Wall clock time and date at job start Mon Mar 30 2020 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47303 * 300.00259 * 3 2 1 6 6 H 1.48495 * 109.47340 * 60.00420 * 3 2 1 7 7 C 1.37873 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00057 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.46490 * 120.00322 * 269.99844 * 10 9 7 12 12 C 1.53001 * 109.47305 * 270.00146 * 11 10 9 13 13 C 1.52994 * 117.49861 * 243.74581 * 12 11 10 14 14 C 1.53007 * 117.49816 * 175.08594 * 12 11 10 15 15 C 1.34780 * 119.99566 * 90.00410 * 10 9 7 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 10 9 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 10 9 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 10 19 19 H 1.09003 * 115.54795 * 29.32506 * 18 17 15 20 20 C 1.53000 * 117.50165 * 243.62141 * 18 17 15 21 21 C 1.52994 * 59.99907 * 252.50793 * 20 18 17 22 22 H 1.08997 * 117.51720 * 107.47862 * 21 20 18 23 23 C 1.53000 * 117.49738 * 252.50813 * 21 20 18 24 24 C 1.53009 * 117.49650 * 197.37304 * 23 21 20 25 25 C 1.52994 * 117.50026 * 128.71352 * 23 21 20 26 26 H 0.97001 * 119.99961 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46796 * 60.00202 * 9 7 2 28 28 H 1.09000 * 109.46866 * 300.00632 * 9 7 2 29 29 H 1.09006 * 109.47028 * 30.00444 * 11 10 9 30 30 H 1.09002 * 109.47109 * 150.00022 * 11 10 9 31 31 H 1.09001 * 115.55065 * 29.41946 * 12 11 10 32 32 H 1.08998 * 117.50353 * 359.97438 * 13 12 11 33 33 H 1.09000 * 117.49987 * 145.02326 * 13 12 11 34 34 H 1.08996 * 117.49737 * 214.98076 * 14 12 11 35 35 H 1.09003 * 117.49762 * 0.02562 * 14 12 11 36 36 H 1.09002 * 109.47060 * 299.99722 * 17 15 10 37 37 H 1.09001 * 109.47380 * 59.99809 * 17 15 10 38 38 H 1.09001 * 117.49810 * 359.97438 * 20 18 17 39 39 H 1.08995 * 117.50134 * 145.01745 * 20 18 17 40 40 H 1.09003 * 115.55383 * 343.03687 * 23 21 20 41 41 H 1.08999 * 117.49848 * 359.97438 * 24 23 21 42 42 H 1.09001 * 117.49920 * 145.02103 * 24 23 21 43 43 H 1.08997 * 117.50185 * 214.97840 * 25 23 21 44 44 H 1.09001 * 117.49916 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6779 -4.1689 -1.2710 12 6 1.7469 -5.2999 -1.7125 13 6 2.3380 -6.7084 -1.7990 14 6 2.0075 -5.9368 -3.0791 15 6 2.6416 -4.1254 1.1649 16 8 2.2487 -3.6647 2.2158 17 6 3.6214 -5.2705 1.1637 18 6 3.9542 -5.6585 2.6058 19 1 3.1652 -5.4767 3.3356 20 6 5.4011 -5.4791 3.0697 21 6 4.8462 -6.8829 2.8201 22 1 5.1957 -7.4122 1.9337 23 6 4.5628 -7.7582 4.0426 24 6 4.4048 -9.2626 3.8129 25 6 3.1802 -8.4055 4.1427 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8896 29 1 2.6852 -3.3869 -2.0304 30 1 3.6875 -4.5590 -1.1416 31 1 0.7099 -5.2083 -1.3895 32 1 3.3903 -6.8293 -1.5419 33 1 1.6898 -7.5435 -1.5333 34 1 1.1420 -6.2644 -3.6549 35 1 2.8426 -5.5502 -3.6634 36 1 3.1810 -6.1249 0.6496 37 1 4.5336 -4.9677 0.6496 38 1 6.1160 -5.0851 2.3474 39 1 5.5642 -5.1791 4.1048 40 1 5.0369 -7.4378 4.9703 41 1 4.5024 -9.6287 2.7908 42 1 4.7746 -9.9319 4.5897 43 1 2.7447 -8.5113 5.1363 44 1 2.4723 -8.2075 3.3379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879097023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:47 Heat of formation + Delta-G solvation = 11.359287 kcal Electronic energy + Delta-G solvation = -21679.598746 eV Core-core repulsion = 18598.306075 eV Total energy + Delta-G solvation = -3081.292671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93914 -39.36805 -38.31471 -36.40447 -35.97218 -34.59134 -31.11596 -29.20457 -27.49663 -25.07591 -24.38490 -23.23724 -23.16174 -22.13596 -21.72094 -20.64844 -19.81830 -18.61728 -17.99132 -17.25346 -16.67289 -16.39395 -16.16832 -15.88970 -15.64576 -14.98509 -14.69982 -14.47973 -14.34545 -13.90219 -13.67229 -13.30562 -13.20578 -12.82614 -12.63968 -12.57356 -12.44924 -12.27939 -12.26149 -12.22795 -12.04611 -11.71917 -11.70539 -11.47939 -11.23318 -10.90137 -10.70738 -10.65749 -10.52889 -10.25544 -9.42362 -8.23093 -6.38177 1.35042 1.37646 1.49570 1.88160 2.26832 2.42142 2.71930 2.98860 3.06212 3.12172 3.62001 3.72876 3.87883 3.93152 4.05654 4.06326 4.15236 4.20207 4.26417 4.34121 4.39995 4.55963 4.59054 4.72528 4.76570 4.81418 4.84729 4.85238 4.89369 4.95437 5.05633 5.07809 5.09175 5.23423 5.28506 5.31944 5.33479 5.34392 5.35224 5.46760 5.57137 5.86248 6.06108 6.70060 6.82947 7.28263 7.52817 8.84306 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015404 B = 0.004717 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.311777 B = 5934.783363 C = 7126.226931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.263 3.737 10 N -0.601 5.601 11 C 0.143 3.857 12 C -0.195 4.195 13 C -0.163 4.163 14 C -0.162 4.162 15 C 0.498 3.502 16 O -0.599 6.599 17 C -0.091 4.091 18 C -0.150 4.150 19 H 0.081 0.919 20 C -0.172 4.172 21 C -0.096 4.096 22 H 0.126 0.874 23 C -0.138 4.138 24 C -0.158 4.158 25 C -0.191 4.191 26 H 0.267 0.733 27 H 0.018 0.982 28 H -0.007 1.007 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.539 -19.170 -1.743 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.141 3.859 10 N -0.331 5.331 11 C 0.020 3.980 12 C -0.214 4.214 13 C -0.199 4.199 14 C -0.200 4.200 15 C 0.287 3.713 16 O -0.480 6.480 17 C -0.131 4.131 18 C -0.169 4.169 19 H 0.100 0.900 20 C -0.209 4.209 21 C -0.113 4.113 22 H 0.144 0.856 23 C -0.156 4.156 24 C -0.194 4.194 25 C -0.228 4.228 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.011 0.989 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.176 -18.809 -1.227 21.913 hybrid contribution -0.560 1.503 0.295 1.631 sum 10.616 -17.306 -0.932 20.324 Atomic orbital electron populations 1.70070 1.07640 1.28065 1.51189 1.25886 0.95806 1.03140 0.94428 0.85348 0.78814 0.78557 0.77976 1.18980 1.19315 1.20792 1.21743 0.93272 0.91945 1.51002 0.92806 1.18672 0.88033 0.83981 0.95196 1.48178 1.44879 1.33663 1.06392 1.21224 0.97179 0.94888 0.84710 1.22649 0.99712 0.95485 1.03589 1.23192 1.02545 0.93075 1.01130 1.23027 1.04025 1.02900 0.90015 1.21384 0.82373 0.84657 0.82844 1.90615 1.60628 1.63805 1.33001 1.21252 0.98514 0.95989 0.97324 1.22006 0.94861 1.03762 0.96250 0.90039 1.23229 0.95591 0.99441 1.02607 1.21933 1.02003 0.88480 0.98922 0.85577 1.21814 1.00730 0.94773 0.98267 1.23073 1.00695 0.92041 1.03618 1.22985 0.91487 1.05426 1.02867 0.92439 0.96352 0.98898 0.91044 0.88025 0.90489 0.86653 0.88327 0.88350 0.87258 0.86588 0.87145 0.87534 0.89279 0.87848 0.87703 0.87642 0.88838 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 7 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16 8 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 9 C 0.26 14.72 5.16 85.64 0.44 15.17 16 10 N -0.60 -26.29 2.46 -826.16 -2.03 -28.32 16 11 C 0.14 4.52 5.49 86.38 0.47 5.00 16 12 C -0.19 -5.26 5.95 -10.79 -0.06 -5.32 16 13 C -0.16 -2.98 9.17 30.62 0.28 -2.70 16 14 C -0.16 -3.17 10.26 30.62 0.31 -2.86 16 15 C 0.50 21.45 7.67 87.66 0.67 22.12 16 16 O -0.60 -32.52 15.14 -3.03 -0.05 -32.56 16 17 C -0.09 -2.60 4.53 29.85 0.14 -2.47 16 18 C -0.15 -4.26 5.06 -10.80 -0.05 -4.32 16 19 H 0.08 2.95 7.31 -2.39 -0.02 2.93 16 20 C -0.17 -4.03 9.90 30.59 0.30 -3.73 16 21 C -0.10 -1.93 5.59 -10.80 -0.06 -1.99 16 22 H 0.13 1.99 8.14 -2.39 -0.02 1.98 16 23 C -0.14 -2.64 5.87 -10.79 -0.06 -2.70 16 24 C -0.16 -2.36 10.26 30.62 0.31 -2.04 16 25 C -0.19 -3.72 10.18 30.62 0.31 -3.41 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 28 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 29 H 0.07 2.44 8.07 -2.38 -0.02 2.42 16 30 H 0.10 2.47 6.17 -2.39 -0.01 2.45 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.12 1.63 7.86 -2.39 -0.02 1.61 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.12 2.70 6.83 -2.39 -0.02 2.68 16 37 H 0.11 2.59 7.13 -2.39 -0.02 2.57 16 38 H 0.11 2.20 8.03 -2.39 -0.02 2.18 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -75.55 364.26 4.90 -70.65 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.95 Total: 19.99 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.71 Total: -20.26 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.74 Total: -85.65 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.05 Total: -32.56 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.55 4.90 -70.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879097023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.012 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds