Wall clock time and date at job start Mon Mar 30 2020 02:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47571 * 2 1 4 4 N 1.46499 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.35311 * 125.86903 * 124.71754 * 4 3 2 6 6 C 1.35349 * 106.17339 * 179.90299 * 5 4 3 7 7 C 1.50702 * 126.75137 * 180.12372 * 6 5 4 8 8 N 1.46900 * 109.47139 * 95.24331 * 7 6 5 9 9 C 1.46894 * 111.00200 * 190.00141 * 8 7 6 10 10 C 1.50703 * 109.47518 * 168.98609 * 9 8 7 11 11 H 1.08002 * 119.99394 * 354.96168 * 10 9 8 12 12 C 1.37874 * 120.00083 * 174.96806 * 10 9 8 13 13 N 1.31511 * 120.00217 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99911 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47197 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47190 * 119.99250 * 14 12 10 17 17 H 1.48499 * 109.47139 * 239.99496 * 14 12 10 18 18 C 1.46900 * 111.00057 * 66.04475 * 8 7 6 19 19 C 1.53006 * 109.46670 * 61.92711 * 18 8 7 20 20 C 1.47204 * 109.47037 * 179.58607 * 19 18 8 21 21 N 8.96092 * 155.50360 * 61.07744 * 2 1 3 22 22 N 1.33774 * 106.49835 * 0.34994 * 6 5 4 23 23 N 1.28631 * 108.88374 * 359.77257 * 22 6 5 24 24 H 1.08995 * 109.46984 * 59.99992 * 1 2 3 25 25 H 1.08999 * 109.47265 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46520 * 299.99939 * 1 2 3 27 27 H 1.09004 * 109.47148 * 119.99920 * 2 1 3 28 28 H 1.09006 * 109.47079 * 239.99690 * 2 1 3 29 29 H 1.09004 * 109.46819 * 300.00121 * 3 2 1 30 30 H 1.08995 * 109.46707 * 59.99860 * 3 2 1 31 31 H 1.07998 * 126.91179 * 0.02562 * 5 4 3 32 32 H 1.08999 * 109.47125 * 215.24576 * 7 6 5 33 33 H 1.09006 * 109.47011 * 335.24615 * 7 6 5 34 34 H 1.09000 * 109.47177 * 288.98758 * 9 8 7 35 35 H 1.09005 * 109.47109 * 48.98445 * 9 8 7 36 36 H 0.96999 * 120.00424 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47351 * 181.92619 * 18 8 7 38 38 H 1.08999 * 109.47379 * 301.93301 * 18 8 7 39 39 H 1.08997 * 109.47251 * 299.58785 * 19 18 8 40 40 H 1.08998 * 109.46856 * 59.59574 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2976 2.0670 -0.9022 6 6 5.5721 1.8089 -0.5265 7 6 6.8277 2.2861 -1.2096 8 7 7.3032 3.5139 -0.5581 9 6 8.3814 4.1389 -1.3357 10 6 8.6572 5.5179 -0.7940 11 1 8.0354 5.9244 -0.0100 12 6 9.7032 6.2606 -1.2992 13 7 10.4605 5.7655 -2.2536 14 14 10.0454 7.9696 -0.6272 15 1 9.0574 8.2914 0.4337 16 1 11.4159 8.0120 -0.0570 17 1 9.9347 8.9642 -1.7243 18 6 7.7356 3.2451 0.8199 19 6 8.9065 2.2604 0.8039 20 6 9.3463 1.9986 2.1841 21 7 9.6843 1.7969 3.2521 22 7 5.4979 1.0426 0.5675 23 7 4.2596 0.8436 0.8532 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8899 31 1 3.9776 2.6549 -1.7496 32 1 7.5956 1.5159 -1.1379 33 1 6.6151 2.4907 -2.2590 34 1 9.2833 3.5316 -1.2597 35 1 8.0800 4.2126 -2.3807 36 1 11.1962 6.2881 -2.6093 37 1 8.0505 4.1766 1.2901 38 1 6.9073 2.8155 1.3833 39 1 8.5895 1.3263 0.3403 40 1 9.7322 2.6869 0.2344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877138871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:22 Heat of formation + Delta-G solvation = 123.129520 kcal Electronic energy + Delta-G solvation = -21033.109736 eV Core-core repulsion = 17885.416194 eV Total energy + Delta-G solvation = -3147.693543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.07775 -37.82402 -36.17754 -35.68503 -32.90701 -32.48792 -31.58968 -29.99765 -27.68493 -27.03769 -25.33929 -23.56403 -22.85233 -21.70172 -20.82610 -19.63560 -17.46975 -17.06395 -16.48238 -16.21201 -15.48909 -15.12126 -14.73526 -14.60497 -14.22822 -13.94100 -13.64734 -13.46064 -13.14474 -12.88199 -12.45406 -12.25460 -12.06157 -11.89641 -11.85727 -11.66184 -11.34379 -11.22812 -11.21722 -11.08577 -10.71553 -10.67942 -10.46420 -10.13240 -9.91088 -9.86431 -9.30636 -8.95129 -8.47417 -7.35750 -6.07498 -4.08495 1.75878 2.38201 2.75466 3.25848 3.29714 3.30059 3.38469 3.43000 4.16188 4.36399 4.39790 4.52209 4.57534 4.68015 4.88651 4.96092 5.05254 5.17092 5.21792 5.29008 5.30889 5.52469 5.56109 5.64967 5.68208 5.76389 5.81561 5.91407 6.09355 6.20930 6.38795 6.43486 6.69279 6.77241 7.16139 7.26321 7.74822 7.94060 8.06831 8.11066 8.44494 8.71364 8.99936 9.56656 11.02795 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.004071 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.704161 B = 6875.886188 C = 7800.825997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.298 5.298 5 C -0.038 4.038 6 C 0.000 4.000 7 C 0.128 3.872 8 N -0.524 5.524 9 C 0.186 3.814 10 C -0.507 4.507 11 H 0.064 0.936 12 C 0.058 3.942 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.074 3.926 19 C -0.070 4.070 20 C 0.229 3.771 21 N -0.466 5.466 22 N -0.264 5.264 23 N -0.094 5.094 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.188 0.812 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.007 0.993 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.750 -9.272 -1.539 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.004 4.004 4 N -0.092 5.092 5 C -0.189 4.189 6 C -0.138 4.138 7 C -0.002 4.002 8 N -0.247 5.247 9 C 0.061 3.939 10 C -0.546 4.546 11 H 0.083 0.917 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.056 4.056 19 C -0.112 4.112 20 C -0.088 4.088 21 N -0.144 5.144 22 N -0.132 5.132 23 N -0.073 5.073 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.206 0.794 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.479 -10.060 1.209 20.203 hybrid contribution 0.609 1.244 -1.219 1.845 sum -16.869 -8.816 -0.010 19.034 Atomic orbital electron populations 1.21702 0.94046 1.02691 1.02308 1.21819 0.96793 0.94776 1.04169 1.22131 0.73295 0.99852 1.05129 1.47326 1.08773 1.34086 1.18984 1.23385 0.90945 1.04736 0.99822 1.22045 0.95559 1.00300 0.95887 1.20389 0.90231 0.92593 0.96958 1.62397 1.39121 1.21253 1.01929 1.19887 0.86695 0.94142 0.93170 1.21160 1.13155 0.99697 1.20564 0.91746 1.24939 0.95970 0.98312 0.95132 1.69941 1.18905 1.37626 1.27164 0.86508 0.78112 0.84329 0.78907 1.19661 1.21132 1.21066 1.22017 0.93593 0.97779 0.92217 1.20176 1.02753 1.03077 0.85170 1.29323 0.92288 0.92154 0.95041 1.81197 1.10485 1.10197 1.12540 1.75058 1.09219 1.15409 1.13498 1.78209 0.96539 1.17675 1.14895 0.92255 0.91781 0.92127 0.90048 0.91112 0.87811 0.88545 0.79448 0.93187 0.89286 0.97505 0.95063 0.92928 0.89389 0.91337 0.88014 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.30 16 2 C -0.14 -0.89 6.06 -26.73 -0.16 -1.05 16 3 C 0.12 0.83 6.46 -4.04 -0.03 0.81 16 4 N -0.30 -3.51 3.44 -61.26 -0.21 -3.72 16 5 C -0.04 -0.47 11.50 -17.05 -0.20 -0.66 16 6 C 0.00 0.00 5.96 -82.78 -0.49 -0.49 16 7 C 0.13 1.99 5.32 -4.97 -0.03 1.96 16 8 N -0.52 -9.86 4.69 -237.51 -1.11 -10.98 16 9 C 0.19 4.18 4.53 -4.98 -0.02 4.16 16 10 C -0.51 -13.03 8.40 -34.44 -0.29 -13.32 16 11 H 0.06 1.68 7.38 -52.49 -0.39 1.29 16 12 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -24.89 13.29 55.43 0.74 -24.15 16 14 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.07 1.36 4.94 -3.82 -0.02 1.34 16 19 C -0.07 -1.17 5.05 -29.51 -0.15 -1.32 16 20 C 0.23 4.18 15.44 -20.69 -0.32 3.86 16 21 N -0.47 -9.37 18.55 42.24 0.78 -8.59 16 22 N -0.26 -4.41 11.39 33.29 0.38 -4.03 16 23 N -0.09 -1.43 12.91 60.35 0.78 -0.65 16 24 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.05 0.75 6.07 -51.93 -0.32 0.44 16 33 H 0.09 1.26 7.92 -51.93 -0.41 0.85 16 34 H 0.01 0.17 6.01 -51.93 -0.31 -0.14 16 35 H 0.03 0.75 7.91 -51.93 -0.41 0.33 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.09 1.78 6.98 -51.93 -0.36 1.42 16 38 H 0.07 1.26 6.45 -51.93 -0.33 0.93 16 39 H 0.10 1.53 6.34 -51.93 -0.33 1.20 16 40 H 0.12 2.11 6.28 -51.93 -0.33 1.78 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -31.47 338.74 -5.69 -37.17 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.70 Total: -2.44 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.43 Total: -3.56 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 1.35 Total: -52.11 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.47 -5.69 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877138871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.298 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds