Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99758 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.48038 * 125.64894 * 359.69656 * 15 13 12 17 17 C 1.53689 * 103.47868 * 156.61654 * 16 15 13 18 18 H 1.09003 * 108.27029 * 285.75832 * 17 16 15 19 19 C 1.50037 * 114.88598 * 164.05738 * 17 16 15 20 20 C 1.49626 * 113.23708 * 281.56395 * 19 17 16 21 21 C 1.29199 * 123.38993 * 347.38692 * 20 19 17 22 22 C 1.49086 * 124.67994 * 1.95063 * 21 20 19 23 23 C 1.53163 * 112.89926 * 342.21144 * 22 21 20 24 24 H 1.09003 * 112.89116 * 273.78809 * 23 22 21 25 25 C 1.47285 * 125.64811 * 180.02562 * 15 13 12 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 1.09000 * 110.60177 * 275.22957 * 16 15 13 36 36 H 1.08997 * 110.60094 * 38.17592 * 16 15 13 37 37 H 1.08991 * 108.74784 * 160.58397 * 19 17 16 38 38 H 1.09000 * 108.71757 * 42.52060 * 19 17 16 39 39 H 1.08001 * 118.30433 * 167.41184 * 20 19 17 40 40 H 1.08000 * 117.65964 * 181.92463 * 21 20 19 41 41 H 1.09002 * 108.79504 * 221.33298 * 22 21 20 42 42 H 1.08996 * 108.80023 * 103.09193 * 22 21 20 43 43 H 1.08999 * 110.00994 * 296.83261 * 25 15 13 44 44 H 1.08996 * 110.00963 * 58.20124 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 6 1.7212 -7.4551 0.0036 14 8 0.5083 -7.4551 0.0036 15 7 2.3951 -8.6223 0.0036 16 6 3.8683 -8.7680 -0.0039 17 6 4.0930 -10.1665 0.5924 18 1 3.9089 -10.1141 1.6655 19 6 5.4622 -10.7368 0.3663 20 6 5.6506 -11.2918 -1.0104 21 6 4.6762 -11.4981 -1.8334 22 6 3.2470 -11.1795 -1.5528 23 6 2.9611 -10.9871 -0.0605 24 1 2.7451 -11.9235 0.4540 25 6 1.7878 -9.9641 0.0041 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5564 0.8919 29 1 2.8714 -3.6047 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 0.8541 -5.0447 0.8922 32 1 0.8534 -5.0451 -0.8877 33 1 3.1012 -6.0925 -0.8876 34 1 3.1013 -6.0919 0.8923 35 1 4.2537 -8.7163 -1.0222 36 1 4.3322 -8.0056 0.6219 37 1 5.6343 -11.5325 1.0910 38 1 6.1998 -9.9513 0.5310 39 1 6.6528 -11.5327 -1.3327 40 1 4.9141 -11.9320 -2.7933 41 1 2.6258 -11.9931 -1.9274 42 1 2.9806 -10.2648 -2.0822 43 1 1.2132 -10.1131 0.9183 44 1 1.1421 -10.0816 -0.8661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871522806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = -46.538499 kcal Electronic energy + Delta-G solvation = -21133.646315 eV Core-core repulsion = 18049.843007 eV Total energy + Delta-G solvation = -3083.803308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90619 -38.80494 -35.51953 -34.83533 -32.66040 -32.11625 -31.42449 -29.59356 -27.71202 -26.06417 -24.79695 -22.87768 -22.00942 -21.24435 -19.97287 -19.15503 -17.75318 -16.84928 -16.70198 -16.13244 -15.94189 -15.18955 -14.96814 -14.48067 -14.40061 -14.13813 -13.83495 -13.50088 -13.04145 -12.85950 -12.60321 -12.55160 -12.18529 -12.14895 -11.95489 -11.63117 -11.57317 -11.19624 -10.96118 -10.77462 -10.51320 -10.48959 -10.45664 -10.37114 -9.76750 -9.57880 -9.34589 -9.19199 -8.95472 -8.73366 -8.28254 -5.92975 -3.95455 1.93883 2.75322 2.88838 3.35508 3.41404 3.44693 3.94174 4.12486 4.20752 4.50705 4.71217 4.74133 4.81853 4.88621 4.93755 5.01414 5.08290 5.22451 5.33272 5.36023 5.39255 5.41765 5.42483 5.50174 5.55541 5.65272 5.70150 5.77419 5.87886 5.89520 6.15468 6.17754 6.30233 6.35777 6.58560 6.59060 6.87600 7.05146 7.23199 7.45049 7.76833 7.93203 8.08741 8.25917 8.50484 9.12346 9.68040 11.18410 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.002707 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.654056 B =10340.875582 C =10831.256069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.527 3.473 14 O -0.535 6.535 15 N -0.628 5.628 16 C 0.108 3.892 17 C -0.097 4.097 18 H 0.080 0.920 19 C -0.077 4.077 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.090 4.090 23 C -0.092 4.092 24 H 0.102 0.898 25 C 0.107 3.893 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.955 -27.010 -0.570 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.317 3.683 14 O -0.411 6.411 15 N -0.364 5.364 16 C -0.015 4.015 17 C -0.117 4.117 18 H 0.098 0.902 19 C -0.114 4.114 20 C -0.174 4.174 21 C -0.170 4.170 22 C -0.127 4.127 23 C -0.111 4.111 24 H 0.120 0.880 25 C -0.016 4.016 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.071 -26.785 -0.567 28.988 hybrid contribution 0.544 0.867 -0.107 1.029 sum 11.615 -25.917 -0.674 28.409 Atomic orbital electron populations 1.69975 1.06054 1.26491 1.50983 1.25044 0.94836 0.99222 0.95488 0.86612 0.79827 0.83613 0.78038 1.20717 1.21260 1.19917 1.21290 0.92980 0.91211 1.50337 0.92757 1.19097 0.94064 0.91257 0.97319 1.21645 0.99064 0.93978 1.00038 1.21464 0.97036 0.92706 1.02957 1.21772 1.00012 0.91719 1.03785 1.20830 0.87897 0.84423 0.75121 1.90712 1.14063 1.87053 1.49235 1.48777 1.07117 1.05524 1.74985 1.22233 0.80885 0.96982 1.01374 1.21309 0.95011 0.94407 1.00927 0.90189 1.19554 0.95890 1.00497 0.95491 1.21860 0.98771 1.00959 0.95817 1.21738 0.94778 1.00825 0.99638 1.20406 0.94531 1.02307 0.95434 1.22420 0.94444 0.97908 0.96311 0.87992 1.22360 0.95333 0.81728 1.02132 0.93052 0.96595 0.96578 0.93498 0.93495 0.91811 0.91810 0.89281 0.89282 0.91018 0.90098 0.90392 0.90458 0.87604 0.88061 0.90905 0.90411 0.91698 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.29 55.43 0.74 -27.12 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 11 C -0.10 -1.93 4.50 -26.74 -0.12 -2.06 16 12 C -0.13 -1.91 4.72 -27.89 -0.13 -2.04 16 13 C 0.53 8.05 7.85 -10.99 -0.09 7.96 16 14 O -0.53 -10.41 16.31 5.55 0.09 -10.32 16 15 N -0.63 -7.27 3.33 -169.63 -0.57 -7.83 16 16 C 0.11 0.91 5.68 -2.84 -0.02 0.89 16 17 C -0.10 -0.65 2.62 -91.06 -0.24 -0.89 16 18 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 19 C -0.08 -0.42 5.59 -29.87 -0.17 -0.59 16 20 C -0.16 -0.93 9.88 -36.05 -0.36 -1.29 16 21 C -0.15 -0.98 9.77 -36.30 -0.35 -1.34 16 22 C -0.09 -0.62 4.65 -28.57 -0.13 -0.75 16 23 C -0.09 -0.64 3.94 -88.37 -0.35 -0.99 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 C 0.11 1.06 5.97 -2.12 -0.01 1.05 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.27 8.10 -51.93 -0.42 0.84 16 32 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.11 7.88 -51.93 -0.41 0.70 16 35 H 0.07 0.59 7.63 -51.93 -0.40 0.20 16 36 H 0.08 0.62 7.55 -51.93 -0.39 0.23 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 39 H 0.11 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.10 0.59 8.06 -52.49 -0.42 0.16 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.65 7.02 -51.93 -0.36 0.28 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -33.97 349.32 -9.98 -43.95 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -7.84 Total: -4.96 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.65 Total: -16.07 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.17 Total: -34.95 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.97 -9.98 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871522806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.587 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds