Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00244 * 2 1 4 4 H 1.48498 * 109.47036 * 239.99682 * 3 2 1 5 5 H 1.48499 * 109.46748 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47099 * 119.99239 * 3 2 1 7 7 C 1.37881 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99656 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00065 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.81657 * 61.88020 * 9 7 2 11 11 C 1.54885 * 110.75479 * 298.53789 * 9 7 2 12 12 C 1.54265 * 104.19601 * 203.74127 * 11 9 7 13 13 C 1.53877 * 106.59923 * 23.61425 * 12 11 9 14 14 H 1.08995 * 110.03564 * 240.66555 * 13 12 11 15 15 N 1.46505 * 110.03136 * 119.28008 * 13 12 11 16 16 C 1.34775 * 119.99704 * 86.46072 * 15 13 12 17 17 O 1.21278 * 119.99974 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99627 * 180.02562 * 16 15 13 19 19 C 1.52310 * 115.90838 * 248.60366 * 18 16 15 20 20 C 1.52301 * 115.97309 * 180.36020 * 18 16 15 21 21 H 1.09000 * 117.29799 * 359.36048 * 20 18 16 22 22 C 1.52704 * 120.50509 * 210.68373 * 20 18 16 23 23 C 1.52877 * 110.15434 * 21.53424 * 22 20 18 24 24 C 1.53301 * 108.58128 * 305.47965 * 23 22 20 25 25 C 1.51613 * 108.27964 * 74.51272 * 24 23 22 26 26 C 1.54265 * 106.59543 * 359.97438 * 13 12 11 27 27 H 0.97001 * 120.00146 * 0.02562 * 1 2 3 28 28 H 1.09006 * 110.48607 * 85.06883 * 11 9 7 29 29 H 1.08995 * 110.49091 * 322.42501 * 11 9 7 30 30 H 1.08994 * 110.03938 * 264.32770 * 12 11 9 31 31 H 1.09004 * 110.02766 * 142.89725 * 12 11 9 32 32 H 0.96999 * 119.99538 * 266.45077 * 15 13 12 33 33 H 1.09002 * 117.54011 * 0.84966 * 19 18 16 34 34 H 1.09002 * 117.53684 * 146.02821 * 19 18 16 35 35 H 1.08996 * 109.36087 * 141.74487 * 22 20 18 36 36 H 1.09005 * 109.35656 * 261.32451 * 22 20 18 37 37 H 1.08996 * 109.62147 * 65.20508 * 23 22 20 38 38 H 1.08996 * 109.62130 * 185.75555 * 23 22 20 39 39 H 1.08998 * 109.62139 * 194.17743 * 24 23 22 40 40 H 1.09000 * 109.61797 * 314.70962 * 24 23 22 41 41 H 1.08997 * 108.19767 * 184.59375 * 25 24 23 42 42 H 1.09006 * 109.67826 * 65.52143 * 25 24 23 43 43 H 1.08997 * 110.48693 * 95.06898 * 26 13 12 44 44 H 1.09004 * 110.48661 * 217.71016 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6417 -2.5947 -0.8983 11 6 0.3767 -2.6282 1.2726 12 6 0.1820 -4.1488 1.4451 13 6 1.3575 -4.8276 0.7204 14 1 0.9840 -5.4665 -0.0798 15 7 2.1422 -5.6203 1.6702 16 6 1.7880 -6.8922 1.9407 17 8 0.8194 -7.3804 1.3981 18 6 2.5949 -7.7074 2.9181 19 6 3.3868 -8.8653 2.3248 20 6 2.1183 -9.1354 3.1489 21 1 1.2311 -9.4603 2.6054 22 6 2.3292 -9.8140 4.5005 23 6 2.5291 -8.7628 5.5923 24 6 3.6766 -7.8363 5.1741 25 6 3.1701 -6.9150 4.0817 26 6 2.2252 -3.6958 0.1323 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5842 -2.1347 1.1268 29 1 0.8946 -2.2096 2.1355 30 1 -0.7619 -4.4577 0.9961 31 1 0.1953 -4.4091 2.5035 32 1 2.9168 -5.2297 2.1043 33 1 3.3288 -9.0154 1.2467 34 1 4.3461 -9.1067 2.7827 35 1 1.4566 -10.4218 4.7397 36 1 3.2099 -10.4543 4.4499 37 1 1.6149 -8.1816 5.7126 38 1 2.7797 -9.2543 6.5323 39 1 4.0017 -7.2465 6.0311 40 1 4.5094 -8.4314 4.7993 41 1 4.0075 -6.3135 3.7282 42 1 2.3999 -6.2570 4.4844 43 1 3.0417 -3.4492 0.8108 44 1 2.6135 -3.9815 -0.8454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868656446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = -46.837803 kcal Electronic energy + Delta-G solvation = -21975.659096 eV Core-core repulsion = 18891.842809 eV Total energy + Delta-G solvation = -3083.816287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71384 -38.51746 -36.84396 -33.72367 -33.22923 -32.07416 -30.92283 -28.16504 -27.18715 -25.02369 -24.18513 -23.31304 -21.55148 -20.65502 -19.67090 -19.13300 -18.34640 -17.35870 -16.54910 -15.61854 -15.03442 -14.79051 -14.56853 -14.46939 -14.19003 -14.05578 -13.71628 -13.45217 -12.81256 -12.53193 -12.30029 -12.23065 -12.06164 -11.77821 -11.22013 -11.14766 -11.04506 -10.96596 -10.90839 -10.70926 -10.60882 -10.28958 -10.09819 -9.95404 -9.80551 -9.51620 -9.43403 -9.18100 -8.81695 -8.56923 -8.36612 -6.00697 -4.04508 2.70770 3.31120 3.36438 3.37797 3.42921 3.69674 4.41512 4.43399 4.47056 4.59728 4.74600 4.86250 5.03499 5.08054 5.26828 5.31230 5.33700 5.42130 5.54932 5.58726 5.66220 5.67560 5.71018 5.84413 5.89835 5.91477 5.94059 6.02957 6.10612 6.21632 6.33735 6.37496 6.61253 6.67598 6.75819 6.91648 6.95214 7.27541 7.34203 7.71999 7.85312 7.89270 8.02791 8.42411 8.52499 8.97273 9.59610 11.08344 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031959 B = 0.003606 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.899480 B = 7762.152864 C = 8059.974096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.134 4.134 13 C 0.138 3.862 14 H 0.078 0.922 15 N -0.712 5.712 16 C 0.541 3.459 17 O -0.547 6.547 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.117 4.117 21 H 0.115 0.885 22 C -0.089 4.089 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.084 4.084 26 C -0.121 4.121 27 H 0.260 0.740 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.397 0.603 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.226 -16.677 9.863 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.173 4.173 13 C 0.034 3.966 14 H 0.096 0.904 15 N -0.362 5.362 16 C 0.327 3.673 17 O -0.425 6.425 18 C -0.146 4.146 19 C -0.192 4.192 20 C -0.136 4.136 21 H 0.133 0.867 22 C -0.126 4.126 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.122 4.122 26 C -0.159 4.159 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.232 0.768 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.359 -16.881 9.449 20.364 hybrid contribution 0.781 1.232 0.169 1.468 sum 7.140 -15.650 9.618 19.708 Atomic orbital electron populations 1.69948 1.05876 1.26561 1.50245 1.24975 0.94832 0.98994 0.95062 0.86699 0.79617 0.83342 0.78547 1.20324 1.21353 1.20338 1.21054 0.92705 0.90448 1.51193 0.92708 1.19539 0.91986 0.91004 0.94141 0.95025 1.22304 1.01649 0.90313 0.99522 1.22648 0.97014 0.98846 0.98773 1.21877 0.92226 0.91993 0.90506 0.90378 1.46289 1.31894 1.12548 1.45459 1.19600 0.84176 0.81926 0.81630 1.90664 1.27988 1.71347 1.52483 1.21125 1.03933 0.90707 0.98788 1.23176 0.96019 0.99879 1.00144 1.22283 0.98700 0.94808 0.97799 0.86696 1.21085 1.01885 0.97219 0.92403 1.21604 0.99126 0.97466 0.97772 1.21379 0.98091 0.97976 0.98195 1.20606 1.00508 0.97524 0.93512 1.22753 0.98735 0.95459 0.98937 0.92998 0.91238 0.93519 0.92647 0.93270 0.76809 0.88514 0.87967 0.91390 0.91480 0.91499 0.91858 0.91331 0.91658 0.91194 0.90767 0.92103 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 12.02 55.43 0.67 -24.63 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.64 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.85 8.54 -34.44 -0.29 -14.14 16 8 H 0.05 1.44 7.78 -52.49 -0.41 1.03 16 9 C 0.05 1.27 2.82 -89.79 -0.25 1.02 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.31 5.57 -25.07 -0.14 -2.45 16 12 C -0.13 -2.68 6.59 -25.61 -0.17 -2.85 16 13 C 0.14 2.56 3.23 -66.81 -0.22 2.34 16 14 H 0.08 1.54 7.61 -51.93 -0.39 1.15 16 15 N -0.71 -11.14 4.89 -52.72 -0.26 -11.40 16 16 C 0.54 8.61 7.25 -10.99 -0.08 8.53 16 17 O -0.55 -10.73 15.75 5.56 0.09 -10.64 16 18 C -0.14 -1.69 2.50 -156.84 -0.39 -2.09 16 19 C -0.15 -1.60 9.28 -26.74 -0.25 -1.85 16 20 C -0.12 -1.30 5.67 -90.79 -0.51 -1.81 16 21 H 0.12 1.49 7.51 -51.93 -0.39 1.10 16 22 C -0.09 -0.75 5.83 -26.95 -0.16 -0.91 16 23 C -0.12 -0.99 5.92 -26.64 -0.16 -1.15 16 24 C -0.12 -0.95 5.69 -27.28 -0.16 -1.10 16 25 C -0.08 -0.83 4.64 -27.91 -0.13 -0.96 16 26 C -0.12 -2.40 5.94 -25.08 -0.15 -2.55 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.07 1.77 7.37 -51.93 -0.38 1.39 16 29 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 32 H 0.40 5.34 7.36 -40.82 -0.30 5.04 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.10 0.85 7.26 -51.93 -0.38 0.47 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.48 7.11 -51.93 -0.37 0.11 16 41 H 0.07 0.62 7.81 -51.93 -0.41 0.22 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.16 7.63 -51.93 -0.40 0.76 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -29.82 341.23 -10.14 -39.95 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.61 Total: 3.92 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -3.15 Total: -18.33 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.41 Total: -36.02 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.82 -10.14 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868656446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.885 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds