Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00167 * 2 1 4 4 C 1.50699 * 109.47574 * 179.97438 * 3 2 1 5 5 N 1.31788 * 119.08173 * 270.27798 * 4 3 2 6 6 C 1.32547 * 121.00755 * 180.28715 * 5 4 3 7 7 C 1.38122 * 119.20022 * 359.44100 * 6 5 4 8 8 C 1.39626 * 118.33032 * 0.27221 * 7 6 5 9 9 N 1.38545 * 120.52771 * 179.97438 * 8 7 6 10 10 C 1.46843 * 111.00297 * 56.04540 * 9 8 7 11 11 C 1.53038 * 109.52718 * 174.16165 * 10 9 8 12 12 C 1.53118 * 109.27902 * 59.17563 * 11 10 9 13 13 C 1.53122 * 109.16284 * 302.35487 * 12 11 10 14 14 H 1.09006 * 109.49705 * 297.71128 * 13 12 11 15 15 C 1.50694 * 109.50477 * 177.63396 * 13 12 11 16 16 H 1.08002 * 120.00429 * 245.43246 * 15 13 12 17 17 C 1.37885 * 120.00068 * 65.42804 * 15 13 12 18 18 N 1.31505 * 119.99994 * 9.57039 * 17 15 13 19 19 Si 1.86799 * 119.99996 * 189.56584 * 17 15 13 20 20 H 1.48495 * 109.47092 * 94.99231 * 19 17 15 21 21 H 1.48494 * 109.47219 * 214.99377 * 19 17 15 22 22 H 1.48498 * 109.47202 * 334.99469 * 19 17 15 23 23 C 1.46853 * 110.99905 * 291.83629 * 9 8 7 24 24 N 1.31754 * 119.08580 * 89.99800 * 4 3 2 25 25 H 1.09004 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47388 * 300.00225 * 1 2 3 27 27 H 1.09004 * 109.46638 * 60.00389 * 1 2 3 28 28 H 1.09000 * 109.47252 * 59.99343 * 3 2 1 29 29 H 1.09007 * 109.47003 * 300.00068 * 3 2 1 30 30 H 1.08000 * 120.40288 * 179.71102 * 6 5 4 31 31 H 1.07999 * 120.83069 * 180.29941 * 7 6 5 32 32 H 1.09008 * 109.46140 * 294.17900 * 10 9 8 33 33 H 1.08997 * 109.46229 * 54.15024 * 10 9 8 34 34 H 1.08996 * 109.50725 * 179.12085 * 11 10 9 35 35 H 1.08997 * 109.50006 * 299.24180 * 11 10 9 36 36 H 1.09001 * 109.52001 * 62.25057 * 12 11 10 37 37 H 1.08994 * 109.52536 * 182.44101 * 12 11 10 38 38 H 0.96997 * 120.00488 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46134 * 305.85361 * 23 9 8 40 40 H 1.08999 * 109.46305 * 65.82203 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.1502 1.1306 1.1526 6 6 5.4712 1.0316 1.1978 7 6 6.1834 0.9750 0.0157 8 6 5.4766 1.0307 -1.1871 9 7 6.1453 0.9782 -2.3994 10 6 6.9779 -0.2281 -2.4893 11 6 7.5848 -0.3274 -3.8907 12 6 8.4292 0.9199 -4.1655 13 6 7.5498 2.1648 -4.0180 14 1 6.7504 2.1353 -4.7584 15 6 8.3867 3.4000 -4.2298 16 1 8.5476 4.0897 -3.4144 17 6 8.9470 3.6496 -5.4647 18 7 8.6027 2.9194 -6.5027 19 14 10.1952 5.0252 -5.6630 20 1 11.5672 4.4691 -5.5470 21 1 10.0282 5.6567 -6.9966 22 1 9.9825 6.0433 -4.6031 23 6 6.9440 2.1918 -2.6129 24 7 4.1515 1.1357 -1.1505 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 5.9841 0.9911 2.1473 31 1 7.2600 0.8893 0.0218 32 1 7.7774 -0.1734 -1.7503 33 1 6.3644 -1.1080 -2.2961 34 1 8.2151 -1.2145 -3.9523 35 1 6.7859 -0.3959 -4.6291 36 1 9.2511 0.9680 -3.4512 37 1 8.8282 0.8738 -5.1788 38 1 8.9966 3.0953 -7.3715 39 1 6.3059 3.0694 -2.5094 40 1 7.7436 2.2351 -1.8734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894486244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -7.034439 kcal Electronic energy + Delta-G solvation = -21446.641222 eV Core-core repulsion = 18261.010595 eV Total energy + Delta-G solvation = -3185.630627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35036 -39.98577 -38.71250 -36.06057 -34.56394 -33.95182 -31.96598 -31.77222 -29.14234 -26.98448 -26.82782 -26.01843 -24.33105 -23.40911 -22.86797 -20.47341 -18.97504 -18.71566 -17.91473 -17.59496 -16.74132 -16.62382 -16.50879 -16.32004 -16.07945 -15.38707 -15.19720 -14.98427 -14.47986 -14.25489 -14.22881 -13.70975 -13.49173 -13.26425 -12.85891 -12.76488 -12.62834 -12.39897 -12.04148 -11.99353 -11.84290 -11.68057 -11.44441 -11.07264 -10.79052 -10.74618 -10.59507 -10.48031 -10.41384 -9.41280 -8.13112 -6.22613 -0.32487 0.00771 1.42025 1.43322 1.53215 2.16333 2.35665 2.47819 2.82624 3.17546 3.31460 3.49543 3.58203 3.95558 4.07567 4.11236 4.14378 4.22118 4.29238 4.44091 4.46689 4.53642 4.54757 4.58116 4.67898 4.75535 4.84184 4.86658 4.97613 5.02259 5.17214 5.31766 5.41778 5.63155 5.78015 5.83105 6.01642 6.02843 6.08544 6.28970 6.35997 6.88933 7.07192 7.44346 8.95815 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.003860 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.819681 B = 7251.229148 C = 7287.680250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.137 3.863 4 C 0.312 3.688 5 N -0.523 5.523 6 C 0.162 3.838 7 C -0.248 4.248 8 C 0.348 3.652 9 N -0.523 5.523 10 C 0.077 3.923 11 C -0.109 4.109 12 C -0.098 4.098 13 C 0.053 3.947 14 H -0.002 1.002 15 C -0.537 4.537 16 H 0.054 0.946 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.268 1.268 23 C 0.099 3.901 24 N -0.525 5.525 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.214 0.786 31 H 0.168 0.832 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.261 0.739 39 H 0.044 0.956 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 -5.965 15.723 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.059 3.941 4 C 0.043 3.957 5 N -0.239 5.239 6 C -0.003 4.003 7 C -0.273 4.273 8 C 0.111 3.889 9 N -0.247 5.247 10 C -0.049 4.049 11 C -0.147 4.147 12 C -0.136 4.136 13 C 0.034 3.966 14 H 0.016 0.984 15 C -0.576 4.576 16 H 0.073 0.927 17 C -0.181 4.181 18 N -0.554 5.554 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.192 1.192 23 C -0.026 4.026 24 N -0.242 5.242 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.231 0.769 31 H 0.186 0.814 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.550 -6.113 15.133 18.910 hybrid contribution 1.862 0.987 -0.303 2.129 sum -7.689 -5.126 14.830 17.473 Atomic orbital electron populations 1.23002 0.78077 1.04229 1.01508 1.87871 1.22553 1.26842 1.95756 1.21028 0.83663 0.86046 1.03396 1.23066 0.97733 0.91959 0.82991 1.68261 1.11351 1.14618 1.29659 1.23781 0.88614 0.88176 0.99754 1.23697 1.04473 1.04598 0.94502 1.20172 0.89241 0.89569 0.89929 1.58458 1.31814 1.05169 1.29220 1.22120 0.94718 0.89757 0.98289 1.21590 0.98968 0.98696 0.95417 1.21429 0.97560 0.94269 1.00344 1.18598 0.93666 0.93953 0.90356 0.98365 1.21414 1.31722 1.07956 0.96503 0.92737 1.25694 0.98326 0.98683 0.95408 1.70103 1.43095 1.42082 1.00114 0.85630 0.79711 0.79498 0.77349 1.19822 1.21262 1.19230 1.22034 0.93384 0.88015 0.99196 1.67863 1.10396 1.14239 1.31696 0.88275 0.91955 0.92932 0.88349 0.90223 0.76933 0.81438 0.92368 0.90502 0.89574 0.93440 0.93711 0.93764 0.92973 0.93712 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.68 16 2 O -0.41 -10.63 10.69 -148.98 -1.59 -12.22 16 3 C 0.14 3.38 6.37 71.24 0.45 3.84 16 4 C 0.31 9.68 7.27 138.76 1.01 10.69 16 5 N -0.52 -14.45 10.33 -188.10 -1.94 -16.40 16 6 C 0.16 3.65 11.29 84.56 0.95 4.61 16 7 C -0.25 -6.52 8.85 22.58 0.20 -6.32 16 8 C 0.35 12.09 5.71 133.16 0.76 12.85 16 9 N -0.52 -20.09 4.70 -701.43 -3.29 -23.38 16 10 C 0.08 2.53 5.06 86.33 0.44 2.96 16 11 C -0.11 -3.97 6.09 30.65 0.19 -3.79 16 12 C -0.10 -4.40 5.09 30.67 0.16 -4.24 16 13 C 0.05 2.68 2.13 -11.49 -0.02 2.66 16 14 H 0.00 -0.11 8.09 -2.38 -0.02 -0.13 16 15 C -0.54 -29.30 8.48 25.60 0.22 -29.08 16 16 H 0.05 2.90 7.77 -2.91 -0.02 2.87 16 17 C 0.02 1.01 5.22 84.66 0.44 1.45 16 18 N -0.92 -53.23 12.18 21.45 0.26 -52.97 16 19 Si 0.95 43.08 29.55 68.60 2.03 45.11 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.10 4.22 4.44 86.32 0.38 4.60 16 24 N -0.52 -19.17 10.37 -185.44 -1.92 -21.09 16 25 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.21 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.17 3.61 7.26 -2.91 -0.02 3.59 16 32 H 0.06 1.64 7.19 -2.38 -0.02 1.63 16 33 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 34 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.04 2.26 6.98 -2.39 -0.02 2.24 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.04 2.02 8.10 -2.39 -0.02 2.00 16 40 H 0.04 1.70 7.83 -2.39 -0.02 1.68 16 Total: -1.00 -69.06 328.97 0.98 -68.08 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.02 Total: 10.97 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.42 Total: 1.90 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -6.90 Total: -113.84 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.59 Total: -12.22 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -69.06 0.98 -68.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894486244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.049 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds