Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99758 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.48038 * 125.64894 * 359.69656 * 15 13 12 17 17 C 1.53689 * 103.47868 * 156.61654 * 16 15 13 18 18 H 1.09003 * 108.27029 * 285.75832 * 17 16 15 19 19 C 1.50037 * 114.88598 * 164.05738 * 17 16 15 20 20 C 1.49626 * 113.23708 * 281.56395 * 19 17 16 21 21 C 1.29199 * 123.38993 * 347.38692 * 20 19 17 22 22 C 1.49086 * 124.67994 * 1.95063 * 21 20 19 23 23 C 1.53163 * 112.89926 * 342.21144 * 22 21 20 24 24 H 1.09003 * 112.89116 * 273.78809 * 23 22 21 25 25 C 1.47285 * 125.64811 * 180.02562 * 15 13 12 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 1.09000 * 110.60177 * 275.22957 * 16 15 13 36 36 H 1.08997 * 110.60094 * 38.17592 * 16 15 13 37 37 H 1.08991 * 108.74784 * 160.58397 * 19 17 16 38 38 H 1.09000 * 108.71757 * 42.52060 * 19 17 16 39 39 H 1.08001 * 118.30433 * 167.41184 * 20 19 17 40 40 H 1.08000 * 117.65964 * 181.92463 * 21 20 19 41 41 H 1.09002 * 108.79504 * 221.33298 * 22 21 20 42 42 H 1.08996 * 108.80023 * 103.09193 * 22 21 20 43 43 H 1.08999 * 110.00994 * 296.83261 * 25 15 13 44 44 H 1.08996 * 110.00963 * 58.20124 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 6 1.7212 -7.4551 0.0036 14 8 0.5083 -7.4551 0.0036 15 7 2.3951 -8.6223 0.0036 16 6 3.8683 -8.7680 -0.0039 17 6 4.0930 -10.1665 0.5924 18 1 3.9089 -10.1141 1.6655 19 6 5.4622 -10.7368 0.3663 20 6 5.6506 -11.2918 -1.0104 21 6 4.6762 -11.4981 -1.8334 22 6 3.2470 -11.1795 -1.5528 23 6 2.9611 -10.9871 -0.0605 24 1 2.7451 -11.9235 0.4540 25 6 1.7878 -9.9641 0.0041 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5564 0.8919 29 1 2.8714 -3.6047 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 0.8541 -5.0447 0.8922 32 1 0.8534 -5.0451 -0.8877 33 1 3.1012 -6.0925 -0.8876 34 1 3.1013 -6.0919 0.8923 35 1 4.2537 -8.7163 -1.0222 36 1 4.3322 -8.0056 0.6219 37 1 5.6343 -11.5325 1.0910 38 1 6.1998 -9.9513 0.5310 39 1 6.6528 -11.5327 -1.3327 40 1 4.9141 -11.9320 -2.7933 41 1 2.6258 -11.9931 -1.9274 42 1 2.9806 -10.2648 -2.0822 43 1 1.2132 -10.1131 0.9183 44 1 1.1421 -10.0816 -0.8661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871522806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = -65.804431 kcal Electronic energy + Delta-G solvation = -21134.481748 eV Core-core repulsion = 18049.843007 eV Total energy + Delta-G solvation = -3084.638741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68780 -39.84184 -36.69070 -36.21082 -34.63274 -32.78999 -32.27352 -31.19508 -28.46702 -27.58428 -25.91086 -24.09811 -23.09598 -21.99096 -21.67305 -20.20612 -18.51990 -18.32130 -17.73583 -17.42406 -16.92641 -16.54553 -16.12942 -16.04104 -15.27396 -14.92492 -14.65816 -14.52555 -14.37952 -13.84572 -13.76803 -13.60220 -13.45302 -13.25508 -13.12383 -12.81952 -12.71914 -12.70246 -12.34551 -12.16563 -12.15927 -11.80226 -11.39825 -11.36063 -11.29734 -11.16902 -10.99382 -10.79249 -10.55360 -9.83026 -9.66727 -8.18816 -6.31250 1.40301 1.42863 1.49314 1.53982 1.58448 1.93802 2.42010 3.13861 3.29429 3.51174 3.67420 3.75870 4.00784 4.09430 4.13201 4.29566 4.35452 4.38562 4.44309 4.53969 4.56552 4.64254 4.68486 4.71472 4.77619 4.79783 4.85207 4.96108 4.98383 5.11674 5.15924 5.17568 5.22341 5.30839 5.34529 5.37494 5.41471 5.55707 5.76978 5.85543 5.87348 6.14650 6.24856 6.43775 6.87187 7.12381 7.38449 8.93620 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.002707 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.654056 B =10340.875582 C =10831.256069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.094 4.094 11 C -0.095 4.095 12 C -0.121 4.121 13 C 0.522 3.478 14 O -0.591 6.591 15 N -0.621 5.621 16 C 0.101 3.899 17 C -0.091 4.091 18 H 0.084 0.916 19 C -0.076 4.076 20 C -0.152 4.152 21 C -0.166 4.166 22 C -0.088 4.088 23 C -0.080 4.080 24 H 0.120 0.880 25 C 0.100 3.900 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.015 1.015 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.442 -27.760 -0.205 31.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.161 4.161 13 C 0.312 3.688 14 O -0.472 6.472 15 N -0.355 5.355 16 C -0.021 4.021 17 C -0.110 4.110 18 H 0.103 0.897 19 C -0.113 4.113 20 C -0.170 4.170 21 C -0.184 4.184 22 C -0.125 4.125 23 C -0.099 4.099 24 H 0.138 0.862 25 C -0.022 4.022 26 H 0.072 0.928 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.618 -27.581 -0.204 31.216 hybrid contribution -0.568 1.036 -0.231 1.204 sum 14.050 -26.544 -0.434 30.036 Atomic orbital electron populations 1.70135 1.08125 1.27783 1.51894 1.26111 0.95785 1.03804 0.94753 0.85367 0.78690 0.77955 0.78541 1.19694 1.20928 1.18210 1.21756 0.93774 0.92172 1.50261 0.91493 1.19054 0.94675 0.93806 0.94297 1.21438 0.97808 0.92561 1.01362 1.21252 0.97453 0.93670 1.00991 1.21635 0.98877 0.89303 1.06266 1.20948 0.87271 0.85717 0.74848 1.90690 1.16352 1.87919 1.52220 1.48783 1.08816 1.05117 1.72792 1.22527 0.78539 0.98733 1.02258 1.21310 0.95715 0.93111 1.00909 0.89747 1.19589 0.94998 1.01232 0.95477 1.22056 0.99124 0.99961 0.95885 1.21763 0.94443 1.01915 1.00292 1.20347 0.95298 1.01675 0.95131 1.22438 0.93040 0.97684 0.96713 0.86212 1.22514 0.96603 0.81866 1.01251 0.92835 0.99785 0.99701 0.92061 0.91947 0.93847 0.93982 0.86833 0.86511 0.90529 0.88609 0.88992 0.89267 0.86463 0.87664 0.90393 0.92252 0.92379 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.81 13.29 21.45 0.28 -59.52 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.09 -3.95 5.15 30.59 0.16 -3.80 16 11 C -0.10 -3.63 4.50 30.59 0.14 -3.49 16 12 C -0.12 -3.30 4.72 29.84 0.14 -3.16 16 13 C 0.52 15.90 7.85 87.66 0.69 16.59 16 14 O -0.59 -24.06 16.31 -3.05 -0.05 -24.11 16 15 N -0.62 -13.83 3.33 -808.98 -2.70 -16.53 16 16 C 0.10 1.44 5.68 86.32 0.49 1.93 16 17 C -0.09 -0.96 2.62 -11.08 -0.03 -0.99 16 18 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 19 C -0.08 -0.55 5.59 28.56 0.16 -0.39 16 20 C -0.15 -1.36 9.88 27.13 0.27 -1.09 16 21 C -0.17 -1.81 9.77 26.97 0.26 -1.54 16 22 C -0.09 -1.09 4.65 29.40 0.14 -0.95 16 23 C -0.08 -0.97 3.94 -9.33 -0.04 -1.00 16 24 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 25 C 0.10 1.95 5.97 87.20 0.52 2.48 16 26 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 32 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 33 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.12 2.56 7.88 -2.39 -0.02 2.54 16 35 H 0.08 1.07 7.63 -2.39 -0.02 1.05 16 36 H 0.10 1.12 7.55 -2.39 -0.02 1.10 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 0.50 8.10 -2.39 -0.02 0.48 16 39 H 0.12 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.11 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.96 7.02 -2.39 -0.02 0.94 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.26 7.68 -2.39 -0.02 1.24 16 Total: -1.00 -76.34 349.32 4.24 -72.09 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.94 Total: 6.68 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 3.74 Total: -25.78 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -2.41 Total: -76.06 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.34 4.24 -72.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871522806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.290 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds