Wall clock time and date at job start Mon Mar 30 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00130 * 2 1 4 4 H 1.48495 * 109.46931 * 274.61396 * 3 2 1 5 5 H 1.48497 * 109.47154 * 34.61540 * 3 2 1 6 6 H 1.48505 * 109.47079 * 154.61176 * 3 2 1 7 7 C 1.37881 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99975 * 5.30929 * 7 2 1 9 9 C 1.50700 * 119.99801 * 185.30819 * 7 2 1 10 10 H 1.09001 * 109.52184 * 325.70658 * 9 7 2 11 11 C 1.53041 * 109.49792 * 205.62886 * 9 7 2 12 12 C 1.53042 * 109.54044 * 178.68558 * 11 9 7 13 13 C 1.52754 * 109.38594 * 61.23426 * 12 11 9 14 14 N 1.46934 * 109.01119 * 305.59121 * 13 12 11 15 15 C 1.34772 * 120.62945 * 233.58540 * 14 13 12 16 16 O 1.21619 * 119.99474 * 185.90958 * 15 14 13 17 17 C 1.47095 * 120.00430 * 5.90565 * 15 14 13 18 18 C 1.32992 * 120.00537 * 202.21763 * 17 15 14 19 19 C 1.51265 * 120.85421 * 186.97513 * 18 17 15 20 20 C 1.53225 * 108.69858 * 231.22839 * 19 18 17 21 21 C 1.53006 * 109.37645 * 305.66045 * 20 19 18 22 22 C 1.52960 * 109.98691 * 63.31430 * 21 20 19 23 23 C 1.51273 * 120.84383 * 6.95113 * 18 17 15 24 24 C 1.46925 * 118.73608 * 53.30669 * 14 13 12 25 25 H 0.97003 * 119.99458 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.45850 * 298.69956 * 11 9 7 27 27 H 1.09001 * 109.45951 * 58.67322 * 11 9 7 28 28 H 1.08998 * 109.49837 * 181.31736 * 12 11 9 29 29 H 1.08999 * 109.49006 * 301.37564 * 12 11 9 30 30 H 1.08999 * 109.51540 * 185.70770 * 13 12 11 31 31 H 1.09003 * 109.43196 * 65.42014 * 13 12 11 32 32 H 1.08006 * 119.99987 * 22.21604 * 17 15 14 33 33 H 1.09000 * 109.62574 * 351.04347 * 19 18 17 34 34 H 1.09003 * 109.62525 * 111.41702 * 19 18 17 35 35 H 1.09000 * 109.48260 * 65.44395 * 20 19 18 36 36 H 1.08995 * 109.48709 * 185.49288 * 20 19 18 37 37 H 1.08996 * 109.26761 * 303.19280 * 21 20 19 38 38 H 1.09003 * 109.33820 * 183.47432 * 21 20 19 39 39 H 1.08997 * 109.48515 * 176.49808 * 22 21 20 40 40 H 1.09003 * 109.49066 * 56.46299 * 22 21 20 41 41 H 1.09001 * 109.62319 * 248.39163 * 23 18 17 42 42 H 1.08997 * 109.63039 * 8.76540 * 23 18 17 43 43 H 1.09001 * 109.58640 * 66.43260 * 24 14 13 44 44 H 1.08993 * 109.58706 * 186.71477 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3991 2.1027 -1.3955 5 1 1.4988 2.6225 0.7953 6 1 3.5921 1.4139 0.6003 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 -0.0856 9 6 3.5066 -1.1969 0.1213 10 1 3.9145 -0.3232 -0.3870 11 6 4.0682 -2.4686 -0.5187 12 6 5.5957 -2.4568 -0.4258 13 6 6.0141 -2.4290 1.0431 14 7 5.3602 -1.2921 1.7056 15 6 6.0858 -0.3867 2.3912 16 8 5.5258 0.4879 3.0240 17 6 7.5550 -0.4564 2.3741 18 6 8.2591 0.1097 3.3501 19 6 9.7678 0.1871 3.2739 20 6 10.3545 -0.3648 4.5773 21 6 9.7403 0.3786 5.7653 22 6 8.2338 0.1199 5.8218 23 6 7.5714 0.6931 4.5646 24 6 3.9008 -1.1578 1.6011 25 1 -0.4849 0.8401 0.0004 26 1 3.6792 -3.3414 0.0059 27 1 3.7685 -2.5109 -1.5659 28 1 5.9961 -3.3515 -0.9025 29 1 5.9839 -1.5716 -0.9295 30 1 7.0964 -2.3184 1.1114 31 1 5.7085 -3.3577 1.5249 32 1 8.0621 -0.9674 1.5689 33 1 10.1229 -0.4072 2.4320 34 1 10.0751 1.2249 3.1447 35 1 10.1244 -1.4272 4.6584 36 1 11.4355 -0.2257 4.5771 37 1 9.9204 1.4477 5.6526 38 1 10.2028 0.0287 6.6883 39 1 7.8151 0.6016 6.7053 40 1 8.0508 -0.9535 5.8718 41 1 7.6754 1.7781 4.5583 42 1 6.5145 0.4267 4.5503 43 1 3.4194 -1.9808 2.1293 44 1 3.5888 -0.2100 2.0396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:37 Heat of formation + Delta-G solvation = -61.718226 kcal Electronic energy + Delta-G solvation = -22280.608989 eV Core-core repulsion = 19196.147439 eV Total energy + Delta-G solvation = -3084.461550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30395 -39.35812 -38.16971 -35.29871 -33.84873 -33.39252 -32.15842 -31.88165 -28.39137 -26.96211 -25.87572 -23.85480 -23.39910 -22.56178 -21.25786 -20.20418 -19.25054 -18.77576 -18.16140 -16.82536 -16.70772 -16.21428 -15.59961 -15.37446 -15.22518 -15.09669 -15.03958 -14.61742 -14.48312 -14.24025 -13.87739 -13.74977 -13.49501 -13.23997 -13.05822 -12.83105 -12.67941 -12.59283 -12.03837 -12.00236 -11.85068 -11.72203 -11.60902 -11.55866 -11.18949 -11.14974 -11.08653 -10.74669 -10.35710 -10.02682 -9.43480 -8.37981 -6.39858 0.46503 1.21958 1.29789 1.41900 2.17073 2.24152 2.26628 3.01199 3.58197 3.76027 3.91969 4.06214 4.07175 4.11904 4.16834 4.24778 4.32932 4.43896 4.49406 4.50925 4.60438 4.63912 4.73036 4.77412 4.81033 4.96020 4.97591 5.00997 5.05269 5.13266 5.15854 5.18386 5.19125 5.25563 5.34196 5.45235 5.46212 5.58184 5.59179 5.61147 5.69721 5.78067 6.27222 6.61675 6.69365 7.26917 7.27515 8.78424 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.004783 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.490061 B = 5852.176041 C = 6514.185104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.025 3.975 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.512 4.512 8 H 0.044 0.956 9 C 0.005 3.995 10 H 0.022 0.978 11 C -0.102 4.102 12 C -0.129 4.129 13 C 0.105 3.895 14 N -0.610 5.610 15 C 0.528 3.472 16 O -0.593 6.593 17 C -0.236 4.236 18 C -0.022 4.022 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.120 4.120 24 C 0.124 3.876 25 H 0.266 0.734 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.026 -3.643 6.582 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.173 4.173 3 Si 0.753 3.247 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.062 0.938 9 C -0.014 4.014 10 H 0.040 0.960 11 C -0.139 4.139 12 C -0.167 4.167 13 C -0.017 4.017 14 N -0.341 5.341 15 C 0.321 3.679 16 O -0.477 6.477 17 C -0.256 4.256 18 C -0.024 4.024 19 C -0.124 4.124 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.157 4.157 24 C 0.001 3.999 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 25.569 -3.124 6.888 26.664 hybrid contribution -1.118 1.036 -0.050 1.525 sum 24.451 -2.088 6.838 25.475 Atomic orbital electron populations 1.70025 1.07819 1.27909 1.52316 1.25737 0.95224 1.02171 0.94206 0.86031 0.79693 0.80277 0.78652 1.18958 1.21692 1.18469 1.21259 0.91412 0.93188 1.49209 0.93761 1.19429 0.93947 0.96324 0.91728 0.96007 1.21446 0.95347 0.96930 1.00212 1.21897 0.95238 1.03468 0.96079 1.21978 0.98945 0.87970 0.92757 1.48444 1.07608 1.26523 1.51481 1.19407 0.89557 0.80683 0.78244 1.90646 1.74395 1.38254 1.44427 1.22451 0.90415 1.08969 1.03812 1.22936 0.97295 0.89398 0.92771 1.21012 0.88111 1.03294 0.99997 1.21584 1.00744 0.99950 0.92750 1.21564 0.93957 1.01049 0.99220 1.21567 0.96617 1.00617 0.96264 1.21324 1.00905 1.00185 0.93253 1.21877 0.78728 1.00050 0.99247 0.92464 0.92691 0.92638 0.87501 0.92241 0.86644 0.90395 0.82127 0.88784 0.89150 0.91679 0.89265 0.91662 0.90538 0.91669 0.92437 0.91166 0.90988 0.92820 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.96 13.96 21.45 0.30 -59.66 16 2 C 0.02 1.50 5.47 84.66 0.46 1.96 16 3 Si 0.93 48.15 26.47 68.60 1.82 49.97 16 4 H -0.26 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.26 -13.69 5.84 99.48 0.58 -13.11 16 7 C -0.51 -29.45 8.87 25.60 0.23 -29.22 16 8 H 0.04 2.75 8.05 -2.91 -0.02 2.73 16 9 C 0.01 0.26 1.77 -11.46 -0.02 0.24 16 10 H 0.02 1.07 5.67 -2.39 -0.01 1.06 16 11 C -0.10 -3.73 5.15 30.62 0.16 -3.58 16 12 C -0.13 -3.37 6.06 30.53 0.19 -3.18 16 13 C 0.10 2.65 6.32 86.21 0.55 3.20 16 14 N -0.61 -22.35 2.98 -824.02 -2.45 -24.81 16 15 C 0.53 19.74 7.24 86.57 0.63 20.37 16 16 O -0.59 -27.43 13.10 -4.09 -0.05 -27.48 16 17 C -0.24 -6.14 8.67 23.43 0.20 -5.93 16 18 C -0.02 -0.51 5.40 -17.25 -0.09 -0.60 16 19 C -0.09 -1.23 6.03 30.10 0.18 -1.05 16 20 C -0.11 -1.32 5.96 30.67 0.18 -1.14 16 21 C -0.12 -1.68 5.80 30.58 0.18 -1.50 16 22 C -0.11 -2.26 5.94 30.66 0.18 -2.07 16 23 C -0.12 -3.21 5.32 30.11 0.16 -3.05 16 24 C 0.12 5.68 5.41 86.36 0.47 6.15 16 25 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.12 2.06 5.49 -2.39 -0.01 2.05 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 32 H 0.16 2.96 6.29 -2.91 -0.02 2.94 16 33 H 0.09 0.98 7.91 -2.39 -0.02 0.97 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.56 4.95 -2.40 -0.01 2.55 16 43 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.04 2.29 5.67 -2.39 -0.01 2.28 16 Total: -1.00 -75.10 332.31 4.09 -71.01 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.84 Total: 10.39 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 3.65 Total: -19.42 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.15 Total: -84.47 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.05 Total: -27.48 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.82 Total: 49.97 kcal Total: -75.10 4.09 -71.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.287 kcal (2) G-P(sol) polarization free energy of solvation -75.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds