Wall clock time and date at job start Mon Mar 30 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38634 * 119.99603 * 2 1 4 4 C 1.39168 * 120.48551 * 359.97438 * 3 2 1 5 5 C 1.39134 * 118.26530 * 180.02562 * 4 3 2 6 6 N 1.38632 * 120.48238 * 179.97438 * 5 4 3 7 7 C 1.46507 * 119.99919 * 0.02562 * 6 5 4 8 8 C 1.53045 * 109.45819 * 205.00019 * 7 6 5 9 9 C 1.53186 * 109.31313 * 178.61343 * 8 7 6 10 10 N 1.46927 * 108.77731 * 54.63323 * 9 8 7 11 11 C 1.36932 * 120.63177 * 126.41349 * 10 9 8 12 12 H 1.08004 * 120.00038 * 207.66728 * 11 10 9 13 13 C 1.38814 * 119.99982 * 27.66313 * 11 10 9 14 14 N 1.31612 * 120.00200 * 17.37133 * 13 11 10 15 15 Si 1.86798 * 119.99944 * 197.36766 * 13 11 10 16 16 H 1.48495 * 109.47316 * 89.99828 * 15 13 11 17 17 H 1.48500 * 109.47279 * 210.00580 * 15 13 11 18 18 H 1.48504 * 109.47339 * 329.99883 * 15 13 11 19 19 C 1.46931 * 118.73618 * 306.39136 * 10 9 8 20 20 C 1.53033 * 109.45986 * 84.93096 * 7 6 5 21 21 N 1.33188 * 119.03269 * 0.26047 * 5 4 3 22 22 C 1.31734 * 120.87800 * 359.47925 * 21 5 4 23 23 N 1.31750 * 121.91180 * 0.53027 * 22 21 5 24 24 H 1.08997 * 109.47037 * 300.00040 * 1 2 3 25 25 H 1.09000 * 109.47441 * 59.99870 * 1 2 3 26 26 H 1.08995 * 109.46684 * 180.02562 * 1 2 3 27 27 H 0.96993 * 120.00142 * 180.02562 * 2 1 3 28 28 H 1.07993 * 120.86572 * 0.02562 * 4 3 2 29 29 H 0.97000 * 120.00551 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.44826 * 324.96172 * 7 6 5 31 31 H 1.09002 * 109.49510 * 298.56645 * 8 7 6 32 32 H 1.09002 * 109.49762 * 58.65615 * 8 7 6 33 33 H 1.08996 * 109.58858 * 174.41929 * 9 8 7 34 34 H 1.09000 * 109.58501 * 294.84718 * 9 8 7 35 35 H 0.96996 * 120.00390 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.59021 * 293.82309 * 19 10 9 37 37 H 1.08998 * 109.69942 * 173.46367 * 19 10 9 38 38 H 1.08999 * 109.49679 * 301.33365 * 20 7 6 39 39 H 1.08998 * 109.50318 * 61.40201 * 20 7 6 40 40 H 1.08004 * 119.04169 * 180.25036 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1581 1.2006 0.0000 4 6 1.4724 2.4117 -0.0005 5 6 2.2142 3.5888 -0.0011 6 7 1.5783 4.8207 -0.0021 7 6 0.1148 4.8897 -0.0022 8 6 -0.3329 6.2195 -0.6132 9 6 -1.8635 6.2734 -0.6433 10 7 -2.3721 6.0312 0.7137 11 6 -3.2401 6.9125 1.3010 12 1 -3.2690 7.0062 2.3766 13 6 -4.0828 7.6854 0.5141 14 7 -4.3046 7.3497 -0.7390 15 14 -4.9022 9.2020 1.2336 16 1 -4.0285 10.3840 1.0224 17 1 -6.2077 9.4251 0.5620 18 1 -5.1219 9.0027 2.6887 19 6 -1.9319 4.8252 1.4282 20 6 -0.4004 4.7876 1.4352 21 7 3.5440 3.5149 -0.0063 22 6 4.1562 2.3485 -0.0007 23 7 3.4897 1.2120 -0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0276 0.0005 27 1 1.9500 -0.8400 -0.0004 28 1 0.3928 2.4371 -0.0005 29 1 2.1022 5.6370 -0.0029 30 1 -0.2873 4.0656 -0.5915 31 1 0.0484 7.0436 -0.0102 32 1 0.0542 6.3019 -1.6288 33 1 -2.1879 7.2563 -0.9851 34 1 -2.2429 5.5060 -1.3181 35 1 -4.8937 7.8895 -1.2889 36 1 -2.3168 3.9398 0.9224 37 1 -2.3014 4.8501 2.4534 38 1 -0.0615 3.8508 1.8775 39 1 -0.0181 5.6248 2.0191 40 1 5.2360 2.3231 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892402880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:23 Heat of formation + Delta-G solvation = 76.352525 kcal Electronic energy + Delta-G solvation = -21681.405412 eV Core-core repulsion = 18531.683466 eV Total energy + Delta-G solvation = -3149.721945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69094 -38.21168 -36.44321 -35.29899 -32.83595 -31.58918 -30.57458 -29.77822 -28.97594 -26.69758 -25.16286 -23.49081 -22.67252 -22.03361 -21.53618 -19.43344 -18.12624 -17.80604 -16.78193 -15.59864 -15.22803 -15.10711 -15.05909 -14.76360 -14.23043 -13.99813 -13.95339 -13.70985 -13.62469 -13.16225 -12.91564 -12.40249 -12.32593 -11.65034 -11.48002 -11.17012 -10.96803 -10.79016 -10.61778 -10.44255 -10.33768 -10.16078 -9.98430 -9.70318 -9.66737 -9.03310 -8.54458 -8.22610 -7.81655 -6.77454 -5.86073 -3.28257 1.43506 1.78951 3.03333 3.29833 3.35307 3.41886 3.42597 4.20672 4.44393 4.52233 4.87072 5.06996 5.12221 5.20671 5.31787 5.32590 5.41713 5.46311 5.55951 5.60349 5.68953 5.79364 5.95972 6.16031 6.19295 6.37860 6.41688 6.44748 6.53708 6.69009 6.79354 6.86778 7.00731 7.23779 7.43083 7.52869 7.66698 7.74219 7.89843 8.37511 8.59139 9.13871 9.76887 10.32778 11.22843 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.030886 B = 0.003999 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.355611 B = 7000.484456 C = 7483.723093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.722 5.722 3 C 0.455 3.545 4 C -0.359 4.359 5 C 0.465 3.535 6 N -0.704 5.704 7 C 0.158 3.842 8 C -0.147 4.147 9 C 0.175 3.825 10 N -0.592 5.592 11 C -0.255 4.255 12 H 0.067 0.933 13 C 0.004 3.996 14 N -0.903 5.903 15 Si 0.903 3.097 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.148 3.852 20 C -0.145 4.145 21 N -0.617 5.617 22 C 0.370 3.630 23 N -0.622 5.622 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.405 0.595 28 H 0.138 0.862 29 H 0.403 0.597 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.021 0.979 35 H 0.255 0.745 36 H 0.018 0.982 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -11.328 0.302 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.354 5.354 3 C 0.215 3.785 4 C -0.393 4.393 5 C 0.223 3.777 6 N -0.332 5.332 7 C 0.054 3.946 8 C -0.187 4.187 9 C 0.048 3.952 10 N -0.314 5.314 11 C -0.384 4.384 12 H 0.084 0.916 13 C -0.195 4.195 14 N -0.547 5.547 15 Si 0.733 3.267 16 H -0.214 1.214 17 H -0.217 1.217 18 H -0.204 1.204 19 C 0.021 3.979 20 C -0.185 4.185 21 N -0.347 5.347 22 C 0.078 3.922 23 N -0.352 5.352 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.240 0.760 28 H 0.156 0.844 29 H 0.239 0.761 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.298 -11.224 0.183 15.927 hybrid contribution -0.934 0.783 0.300 1.256 sum 10.364 -10.441 0.483 14.719 Atomic orbital electron populations 1.21643 0.78559 1.02800 1.02125 1.44156 1.06024 1.05122 1.80087 1.18181 0.88116 0.86121 0.86100 1.21304 1.01700 0.91114 1.25183 1.18276 0.87915 0.86518 0.84944 1.45018 1.06854 1.04290 1.77074 1.21123 0.76634 0.99688 0.97134 1.22542 1.01813 0.95038 0.99270 1.20761 0.85895 1.02312 0.86236 1.44082 1.51400 1.21482 1.14463 1.19204 1.12836 1.14843 0.91542 0.91571 1.25031 0.97239 1.00641 0.96577 1.70014 1.38719 1.38398 1.07576 0.86284 0.78528 0.83404 0.78519 1.21403 1.21735 1.20411 1.20869 0.90353 0.89939 0.96744 1.22500 0.99293 1.00912 0.95817 1.67950 1.08636 1.30361 1.27712 1.24214 0.99829 0.81218 0.86942 1.67875 1.06674 1.32297 1.28338 0.92164 0.92267 0.90309 0.76010 0.84421 0.76142 0.90667 0.91948 0.92538 0.88871 0.96085 0.93541 0.96382 0.92460 0.92898 0.91897 0.79352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 9.95 59.85 0.60 1.39 16 2 N -0.72 -7.63 5.87 -67.11 -0.39 -8.02 16 3 C 0.45 6.27 7.70 -154.71 -1.19 5.08 16 4 C -0.36 -5.26 8.15 -38.90 -0.32 -5.58 16 5 C 0.47 7.19 7.68 -154.70 -1.19 6.00 16 6 N -0.70 -10.51 5.23 -53.80 -0.28 -10.79 16 7 C 0.16 2.55 2.11 -67.89 -0.14 2.40 16 8 C -0.15 -2.61 5.55 -26.61 -0.15 -2.75 16 9 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 10 N -0.59 -14.07 2.99 -172.32 -0.52 -14.59 16 11 C -0.25 -6.75 9.59 -15.06 -0.14 -6.89 16 12 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 13 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 14 N -0.90 -25.33 11.19 55.49 0.62 -24.70 16 15 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.15 2.93 6.51 -3.70 -0.02 2.90 16 20 C -0.14 -2.43 5.61 -26.61 -0.15 -2.58 16 21 N -0.62 -9.31 10.47 -13.88 -0.15 -9.46 16 22 C 0.37 4.92 12.28 -92.24 -1.13 3.79 16 23 N -0.62 -8.72 10.47 -13.88 -0.15 -8.86 16 24 H 0.06 0.54 7.97 -51.93 -0.41 0.13 16 25 H 0.06 0.53 7.97 -51.93 -0.41 0.12 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.41 3.62 8.95 -40.82 -0.37 3.25 16 28 H 0.14 1.96 5.11 -52.49 -0.27 1.69 16 29 H 0.40 5.72 8.73 -40.82 -0.36 5.37 16 30 H 0.08 1.24 6.51 -51.93 -0.34 0.90 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 38 H 0.05 0.83 7.77 -51.93 -0.40 0.42 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.19 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 322.58 15.07 4.86 4.86 Total: -1.00 -29.99 322.58 -10.77 -40.76 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.79 Total: 7.01 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -3.95 Total: 7.66 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -0.86 Total: -76.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.99 -10.77 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892402880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.115 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds