Wall clock time and date at job start Mon Mar 30 2020 01:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00018 * 2 1 4 4 C 1.53005 * 109.47104 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47528 * 63.80008 * 4 3 2 6 6 C 1.36944 * 119.99785 * 264.00928 * 5 4 3 7 7 H 1.07998 * 120.00139 * 144.17716 * 6 5 4 8 8 C 1.38815 * 119.99830 * 324.16839 * 6 5 4 9 9 N 1.31619 * 119.99850 * 158.44517 * 8 6 5 10 10 Si 1.86804 * 120.00102 * 338.45136 * 8 6 5 11 11 H 1.48505 * 109.46845 * 95.36289 * 10 8 6 12 12 H 1.48491 * 109.46853 * 215.36351 * 10 8 6 13 13 H 1.48492 * 109.47004 * 335.36580 * 10 8 6 14 14 C 1.46493 * 120.00108 * 84.00332 * 5 4 3 15 15 C 1.53006 * 109.47052 * 86.22502 * 14 5 4 16 16 C 1.53000 * 109.47011 * 185.07192 * 15 14 5 17 17 H 1.08995 * 110.02119 * 305.69944 * 16 15 14 18 18 C 1.54272 * 110.03003 * 184.30760 * 16 15 14 19 19 C 1.54888 * 104.19362 * 217.10909 * 18 16 15 20 20 C 1.54889 * 102.75067 * 37.94253 * 19 18 16 21 21 C 1.53873 * 110.02858 * 67.09550 * 16 15 14 22 22 F 1.39907 * 110.02935 * 238.56605 * 21 16 15 23 23 F 1.39894 * 110.03607 * 359.97438 * 21 16 15 24 24 H 1.08999 * 109.47529 * 59.99492 * 1 2 3 25 25 H 1.08999 * 109.46981 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46749 * 299.99475 * 1 2 3 27 27 H 1.09000 * 109.47244 * 60.00175 * 3 2 1 28 28 H 1.09003 * 109.46989 * 300.00228 * 3 2 1 29 29 H 1.09001 * 109.46836 * 303.79718 * 4 3 2 30 30 H 1.09003 * 109.46801 * 183.80285 * 4 3 2 31 31 H 0.96999 * 120.00100 * 180.02562 * 9 8 6 32 32 H 1.09009 * 109.47102 * 206.21923 * 14 5 4 33 33 H 1.08993 * 109.47506 * 326.22408 * 14 5 4 34 34 H 1.08994 * 109.47116 * 305.07729 * 15 14 5 35 35 H 1.09006 * 109.46784 * 65.07472 * 15 14 5 36 36 H 1.08998 * 110.48549 * 335.78587 * 18 16 15 37 37 H 1.09000 * 110.48089 * 98.29800 * 18 16 15 38 38 H 1.09000 * 110.75186 * 156.26032 * 19 18 16 39 39 H 1.08998 * 110.75676 * 279.44219 * 19 18 16 40 40 H 1.08998 * 110.48446 * 80.73554 * 20 19 18 41 41 H 1.09003 * 110.48540 * 203.24268 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9737 0.5384 -1.2402 6 6 4.2129 -0.8098 -1.2619 7 1 3.9706 -1.3871 -2.1419 8 6 4.7671 -1.4343 -0.1529 9 7 4.6155 -2.7307 0.0165 10 14 5.7277 -0.4347 1.0992 11 1 4.8301 -0.0477 2.2172 12 1 6.8515 -1.2498 1.6260 13 1 6.2647 0.7878 0.4496 14 6 4.1559 1.3344 -2.4564 15 6 5.5662 1.9276 -2.4712 16 6 5.7147 2.8598 -3.6754 17 1 5.4511 2.3311 -4.5913 18 6 7.1639 3.3811 -3.7644 19 6 7.0118 4.8460 -4.2440 20 6 5.7463 5.3231 -3.4891 21 6 4.8124 4.0939 -3.5008 22 9 3.9128 4.1847 -4.5684 23 9 4.1143 4.0101 -2.2915 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8528 0.5859 0.8531 30 1 3.9786 2.1782 0.0675 31 1 5.0024 -3.1671 0.7916 32 1 4.0203 0.6979 -3.3309 33 1 3.4225 2.1404 -2.4764 34 1 5.7332 2.4906 -1.5530 35 1 6.2980 1.1229 -2.5423 36 1 7.6421 3.3478 -2.7855 37 1 7.7351 2.7983 -4.4871 38 1 7.8800 5.4388 -3.9560 39 1 6.8595 4.8855 -5.3226 40 1 5.9956 5.6035 -2.4657 41 1 5.2837 6.1607 -4.0112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878696415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:04 Heat of formation + Delta-G solvation = -149.565250 kcal Electronic energy + Delta-G solvation = -23455.994476 eV Core-core repulsion = 19813.494064 eV Total energy + Delta-G solvation = -3642.500413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.89543 -47.94224 -39.23519 -38.56734 -37.24320 -34.07064 -32.94304 -30.52326 -28.88837 -27.93430 -27.17066 -25.16333 -24.11243 -22.37566 -21.57385 -20.97189 -18.85443 -18.55063 -17.81108 -17.54584 -17.19978 -16.98205 -16.41133 -15.85587 -15.65883 -15.47465 -15.35206 -14.87861 -14.67966 -14.46665 -14.29532 -14.05892 -13.84971 -13.44010 -13.32340 -13.02798 -12.85901 -12.67804 -12.45948 -12.34007 -12.27723 -12.10116 -11.94978 -11.78662 -11.68099 -11.54379 -11.33065 -11.12181 -10.59201 -10.40946 -8.74655 -8.08797 -5.44128 1.32382 1.40950 1.52667 2.49053 2.86879 3.03484 3.08387 3.10872 3.29345 3.35206 3.59533 4.11346 4.13059 4.24703 4.29027 4.32651 4.36146 4.39430 4.48791 4.52542 4.55684 4.59961 4.65371 4.68602 4.79043 4.83391 4.84780 4.90023 5.00469 5.10201 5.11408 5.14410 5.27117 5.36551 5.48658 6.00730 6.23451 6.52002 7.05101 7.71755 8.12779 9.12080 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.006511 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.620968 B = 4299.423256 C = 5181.624444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.048 3.952 4 C 0.127 3.873 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.032 0.968 8 C -0.021 4.021 9 N -0.954 5.954 10 Si 0.941 3.059 11 H -0.283 1.283 12 H -0.312 1.312 13 H -0.248 1.248 14 C 0.145 3.855 15 C -0.121 4.121 16 C -0.128 4.128 17 H 0.095 0.905 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.155 4.155 21 C 0.270 3.730 22 F -0.211 7.211 23 F -0.206 7.206 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.258 0.742 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 19.554 -6.267 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.030 4.030 4 C 0.002 3.998 5 N -0.328 5.328 6 C -0.362 4.362 7 H 0.050 0.950 8 C -0.216 4.216 9 N -0.600 5.600 10 Si 0.770 3.230 11 H -0.211 1.211 12 H -0.241 1.241 13 H -0.172 1.172 14 C 0.020 3.980 15 C -0.161 4.161 16 C -0.148 4.148 17 H 0.114 0.886 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.193 4.193 21 C 0.234 3.766 22 F -0.193 7.193 23 F -0.187 7.187 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.348 19.268 -6.197 20.376 hybrid contribution -0.342 -0.317 0.786 0.914 sum 2.006 18.951 -5.411 19.811 Atomic orbital electron populations 1.22825 0.81130 1.02686 1.00261 1.88183 1.20107 1.28511 1.95251 1.23199 0.95945 0.84386 0.99506 1.21405 0.92086 0.96949 0.89364 1.44042 1.77104 1.04307 1.07339 1.18479 1.33576 0.83043 1.01092 0.95042 1.25929 0.99601 0.95772 1.00308 1.70013 1.47875 1.11579 1.30505 0.85903 0.78239 0.79414 0.79437 1.21087 1.24062 1.17205 1.21169 0.95050 0.93606 0.88215 1.22049 0.99439 0.97901 0.96673 1.22813 0.97135 0.94017 1.00791 0.88642 1.22442 0.93054 0.96840 1.03013 1.22485 0.96946 0.95064 1.00545 1.23393 0.96028 0.95014 1.04849 1.22329 0.83500 1.00044 0.70695 1.92973 1.71635 1.97427 1.57215 1.92933 1.81893 1.97172 1.46728 0.93821 0.90178 0.92910 0.92247 0.93619 0.94119 0.90299 0.93340 0.94671 0.92428 0.92226 0.92344 0.90654 0.89246 0.87905 0.89755 0.87835 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.17 16 2 O -0.40 -18.53 10.41 -148.98 -1.55 -20.08 16 3 C 0.05 1.92 6.28 71.98 0.45 2.38 16 4 C 0.13 5.64 4.70 86.38 0.41 6.05 16 5 N -0.61 -29.61 2.06 -702.00 -1.45 -31.06 16 6 C -0.23 -13.73 9.70 84.03 0.81 -12.91 16 7 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 8 C -0.02 -1.28 5.30 84.86 0.45 -0.83 16 9 N -0.95 -62.48 13.97 21.65 0.30 -62.18 16 10 Si 0.94 47.74 24.90 68.60 1.71 49.45 16 11 H -0.28 -14.00 6.67 99.48 0.66 -13.33 16 12 H -0.31 -15.99 7.11 99.48 0.71 -15.28 16 13 H -0.25 -11.58 7.11 99.48 0.71 -10.87 16 14 C 0.14 5.91 5.41 86.38 0.47 6.38 16 15 C -0.12 -4.14 4.46 30.60 0.14 -4.01 16 16 C -0.13 -3.27 2.79 -10.07 -0.03 -3.30 16 17 H 0.10 2.47 8.02 -2.39 -0.02 2.45 16 18 C -0.12 -2.15 6.36 31.67 0.20 -1.95 16 19 C -0.11 -1.52 6.91 31.88 0.22 -1.30 16 20 C -0.16 -2.60 6.41 31.70 0.20 -2.40 16 21 C 0.27 6.77 2.24 31.35 0.07 6.84 16 22 F -0.21 -5.84 17.04 44.97 0.77 -5.08 16 23 F -0.21 -6.20 13.39 44.97 0.60 -5.60 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 25 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.71 8.02 -2.39 -0.02 1.70 16 29 H 0.04 2.01 3.28 -2.39 -0.01 2.00 16 30 H 0.08 3.03 8.12 -2.39 -0.02 3.01 16 31 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.03 1.51 8.01 -2.38 -0.02 1.49 16 33 H 0.06 2.23 5.69 -2.39 -0.01 2.21 16 34 H 0.06 2.07 7.66 -2.39 -0.02 2.05 16 35 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.07 1.44 7.85 -2.39 -0.02 1.42 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16 41 H 0.10 1.44 8.12 -2.39 -0.02 1.42 16 Total: -1.00 -73.30 328.62 5.98 -67.33 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.95 Total: 10.08 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 4.64 Total: -2.87 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -1.14 Total: -93.24 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.55 Total: -20.08 kcal Atomic # 9 Polarization: -12.04 SS G_CDS: 1.37 Total: -10.67 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.71 Total: 49.45 kcal Total: -73.30 5.98 -67.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878696415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.238 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds