Wall clock time and date at job start Mon Mar 30 2020 01:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00167 * 2 1 4 4 C 1.50699 * 109.47574 * 179.97438 * 3 2 1 5 5 N 1.31788 * 119.08173 * 270.27798 * 4 3 2 6 6 C 1.32547 * 121.00755 * 180.28715 * 5 4 3 7 7 C 1.38122 * 119.20022 * 359.44100 * 6 5 4 8 8 C 1.39626 * 118.33032 * 0.27221 * 7 6 5 9 9 N 1.38545 * 120.52771 * 179.97438 * 8 7 6 10 10 C 1.46843 * 111.00297 * 56.04540 * 9 8 7 11 11 C 1.53038 * 109.52718 * 174.16165 * 10 9 8 12 12 C 1.53118 * 109.27902 * 59.17563 * 11 10 9 13 13 C 1.53122 * 109.16284 * 302.35487 * 12 11 10 14 14 H 1.09006 * 109.49705 * 297.71128 * 13 12 11 15 15 C 1.50694 * 109.50477 * 177.63396 * 13 12 11 16 16 H 1.08002 * 120.00429 * 245.43246 * 15 13 12 17 17 C 1.37885 * 120.00068 * 65.42804 * 15 13 12 18 18 N 1.31505 * 119.99994 * 9.57039 * 17 15 13 19 19 Si 1.86799 * 119.99996 * 189.56584 * 17 15 13 20 20 H 1.48495 * 109.47092 * 94.99231 * 19 17 15 21 21 H 1.48494 * 109.47219 * 214.99377 * 19 17 15 22 22 H 1.48498 * 109.47202 * 334.99469 * 19 17 15 23 23 C 1.46853 * 110.99905 * 291.83629 * 9 8 7 24 24 N 1.31754 * 119.08580 * 89.99800 * 4 3 2 25 25 H 1.09004 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47388 * 300.00225 * 1 2 3 27 27 H 1.09004 * 109.46638 * 60.00389 * 1 2 3 28 28 H 1.09000 * 109.47252 * 59.99343 * 3 2 1 29 29 H 1.09007 * 109.47003 * 300.00068 * 3 2 1 30 30 H 1.08000 * 120.40288 * 179.71102 * 6 5 4 31 31 H 1.07999 * 120.83069 * 180.29941 * 7 6 5 32 32 H 1.09008 * 109.46140 * 294.17900 * 10 9 8 33 33 H 1.08997 * 109.46229 * 54.15024 * 10 9 8 34 34 H 1.08996 * 109.50725 * 179.12085 * 11 10 9 35 35 H 1.08997 * 109.50006 * 299.24180 * 11 10 9 36 36 H 1.09001 * 109.52001 * 62.25057 * 12 11 10 37 37 H 1.08994 * 109.52536 * 182.44101 * 12 11 10 38 38 H 0.96997 * 120.00488 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46134 * 305.85361 * 23 9 8 40 40 H 1.08999 * 109.46305 * 65.82203 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.1502 1.1306 1.1526 6 6 5.4712 1.0316 1.1978 7 6 6.1834 0.9750 0.0157 8 6 5.4766 1.0307 -1.1871 9 7 6.1453 0.9782 -2.3994 10 6 6.9779 -0.2281 -2.4893 11 6 7.5848 -0.3274 -3.8907 12 6 8.4292 0.9199 -4.1655 13 6 7.5498 2.1648 -4.0180 14 1 6.7504 2.1353 -4.7584 15 6 8.3867 3.4000 -4.2298 16 1 8.5476 4.0897 -3.4144 17 6 8.9470 3.6496 -5.4647 18 7 8.6027 2.9194 -6.5027 19 14 10.1952 5.0252 -5.6630 20 1 11.5672 4.4691 -5.5470 21 1 10.0282 5.6567 -6.9966 22 1 9.9825 6.0433 -4.6031 23 6 6.9440 2.1918 -2.6129 24 7 4.1515 1.1357 -1.1505 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 5.9841 0.9911 2.1473 31 1 7.2600 0.8893 0.0218 32 1 7.7774 -0.1734 -1.7503 33 1 6.3644 -1.1080 -2.2961 34 1 8.2151 -1.2145 -3.9523 35 1 6.7859 -0.3959 -4.6291 36 1 9.2511 0.9680 -3.4512 37 1 8.8282 0.8738 -5.1788 38 1 8.9966 3.0953 -7.3715 39 1 6.3059 3.0694 -2.5094 40 1 7.7436 2.2351 -1.8734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894486244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:17 Heat of formation + Delta-G solvation = 13.260371 kcal Electronic energy + Delta-G solvation = -21445.761173 eV Core-core repulsion = 18261.010595 eV Total energy + Delta-G solvation = -3184.750578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15486 -38.56873 -37.73488 -34.43114 -33.23535 -32.38624 -30.59208 -30.01001 -28.19890 -25.99878 -25.03652 -24.59640 -23.20033 -21.85405 -21.35562 -18.82863 -17.59813 -17.42175 -16.69738 -16.13394 -15.62967 -15.60306 -15.19768 -14.91140 -14.42767 -14.25471 -13.90442 -13.40809 -12.95580 -12.64606 -12.59527 -12.55232 -12.46342 -11.91312 -11.61749 -11.01118 -10.92735 -10.89483 -10.79259 -10.42781 -10.27571 -10.03990 -9.89593 -9.69112 -9.48270 -9.31104 -9.16390 -8.83704 -8.36288 -8.00546 -6.05789 -4.08255 0.83105 1.14914 3.23094 3.28015 3.35820 3.37998 3.60259 3.90400 4.28701 4.40745 4.56523 4.76411 4.99923 5.08810 5.13617 5.21918 5.25957 5.26959 5.39612 5.47879 5.49506 5.55046 5.72708 5.86680 6.01374 6.10447 6.27054 6.33938 6.50902 6.55874 6.76215 6.89207 7.02774 7.03465 7.22573 7.34388 7.61979 7.68070 7.92372 8.02105 8.24908 8.37116 8.95245 9.55091 11.03330 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003860 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.819681 B = 7251.229148 C = 7287.680250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.136 3.864 4 C 0.324 3.676 5 N -0.518 5.518 6 C 0.152 3.848 7 C -0.254 4.254 8 C 0.376 3.624 9 N -0.504 5.504 10 C 0.073 3.927 11 C -0.117 4.117 12 C -0.107 4.107 13 C 0.055 3.945 14 H 0.046 0.954 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.081 3.919 24 N -0.489 5.489 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 -5.623 13.160 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.058 3.942 4 C 0.054 3.946 5 N -0.234 5.234 6 C -0.013 4.013 7 C -0.279 4.279 8 C 0.137 3.863 9 N -0.227 5.227 10 C -0.054 4.054 11 C -0.155 4.155 12 C -0.145 4.145 13 C 0.036 3.964 14 H 0.064 0.936 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.135 4.135 18 N -0.521 5.521 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.044 4.044 24 N -0.205 5.205 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.185 0.815 31 H 0.164 0.836 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.092 -5.763 12.558 17.110 hybrid contribution 2.126 0.898 0.457 2.353 sum -7.966 -4.865 13.014 16.016 Atomic orbital electron populations 1.22768 0.80260 1.03002 1.00236 1.87923 1.20119 1.26509 1.95517 1.20935 0.85129 0.85859 1.02303 1.22519 0.96427 0.92345 0.83268 1.68140 1.10308 1.14658 1.30330 1.23019 0.89259 0.90602 0.98435 1.23555 1.03525 1.05439 0.95416 1.20139 0.89047 0.87501 0.89588 1.58719 1.31529 1.05428 1.27005 1.22113 0.94109 0.90077 0.99070 1.21682 0.99678 0.99405 0.94693 1.21636 0.97338 0.93416 1.02124 1.18709 0.94842 0.93431 0.89454 0.93570 1.21041 1.31454 1.07047 0.96349 0.92731 1.24914 0.96640 0.96267 0.95680 1.69969 1.42009 1.40379 0.99734 0.86644 0.81974 0.82275 0.77508 1.20705 1.21245 1.19919 1.22459 0.93366 0.87430 1.01176 1.67922 1.09581 1.12899 1.30076 0.89415 0.93843 0.93617 0.90568 0.90277 0.81545 0.83562 0.94700 0.91916 0.92679 0.91420 0.94564 0.90447 0.92929 0.91774 0.95244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.13 10.69 -35.23 -0.38 -5.50 16 3 C 0.14 1.74 6.37 36.01 0.23 1.97 16 4 C 0.32 5.19 7.27 -157.23 -1.14 4.04 16 5 N -0.52 -7.77 10.33 -10.81 -0.11 -7.88 16 6 C 0.15 1.97 11.29 -17.29 -0.20 1.78 16 7 C -0.25 -3.69 8.85 -39.11 -0.35 -4.04 16 8 C 0.38 6.70 5.71 -154.78 -0.88 5.82 16 9 N -0.50 -9.72 4.70 -173.06 -0.81 -10.54 16 10 C 0.07 1.25 5.06 -3.84 -0.02 1.24 16 11 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 12 C -0.11 -2.38 5.09 -26.61 -0.14 -2.51 16 13 C 0.05 1.33 2.13 -91.70 -0.19 1.13 16 14 H 0.05 1.28 8.09 -51.93 -0.42 0.86 16 15 C -0.52 -13.90 8.48 -34.44 -0.29 -14.19 16 16 H 0.05 1.44 7.77 -52.49 -0.41 1.03 16 17 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 18 N -0.88 -24.89 12.18 55.43 0.68 -24.21 16 19 Si 0.89 20.84 29.55 -169.99 -5.02 15.82 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.08 1.69 4.44 -3.83 -0.02 1.68 16 24 N -0.49 -8.96 10.37 -9.97 -0.10 -9.06 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.15 1.87 7.26 -52.49 -0.38 1.48 16 32 H 0.03 0.55 7.19 -51.92 -0.37 0.18 16 33 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.92 6.98 -51.93 -0.36 1.56 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.40 8.10 -51.93 -0.42 0.98 16 40 H 0.03 0.59 7.83 -51.93 -0.41 0.18 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -30.76 328.97 -9.07 -39.82 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.13 Total: -1.15 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.14 Total: -2.26 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.35 Total: -51.69 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.38 Total: -5.50 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.76 -9.07 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894486244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.085 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds