.149 4.149 24 C -0.008 4.008 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.838 -2.303 7.161 22.154 hybrid contribution 0.376 0.831 -0.226 0.939 sum 21.214 -1.473 6.936 22.367 Atomic orbital electron populations 1.69912 1.06370 1.27099 1.49907 1.25047 0.94658 0.99062 0.93905 0.86977 0.81468 0.83828 0.78254 1.20548 1.21308 1.17771 1.20918 0.88774 0.94644 1.50972 0.90691 1.19479 0.96896 0.94284 0.90771 0.94893 1.21522 0.91846 0.99617 1.01095 1.21944 0.99019 1.01402 0.95333 1.21615 0.96961 0.89182 0.93545 1.48417 1.09329 1.25015 1.50829 1.18535 0.87492 0.81635 0.79312 1.90655 1.73055 1.36399 1.42521 1.22492 0.93641 1.06253 1.01683 1.22551 0.95049 0.92079 0.94341 1.20899 0.91396 1.02091 0.98332 1.21563 0.99480 1.00187 0.94088 1.21559 0.95988 1.00565 0.97858 1.21596 0.94850 1.01139 0.97868 1.21380 1.02607 1.00194 0.90768 1.22466 0.75528 1.02283 1.00563 0.92576 0.92741 0.92242 0.91757 0.92163 0.90618 0.91733 0.85588 0.91005 0.90142 0.91791 0.91690 0.91945 0.92128 0.91693 0.92114 0.90707 0.87035 0.92197 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 22.39 26.47 -169.99 -4.50 17.89 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.25 -6.58 5.84 56.52 0.33 -6.25 16 7 C -0.52 -14.25 8.87 -34.44 -0.31 -14.56 16 8 H 0.07 2.23 8.05 -52.49 -0.42 1.80 16 9 C 0.01 0.13 1.77 -91.65 -0.16 -0.04 16 10 H 0.03 0.81 5.67 -51.93 -0.29 0.51 16 11 C -0.10 -1.95 5.15 -26.69 -0.14 -2.09 16 12 C -0.14 -2.07 6.06 -26.84 -0.16 -2.23 16 13 C 0.11 1.59 6.32 -3.93 -0.02 1.56 16 14 N -0.60 -11.31 2.98 -174.43 -0.52 -11.83 16 15 C 0.54 10.17 7.24 -12.67 -0.09 10.07 16 16 O -0.55 -12.10 13.10 5.26 0.07 -12.04 16 17 C -0.22 -3.15 8.67 -37.81 -0.33 -3.48 16 18 C -0.04 -0.49 5.40 -100.61 -0.54 -1.03 16 19 C -0.09 -0.84 6.03 -27.49 -0.17 -1.00 16 20 C -0.12 -0.94 5.96 -26.61 -0.16 -1.10 16 21 C -0.12 -1.05 5.80 -26.75 -0.16 -1.21 16 22 C -0.12 -1.24 5.94 -26.63 -0.16 -1.40 16 23 C -0.11 -1.53 5.32 -27.48 -0.15 -1.68 16 24 C 0.11 2.51 5.41 -3.71 -0.02 2.49 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.88 5.49 -51.93 -0.29 0.59 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.13 1.48 6.29 -52.48 -0.33 1.15 16 33 H 0.07 0.58 7.91 -51.93 -0.41 0.17 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.11 1.89 4.95 -51.93 -0.26 1.63 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.08 2.04 5.67 -51.93 -0.29 1.74 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -31.96 332.31 -9.25 -41.21 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.42 Total: 0.02 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.66 Total: -13.58 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.25 Total: -38.52 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.04 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.50 Total: 17.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.96 -9.25 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.652 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds