Wall clock time and date at job start Mon Mar 30 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99841 * 2 1 4 4 H 1.48502 * 109.46959 * 270.00189 * 3 2 1 5 5 H 1.48506 * 109.47216 * 30.00164 * 3 2 1 6 6 H 1.48497 * 109.47057 * 150.00386 * 3 2 1 7 7 C 1.37871 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00526 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99640 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47196 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99988 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99596 * 179.97438 * 11 10 9 14 14 C 1.47415 * 125.65458 * 5.15312 * 13 11 10 15 15 C 1.54908 * 104.83713 * 155.83622 * 14 13 11 16 16 H 1.09007 * 111.00292 * 278.94062 * 15 14 13 17 17 C 1.52996 * 111.00667 * 155.12162 * 15 14 13 18 18 C 1.53008 * 117.49585 * 130.20137 * 17 15 14 19 19 C 1.53001 * 117.49678 * 61.54508 * 17 15 14 20 20 C 1.55157 * 101.58021 * 37.00956 * 15 14 13 21 21 C 1.47030 * 125.64381 * 185.11792 * 13 11 10 22 22 H 1.09007 * 109.87848 * 300.50765 * 21 13 11 23 23 C 1.52992 * 109.88452 * 61.51668 * 21 13 11 24 24 C 1.52998 * 117.50242 * 243.73232 * 23 21 13 25 25 C 1.52995 * 60.00277 * 252.51470 * 24 23 21 26 26 H 0.97000 * 120.00047 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47269 * 60.00067 * 9 7 2 28 28 H 1.09004 * 109.47318 * 299.99531 * 9 7 2 29 29 H 1.08998 * 109.47246 * 59.99344 * 10 9 7 30 30 H 1.09004 * 109.46536 * 299.99927 * 10 9 7 31 31 H 1.09004 * 110.37303 * 274.67660 * 14 13 11 32 32 H 1.09008 * 110.36217 * 36.99769 * 14 13 11 33 33 H 1.08990 * 115.55192 * 275.87321 * 17 15 14 34 34 H 1.08997 * 117.49638 * 0.02562 * 18 17 15 35 35 H 1.08999 * 117.49504 * 145.01829 * 18 17 15 36 36 H 1.08998 * 117.50067 * 214.97491 * 19 17 15 37 37 H 1.09006 * 117.49959 * 359.97438 * 19 17 15 38 38 H 1.08993 * 110.72160 * 206.13470 * 20 15 14 39 39 H 1.09002 * 110.71761 * 82.85804 * 20 15 14 40 40 H 1.09001 * 115.54917 * 29.45084 * 23 21 13 41 41 H 1.08996 * 117.49965 * 0.02562 * 24 23 21 42 42 H 1.09006 * 117.49779 * 145.01841 * 24 23 21 43 43 H 1.09001 * 117.49772 * 252.51246 * 25 24 23 44 44 H 1.09000 * 117.52040 * 107.48120 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5286 -2.6365 -0.0022 12 8 6.1349 -1.5862 -0.0018 13 7 6.2024 -3.8038 -0.0026 14 6 5.5988 -5.1443 -0.1107 15 6 6.7260 -6.0422 -0.6790 16 1 6.8051 -5.9325 -1.7606 17 6 6.5074 -7.5067 -0.2937 18 6 6.5854 -8.5500 -1.4101 19 6 5.2316 -8.1862 -0.7953 20 6 7.9762 -5.4599 0.0319 21 6 7.6614 -3.9509 0.1039 22 1 8.1476 -3.4310 -0.7216 23 6 8.1462 -3.3778 1.4371 24 6 9.0829 -2.1692 1.3877 25 6 9.6279 -3.5438 1.7803 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6800 -0.8912 29 1 3.6578 -3.1498 -0.8924 30 1 3.6585 -3.1509 0.8876 31 1 5.2884 -5.5011 0.8714 32 1 4.7494 -5.1239 -0.7937 33 1 6.8771 -7.7941 0.6905 34 1 6.7929 -8.1931 -2.4189 35 1 7.0062 -9.5240 -1.1602 36 1 4.7623 -8.9210 -0.1412 37 1 4.5478 -7.5898 -1.3994 38 1 8.8742 -5.6388 -0.5593 39 1 8.0816 -5.8799 1.0322 40 1 7.4308 -3.4274 2.2580 41 1 9.3536 -1.7819 0.4054 42 1 8.9838 -1.4230 2.1762 43 1 9.8874 -3.7021 2.8271 44 1 10.2573 -4.0615 1.0565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885221245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:43 Heat of formation + Delta-G solvation = -15.674521 kcal Electronic energy + Delta-G solvation = -21819.528986 eV Core-core repulsion = 18737.064041 eV Total energy + Delta-G solvation = -3082.464945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41442 -39.32869 -38.18063 -36.51813 -35.56922 -33.43613 -32.24264 -29.89255 -28.03825 -25.27715 -23.85713 -23.30367 -23.02575 -22.91897 -21.24450 -20.86841 -19.89190 -19.14269 -18.00221 -17.18016 -16.66691 -16.27467 -16.22382 -15.97450 -15.51044 -15.15265 -14.76342 -14.54905 -14.48496 -13.98042 -13.82642 -13.43609 -13.25174 -12.93354 -12.85203 -12.60862 -12.35564 -12.28448 -12.16298 -12.02935 -12.00706 -11.80622 -11.61151 -11.42557 -11.35544 -11.18157 -10.83831 -10.80174 -10.76185 -10.54603 -9.62979 -8.33691 -6.36615 1.30799 1.32535 1.48142 1.66626 1.99266 2.32977 2.84722 2.93543 3.01798 3.53949 3.55612 3.75132 3.86424 3.97106 4.07608 4.10919 4.16087 4.26484 4.31449 4.35073 4.39659 4.42708 4.51058 4.58522 4.65532 4.76616 4.82803 4.91822 4.93539 4.99647 5.00900 5.05274 5.15637 5.17154 5.24556 5.29087 5.33934 5.37330 5.40244 5.48160 5.52888 5.58224 6.21346 6.52511 6.69086 7.24245 7.28752 8.82065 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.004693 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.978185 B = 5964.577207 C = 7495.258035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.009 3.991 10 C -0.110 4.110 11 C 0.525 3.475 12 O -0.575 6.575 13 N -0.617 5.617 14 C 0.100 3.900 15 C -0.061 4.061 16 H 0.084 0.916 17 C -0.140 4.140 18 C -0.172 4.172 19 C -0.188 4.188 20 C -0.101 4.101 21 C 0.162 3.838 22 H 0.058 0.942 23 C -0.169 4.169 24 C -0.188 4.188 25 C -0.140 4.140 26 H 0.268 0.732 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.199 -19.109 0.314 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.029 4.029 10 C -0.150 4.150 11 C 0.316 3.684 12 O -0.454 6.454 13 N -0.351 5.351 14 C -0.022 4.022 15 C -0.080 4.080 16 H 0.102 0.898 17 C -0.158 4.158 18 C -0.208 4.208 19 C -0.225 4.225 20 C -0.139 4.139 21 C 0.059 3.941 22 H 0.076 0.924 23 C -0.188 4.188 24 C -0.225 4.225 25 C -0.177 4.177 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 20.311 -18.364 0.309 27.384 hybrid contribution -0.450 1.321 0.013 1.395 sum 19.862 -17.044 0.322 26.174 Atomic orbital electron populations 1.70019 1.07704 1.28127 1.52404 1.25765 0.95481 1.02714 0.94176 0.85850 0.79184 0.79618 0.79197 1.19286 1.20094 1.18862 1.21394 0.91079 0.93748 1.50486 0.93210 1.19196 0.94060 0.93476 0.96209 1.21455 0.89373 0.99860 1.04275 1.20850 0.90563 0.82257 0.74753 1.90632 1.71185 1.32339 1.51284 1.48647 1.07732 1.06070 1.72652 1.22557 0.97163 0.80492 1.01960 1.21872 0.93742 0.92392 1.00032 0.89763 1.22126 1.02952 0.91115 0.99619 1.23075 1.00254 0.99812 0.97704 1.23030 0.91212 1.03821 1.04396 1.22699 0.98433 0.90073 1.02696 1.21262 0.80187 0.97853 0.94758 0.92438 1.22501 0.94135 1.03674 0.98537 1.22886 1.05092 0.92183 1.02377 1.23033 0.93602 0.97812 1.03299 0.92304 0.97362 0.97409 0.88578 0.88709 0.90330 0.90423 0.86470 0.88746 0.87736 0.88125 0.89246 0.88077 0.88765 0.89694 0.89830 0.90170 0.87461 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.02 1.00 5.47 84.65 0.46 1.46 16 3 Si 0.94 47.78 27.47 68.60 1.88 49.66 16 4 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.26 -13.52 6.54 99.48 0.65 -12.87 16 7 C -0.53 -31.33 9.66 25.60 0.25 -31.09 16 8 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 9 C 0.01 0.44 3.33 29.85 0.10 0.54 16 10 C -0.11 -4.49 4.73 29.85 0.14 -4.35 16 11 C 0.53 20.37 7.60 87.66 0.67 21.04 16 12 O -0.58 -26.78 15.96 -3.03 -0.05 -26.83 16 13 N -0.62 -17.72 3.07 -788.06 -2.42 -20.13 16 14 C 0.10 2.11 5.88 86.86 0.51 2.62 16 15 C -0.06 -0.92 3.20 -9.40 -0.03 -0.95 16 16 H 0.08 1.31 7.97 -2.38 -0.02 1.29 16 17 C -0.14 -1.65 5.24 -10.79 -0.06 -1.71 16 18 C -0.17 -1.83 10.20 30.62 0.31 -1.52 16 19 C -0.19 -2.37 10.00 30.62 0.31 -2.06 16 20 C -0.10 -1.46 5.54 31.78 0.18 -1.29 16 21 C 0.16 3.84 3.06 45.34 0.14 3.97 16 22 H 0.06 1.53 7.91 -2.38 -0.02 1.51 16 23 C -0.17 -4.13 4.71 -10.80 -0.05 -4.18 16 24 C -0.19 -4.77 10.18 30.59 0.31 -4.45 16 25 C -0.14 -2.42 9.84 30.59 0.30 -2.11 16 26 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 27 H 0.01 0.44 7.16 -2.39 -0.02 0.42 16 28 H 0.01 0.41 7.53 -2.38 -0.02 0.39 16 29 H 0.10 3.62 7.76 -2.39 -0.02 3.60 16 30 H 0.09 3.62 8.14 -2.38 -0.02 3.60 16 31 H 0.08 1.55 8.04 -2.38 -0.02 1.53 16 32 H 0.08 1.66 7.51 -2.38 -0.02 1.64 16 33 H 0.12 1.19 7.94 -2.39 -0.02 1.17 16 34 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.17 7.61 -2.39 -0.02 1.15 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 42 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.11 1.49 8.11 -2.39 -0.02 1.47 16 Total: -1.00 -73.48 354.93 4.15 -69.33 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.89 Total: 11.44 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.54 Total: -24.08 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.12 Total: -79.53 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.88 Total: 49.66 kcal Total: -73.48 4.15 -69.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885221245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.659 kcal (2) G-P(sol) polarization free energy of solvation -73.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds