Wall clock time and date at job start Mon Mar 30 2020 02:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47571 * 2 1 4 4 N 1.46499 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.35311 * 125.86903 * 124.71754 * 4 3 2 6 6 C 1.35349 * 106.17339 * 179.90299 * 5 4 3 7 7 C 1.50702 * 126.75137 * 180.12372 * 6 5 4 8 8 N 1.46900 * 109.47139 * 95.24331 * 7 6 5 9 9 C 1.46894 * 111.00200 * 190.00141 * 8 7 6 10 10 C 1.50703 * 109.47518 * 168.98609 * 9 8 7 11 11 H 1.08002 * 119.99394 * 354.96168 * 10 9 8 12 12 C 1.37874 * 120.00083 * 174.96806 * 10 9 8 13 13 N 1.31511 * 120.00217 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99911 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47197 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47190 * 119.99250 * 14 12 10 17 17 H 1.48499 * 109.47139 * 239.99496 * 14 12 10 18 18 C 1.46900 * 111.00057 * 66.04475 * 8 7 6 19 19 C 1.53006 * 109.46670 * 61.92711 * 18 8 7 20 20 C 1.47204 * 109.47037 * 179.58607 * 19 18 8 21 21 N 8.96092 * 155.50360 * 61.07744 * 2 1 3 22 22 N 1.33774 * 106.49835 * 0.34994 * 6 5 4 23 23 N 1.28631 * 108.88374 * 359.77257 * 22 6 5 24 24 H 1.08995 * 109.46984 * 59.99992 * 1 2 3 25 25 H 1.08999 * 109.47265 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46520 * 299.99939 * 1 2 3 27 27 H 1.09004 * 109.47148 * 119.99920 * 2 1 3 28 28 H 1.09006 * 109.47079 * 239.99690 * 2 1 3 29 29 H 1.09004 * 109.46819 * 300.00121 * 3 2 1 30 30 H 1.08995 * 109.46707 * 59.99860 * 3 2 1 31 31 H 1.07998 * 126.91179 * 0.02562 * 5 4 3 32 32 H 1.08999 * 109.47125 * 215.24576 * 7 6 5 33 33 H 1.09006 * 109.47011 * 335.24615 * 7 6 5 34 34 H 1.09000 * 109.47177 * 288.98758 * 9 8 7 35 35 H 1.09005 * 109.47109 * 48.98445 * 9 8 7 36 36 H 0.96999 * 120.00424 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47351 * 181.92619 * 18 8 7 38 38 H 1.08999 * 109.47379 * 301.93301 * 18 8 7 39 39 H 1.08997 * 109.47251 * 299.58785 * 19 18 8 40 40 H 1.08998 * 109.46856 * 59.59574 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2976 2.0670 -0.9022 6 6 5.5721 1.8089 -0.5265 7 6 6.8277 2.2861 -1.2096 8 7 7.3032 3.5139 -0.5581 9 6 8.3814 4.1389 -1.3357 10 6 8.6572 5.5179 -0.7940 11 1 8.0354 5.9244 -0.0100 12 6 9.7032 6.2606 -1.2992 13 7 10.4605 5.7655 -2.2536 14 14 10.0454 7.9696 -0.6272 15 1 9.0574 8.2914 0.4337 16 1 11.4159 8.0120 -0.0570 17 1 9.9347 8.9642 -1.7243 18 6 7.7356 3.2451 0.8199 19 6 8.9065 2.2604 0.8039 20 6 9.3463 1.9986 2.1841 21 7 9.6843 1.7969 3.2521 22 7 5.4979 1.0426 0.5675 23 7 4.2596 0.8436 0.8532 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8899 31 1 3.9776 2.6549 -1.7496 32 1 7.5956 1.5159 -1.1379 33 1 6.6151 2.4907 -2.2590 34 1 9.2833 3.5316 -1.2597 35 1 8.0800 4.2126 -2.3807 36 1 11.1962 6.2881 -2.6093 37 1 8.0505 4.1766 1.2901 38 1 6.9073 2.8155 1.3833 39 1 8.5895 1.3263 0.3403 40 1 9.7322 2.6869 0.2344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877138871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:22 Heat of formation + Delta-G solvation = 102.703767 kcal Electronic energy + Delta-G solvation = -21033.995463 eV Core-core repulsion = 17885.416194 eV Total energy + Delta-G solvation = -3148.579270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.09520 -39.29990 -37.34252 -36.78344 -34.70089 -33.42011 -32.78060 -31.49365 -29.12169 -27.87525 -26.76730 -25.26739 -23.53469 -22.84429 -21.89004 -20.93556 -18.88249 -18.21195 -17.98721 -17.40476 -16.79593 -16.25183 -16.01703 -15.87580 -15.56806 -15.22810 -14.94485 -14.49901 -14.30805 -14.07198 -13.57526 -13.46027 -13.42329 -13.07773 -12.93884 -12.91550 -12.71442 -12.60751 -12.44393 -12.38189 -12.23058 -11.87892 -11.82138 -11.56960 -11.46807 -11.19735 -10.83995 -10.49704 -10.04552 -8.89892 -8.09676 -6.15316 0.78887 1.44460 1.48420 1.56469 1.59314 1.64766 1.74721 1.79468 2.48277 3.04649 3.24908 3.42739 3.63899 3.72159 3.87977 4.05214 4.20349 4.24343 4.26448 4.36110 4.42275 4.51713 4.56010 4.67216 4.76229 4.83319 4.97756 5.04164 5.13013 5.16538 5.24802 5.32826 5.38732 5.44157 5.48171 5.78496 5.83523 6.18229 6.35514 6.59244 6.70669 7.00725 7.53217 7.65583 8.99855 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.004071 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.704161 B = 6875.886188 C = 7800.825997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.107 3.893 4 N -0.287 5.287 5 C -0.023 4.023 6 C -0.024 4.024 7 C 0.132 3.868 8 N -0.527 5.527 9 C 0.199 3.801 10 C -0.513 4.513 11 H 0.056 0.944 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.948 3.052 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.280 1.280 18 C 0.083 3.917 19 C -0.057 4.057 20 C 0.245 3.755 21 N -0.496 5.496 22 N -0.297 5.297 23 N -0.121 5.121 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.224 0.776 32 H 0.054 0.946 33 H 0.104 0.896 34 H -0.002 1.002 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.634 -9.013 -2.268 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.013 4.013 4 N -0.081 5.081 5 C -0.174 4.174 6 C -0.163 4.163 7 C 0.002 3.998 8 N -0.250 5.250 9 C 0.074 3.926 10 C -0.552 4.552 11 H 0.074 0.926 12 C -0.186 4.186 13 N -0.567 5.567 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.206 1.206 18 C -0.047 4.047 19 C -0.098 4.098 20 C -0.071 4.071 21 N -0.175 5.175 22 N -0.164 5.164 23 N -0.100 5.100 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.124 0.876 31 H 0.241 0.759 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.015 0.985 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.141 0.859 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.400 -9.820 0.503 21.750 hybrid contribution 1.063 1.129 -1.012 1.852 sum -18.337 -8.691 -0.509 20.299 Atomic orbital electron populations 1.21675 0.92216 1.03079 1.03255 1.21754 0.98223 0.94177 1.02844 1.22615 0.70664 1.00649 1.07328 1.47700 1.10245 1.32445 1.17739 1.23892 0.90071 1.03483 1.00003 1.22020 0.96350 1.01523 0.96392 1.20393 0.90768 0.91067 0.97530 1.62255 1.37489 1.23469 1.01751 1.19566 0.87363 0.93015 0.92699 1.21456 1.12652 1.01129 1.19925 0.92565 1.25590 0.96122 1.01366 0.95521 1.70023 1.19512 1.38840 1.28344 0.85658 0.77660 0.80874 0.78370 1.19418 1.21287 1.20601 1.21833 0.94033 0.96915 0.91939 1.20108 1.01809 1.03620 0.84294 1.29499 0.91434 0.91193 0.95005 1.81206 1.11482 1.11363 1.13445 1.74990 1.10291 1.16566 1.14579 1.78133 0.96538 1.19061 1.16226 0.90794 0.91738 0.91664 0.92199 0.91665 0.84347 0.87620 0.75916 0.92758 0.87735 0.98456 0.96230 0.92927 0.91690 0.91202 0.85870 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.91 71.98 0.71 -0.23 16 2 C -0.13 -1.48 6.06 30.59 0.19 -1.29 16 3 C 0.11 1.22 6.46 86.38 0.56 1.77 16 4 N -0.29 -6.16 3.44 -347.74 -1.20 -7.35 16 5 C -0.02 -0.49 11.50 83.49 0.96 0.47 16 6 C -0.02 -0.68 5.96 41.60 0.25 -0.43 16 7 C 0.13 3.89 5.32 85.56 0.45 4.35 16 8 N -0.53 -19.41 4.69 -905.34 -4.24 -23.66 16 9 C 0.20 8.92 4.53 85.56 0.39 9.31 16 10 C -0.51 -26.31 8.40 25.60 0.21 -26.09 16 11 H 0.06 2.93 7.38 -2.91 -0.02 2.91 16 12 C 0.01 0.66 5.46 84.65 0.46 1.13 16 13 N -0.93 -51.41 13.29 21.45 0.28 -51.13 16 14 Si 0.95 42.65 29.54 68.60 2.03 44.67 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 C 0.08 3.03 4.94 86.31 0.43 3.45 16 19 C -0.06 -1.87 5.05 28.79 0.15 -1.72 16 20 C 0.25 8.89 15.44 89.42 1.38 10.27 16 21 N -0.50 -19.90 18.55 20.03 0.37 -19.53 16 22 N -0.30 -9.69 11.39 -48.60 -0.55 -10.24 16 23 N -0.12 -3.56 12.91 37.02 0.48 -3.09 16 24 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.06 0.94 8.12 -2.38 -0.02 0.92 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.14 0.65 8.07 -2.38 -0.02 0.63 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.22 3.05 8.06 -2.91 -0.02 3.02 16 32 H 0.05 1.56 6.07 -2.39 -0.01 1.54 16 33 H 0.10 2.74 7.92 -2.38 -0.02 2.72 16 34 H 0.00 -0.10 6.01 -2.39 -0.01 -0.12 16 35 H 0.02 0.93 7.91 -2.38 -0.02 0.91 16 36 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.06 2.65 6.98 -2.39 -0.02 2.63 16 38 H 0.07 2.55 6.45 -2.39 -0.02 2.54 16 39 H 0.12 3.57 6.34 -2.39 -0.02 3.56 16 40 H 0.11 3.95 6.28 -2.39 -0.01 3.93 16 Total: -1.00 -67.53 338.74 4.35 -63.18 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.04 Total: 6.16 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 6.14 Total: 0.99 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.86 Total: -115.00 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -67.53 4.35 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877138871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.883 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds