Wall clock time and date at job start Mon Mar 30 2020 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47303 * 300.00259 * 3 2 1 6 6 H 1.48495 * 109.47340 * 60.00420 * 3 2 1 7 7 C 1.37873 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00057 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.46490 * 120.00322 * 269.99844 * 10 9 7 12 12 C 1.53001 * 109.47305 * 270.00146 * 11 10 9 13 13 C 1.52994 * 117.49861 * 243.74581 * 12 11 10 14 14 C 1.53007 * 117.49816 * 175.08594 * 12 11 10 15 15 C 1.34780 * 119.99566 * 90.00410 * 10 9 7 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 10 9 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 10 9 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 10 19 19 H 1.09003 * 115.54795 * 29.32506 * 18 17 15 20 20 C 1.53000 * 117.50165 * 243.62141 * 18 17 15 21 21 C 1.52994 * 59.99907 * 252.50793 * 20 18 17 22 22 H 1.08997 * 117.51720 * 107.47862 * 21 20 18 23 23 C 1.53000 * 117.49738 * 252.50813 * 21 20 18 24 24 C 1.53009 * 117.49650 * 197.37304 * 23 21 20 25 25 C 1.52994 * 117.50026 * 128.71352 * 23 21 20 26 26 H 0.97001 * 119.99961 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46796 * 60.00202 * 9 7 2 28 28 H 1.09000 * 109.46866 * 300.00632 * 9 7 2 29 29 H 1.09006 * 109.47028 * 30.00444 * 11 10 9 30 30 H 1.09002 * 109.47109 * 150.00022 * 11 10 9 31 31 H 1.09001 * 115.55065 * 29.41946 * 12 11 10 32 32 H 1.08998 * 117.50353 * 359.97438 * 13 12 11 33 33 H 1.09000 * 117.49987 * 145.02326 * 13 12 11 34 34 H 1.08996 * 117.49737 * 214.98076 * 14 12 11 35 35 H 1.09003 * 117.49762 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.47060 * 299.99722 * 17 15 10 37 37 H 1.09001 * 109.47380 * 59.99809 * 17 15 10 38 38 H 1.09001 * 117.49810 * 359.97438 * 20 18 17 39 39 H 1.08995 * 117.50134 * 145.01745 * 20 18 17 40 40 H 1.09003 * 115.55383 * 343.03687 * 23 21 20 41 41 H 1.08999 * 117.49848 * 359.97438 * 24 23 21 42 42 H 1.09001 * 117.49920 * 145.02103 * 24 23 21 43 43 H 1.08997 * 117.50185 * 214.97840 * 25 23 21 44 44 H 1.09001 * 117.49916 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6779 -4.1689 -1.2710 12 6 1.7469 -5.2999 -1.7125 13 6 2.3380 -6.7084 -1.7990 14 6 2.0075 -5.9368 -3.0791 15 6 2.6416 -4.1254 1.1649 16 8 2.2487 -3.6647 2.2158 17 6 3.6214 -5.2705 1.1637 18 6 3.9542 -5.6585 2.6058 19 1 3.1652 -5.4767 3.3356 20 6 5.4011 -5.4791 3.0697 21 6 4.8462 -6.8829 2.8201 22 1 5.1957 -7.4122 1.9337 23 6 4.5628 -7.7582 4.0426 24 6 4.4048 -9.2626 3.8129 25 6 3.1802 -8.4055 4.1427 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 2.6852 -3.3869 -2.0304 30 1 3.6875 -4.5590 -1.1416 31 1 0.7099 -5.2083 -1.3895 32 1 3.3903 -6.8293 -1.5419 33 1 1.6898 -7.5435 -1.5333 34 1 1.1420 -6.2644 -3.6549 35 1 2.8426 -5.5502 -3.6634 36 1 3.1810 -6.1249 0.6496 37 1 4.5336 -4.9677 0.6496 38 1 6.1160 -5.0851 2.3474 39 1 5.5642 -5.1791 4.1048 40 1 5.0369 -7.4378 4.9703 41 1 4.5024 -9.6287 2.7908 42 1 4.7746 -9.9319 4.5897 43 1 2.7447 -8.5113 5.1363 44 1 2.4723 -8.2075 3.3379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879097023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:47 Heat of formation + Delta-G solvation = 27.945655 kcal Electronic energy + Delta-G solvation = -21678.879507 eV Core-core repulsion = 18598.306075 eV Total energy + Delta-G solvation = -3080.573433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.46131 -38.33198 -37.11490 -35.37541 -34.30979 -32.51611 -29.59378 -27.51713 -25.90887 -23.71143 -22.89371 -22.46774 -22.29737 -20.92958 -20.58363 -19.69451 -18.28502 -16.58644 -16.43883 -15.69262 -15.56439 -15.09407 -14.78215 -14.62793 -14.14775 -13.89738 -13.59509 -13.12293 -12.64245 -12.48269 -12.06578 -11.84582 -11.69224 -11.51829 -11.44159 -11.38107 -11.22129 -10.98996 -10.87064 -10.78448 -10.63277 -10.57278 -10.32479 -10.07160 -9.82830 -9.75049 -9.56855 -9.40146 -8.78183 -8.41221 -7.62540 -6.01855 -4.06187 3.31117 3.38437 3.41741 3.48803 3.57019 3.83128 4.00769 4.05362 4.46331 4.56592 4.79840 4.83263 4.91506 5.01723 5.04005 5.06280 5.16758 5.31305 5.32263 5.37746 5.47186 5.51772 5.54897 5.68246 5.71051 5.79611 5.81723 5.87844 5.93525 5.95727 6.01676 6.03567 6.12071 6.14282 6.18018 6.24210 6.47491 6.58157 7.11789 7.48612 7.59885 7.95266 8.27010 8.48531 8.94243 9.17173 9.59025 11.06268 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015404 B = 0.004717 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.311777 B = 5934.783363 C = 7126.226931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.246 3.754 10 N -0.597 5.597 11 C 0.143 3.857 12 C -0.164 4.164 13 C -0.185 4.185 14 C -0.177 4.177 15 C 0.510 3.490 16 O -0.540 6.540 17 C -0.112 4.112 18 C -0.121 4.121 19 H 0.119 0.881 20 C -0.170 4.170 21 C -0.128 4.128 22 H 0.102 0.898 23 C -0.121 4.121 24 C -0.180 4.180 25 C -0.176 4.176 26 H 0.262 0.738 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.604 -17.285 -0.361 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.328 5.328 11 C 0.018 3.982 12 C -0.183 4.183 13 C -0.222 4.222 14 C -0.215 4.215 15 C 0.296 3.704 16 O -0.417 6.417 17 C -0.152 4.152 18 C -0.140 4.140 19 H 0.137 0.863 20 C -0.207 4.207 21 C -0.146 4.146 22 H 0.120 0.880 23 C -0.139 4.139 24 C -0.217 4.217 25 C -0.213 4.213 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.222 -16.885 0.196 18.781 hybrid contribution 0.429 0.948 -0.159 1.053 sum 8.651 -15.936 0.037 18.133 Atomic orbital electron populations 1.69945 1.05977 1.26819 1.50684 1.24930 0.94864 0.99180 0.95150 0.86461 0.80018 0.83491 0.77559 1.19825 1.21002 1.20898 1.21481 0.93364 0.90718 1.50715 0.92466 1.19266 0.87555 0.82219 0.98311 1.48174 1.45862 1.34789 1.03964 1.20994 0.95032 0.94589 0.87553 1.22948 1.01485 0.93867 1.00032 1.23050 1.01398 0.95318 1.02468 1.22909 1.03343 1.04455 0.90747 1.20238 0.82229 0.83820 0.84070 1.90650 1.58451 1.61683 1.30931 1.21316 0.99524 0.98167 0.96231 1.22184 0.94611 0.99826 0.97349 0.86333 1.23118 0.96982 0.98161 1.02403 1.21864 1.05401 0.89291 0.98010 0.87960 1.21729 1.00419 0.93395 0.98335 1.22975 1.03049 0.93198 1.02448 1.22971 0.91292 1.04076 1.02954 0.92830 0.95066 0.93940 0.89588 0.91534 0.87423 0.88952 0.89210 0.89025 0.88781 0.89057 0.89774 0.88951 0.88889 0.87914 0.88904 0.89130 0.89027 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -14.96 9.39 -34.44 -0.32 -15.28 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 6.45 5.16 -5.19 -0.03 6.43 16 10 N -0.60 -12.58 2.46 -175.06 -0.43 -13.01 16 11 C 0.14 2.31 5.49 -4.05 -0.02 2.29 16 12 C -0.16 -2.28 5.95 -90.62 -0.54 -2.82 16 13 C -0.19 -2.03 9.17 -26.70 -0.24 -2.27 16 14 C -0.18 -1.97 10.26 -26.69 -0.27 -2.25 16 15 C 0.51 10.64 7.67 -10.98 -0.08 10.55 16 16 O -0.54 -13.72 15.14 5.56 0.08 -13.64 16 17 C -0.11 -1.69 4.53 -27.88 -0.13 -1.81 16 18 C -0.12 -1.76 5.06 -90.62 -0.46 -2.22 16 19 H 0.12 2.03 7.31 -51.93 -0.38 1.65 16 20 C -0.17 -2.14 9.90 -26.73 -0.26 -2.40 16 21 C -0.13 -1.46 5.59 -90.63 -0.51 -1.96 16 22 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 23 C -0.12 -1.27 5.87 -90.62 -0.53 -1.81 16 24 C -0.18 -1.63 10.26 -26.69 -0.27 -1.90 16 25 C -0.18 -1.81 10.18 -26.70 -0.27 -2.09 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 29 H 0.09 1.46 8.07 -51.93 -0.42 1.05 16 30 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 31 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 32 H 0.09 0.91 7.86 -51.93 -0.41 0.50 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.20 6.83 -51.93 -0.35 0.84 16 37 H 0.08 1.14 7.13 -51.93 -0.37 0.77 16 38 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -32.20 364.26 -10.86 -43.06 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.67 Total: 3.03 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -4.04 Total: -15.89 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.31 Total: -39.07 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.20 -10.86 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879097023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.001 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds