Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99989 * 2 1 4 4 C 1.50700 * 109.47343 * 179.97438 * 3 2 1 5 5 N 1.31782 * 119.08449 * 90.00000 * 4 3 2 6 6 C 1.32553 * 121.01443 * 179.97438 * 5 4 3 7 7 C 1.38116 * 119.19480 * 0.25897 * 6 5 4 8 8 C 1.39620 * 118.33302 * 359.52625 * 7 6 5 9 9 N 1.38551 * 120.53118 * 180.21936 * 8 7 6 10 10 C 1.46845 * 110.99564 * 56.04172 * 9 8 7 11 11 C 1.53042 * 109.52314 * 185.83790 * 10 9 8 12 12 C 1.53121 * 109.27756 * 300.82605 * 11 10 9 13 13 C 1.53110 * 109.16415 * 57.65078 * 12 11 10 14 14 H 1.09008 * 109.50476 * 62.28317 * 13 12 11 15 15 C 1.50694 * 109.50727 * 182.40505 * 13 12 11 16 16 H 1.08007 * 120.00344 * 119.80209 * 15 13 12 17 17 C 1.37878 * 120.00086 * 299.80718 * 15 13 12 18 18 N 1.31521 * 119.99611 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00468 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46791 * 59.99420 * 19 17 15 21 21 H 1.48498 * 109.47199 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46802 * 300.00133 * 19 17 15 23 23 C 1.46842 * 111.00014 * 180.25203 * 9 8 7 24 24 N 1.31750 * 119.08347 * 270.02528 * 4 3 2 25 25 H 1.08994 * 109.46943 * 60.00075 * 1 2 3 26 26 H 1.09000 * 109.46545 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.46948 * 299.99375 * 1 2 3 28 28 H 1.09006 * 109.46771 * 60.00276 * 3 2 1 29 29 H 1.08998 * 109.47488 * 300.00110 * 3 2 1 30 30 H 1.08002 * 120.39954 * 179.97438 * 6 5 4 31 31 H 1.08005 * 120.82980 * 179.74000 * 7 6 5 32 32 H 1.09001 * 109.46617 * 305.85745 * 10 9 8 33 33 H 1.09001 * 109.46149 * 65.82847 * 10 9 8 34 34 H 1.09003 * 109.50406 * 180.88228 * 11 10 9 35 35 H 1.09000 * 109.53477 * 60.78287 * 11 10 9 36 36 H 1.09010 * 109.52080 * 297.74549 * 12 11 10 37 37 H 1.09002 * 109.56980 * 177.58831 * 12 11 10 38 38 H 0.97001 * 119.99244 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.46447 * 294.18000 * 23 9 8 40 40 H 1.09000 * 109.46472 * 54.14673 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.1516 1.1358 -1.1507 6 6 5.4723 1.0317 -1.1948 7 6 6.1831 0.9707 -0.0122 8 6 5.4758 1.0317 1.1900 9 7 6.1433 0.9790 2.4029 10 6 7.1587 2.0362 2.4910 11 6 7.9715 1.8589 3.7756 12 6 7.0313 1.9264 4.9822 13 6 5.9549 0.8466 4.8417 14 1 6.4242 -0.1373 4.8412 15 6 4.9904 0.9443 5.9954 16 1 3.9437 1.1349 5.8097 17 6 5.4443 0.7906 7.2882 18 7 6.7188 0.5581 7.5144 19 14 4.2489 0.9124 8.7186 20 1 3.2022 -0.1317 8.5791 21 1 4.9815 0.7110 9.9945 22 1 3.6126 2.2542 8.7189 23 6 5.2005 1.0533 3.5262 24 7 4.1504 1.1357 1.1523 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 5.9859 0.9905 -2.1440 31 1 7.2595 0.8815 -0.0173 32 1 7.8232 1.9743 1.6292 33 1 6.6690 3.0099 2.5027 34 1 8.7148 2.6529 3.8484 35 1 8.4731 0.8913 3.7588 36 1 6.5593 2.9082 5.0217 37 1 7.5990 1.7579 5.8973 38 1 7.0380 0.4496 8.4240 39 1 4.7200 2.0316 3.5330 40 1 4.4428 0.2775 3.4163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894486245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = 10.967378 kcal Electronic energy + Delta-G solvation = -21639.384132 eV Core-core repulsion = 18454.534123 eV Total energy + Delta-G solvation = -3184.850009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06437 -38.52255 -37.65897 -34.44272 -33.15109 -32.31566 -30.52462 -30.03751 -28.13750 -25.94678 -25.05611 -24.68201 -22.89841 -21.91436 -21.09681 -18.89108 -17.46476 -17.36856 -16.61343 -16.10868 -15.59698 -15.53314 -15.03902 -14.65486 -14.56639 -14.10028 -13.93703 -13.38817 -12.99743 -12.73539 -12.54233 -12.46736 -12.37424 -11.89919 -11.53207 -10.97526 -10.91889 -10.77175 -10.72845 -10.48669 -10.23677 -9.95657 -9.80507 -9.74657 -9.52577 -9.21119 -9.07320 -8.76487 -8.34233 -8.02764 -6.00680 -4.06365 0.99850 1.32566 3.32307 3.36625 3.39576 3.40205 3.67526 4.07830 4.34391 4.43533 4.48579 4.98074 5.07275 5.22286 5.22544 5.29102 5.30303 5.36782 5.37842 5.51454 5.54930 5.57621 5.74778 5.80170 5.98504 6.30447 6.34466 6.46831 6.49855 6.65471 6.81487 6.89320 6.99516 7.14409 7.29650 7.43138 7.58184 7.72275 7.98673 8.08997 8.32599 8.43017 8.96653 9.58086 11.05793 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.005157 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.613398 B = 5428.668647 C = 6956.470472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.135 3.865 4 C 0.340 3.660 5 N -0.538 5.538 6 C 0.156 3.844 7 C -0.248 4.248 8 C 0.368 3.632 9 N -0.470 5.470 10 C 0.069 3.931 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.051 3.949 14 H 0.035 0.965 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.076 3.924 24 N -0.536 5.536 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.166 0.834 31 H 0.146 0.854 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.096 0.904 38 H 0.261 0.739 39 H 0.040 0.960 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 3.267 -15.251 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.299 6.299 3 C 0.057 3.943 4 C 0.069 3.931 5 N -0.256 5.256 6 C -0.007 4.007 7 C -0.273 4.273 8 C 0.126 3.874 9 N -0.186 5.186 10 C -0.057 4.057 11 C -0.157 4.157 12 C -0.153 4.153 13 C 0.032 3.968 14 H 0.053 0.947 15 C -0.552 4.552 16 H 0.074 0.926 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.049 4.049 24 N -0.257 5.257 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.183 0.817 31 H 0.164 0.836 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.744 2.699 -14.965 15.660 hybrid contribution -0.139 0.681 0.782 1.046 sum -3.883 3.379 -14.183 15.088 Atomic orbital electron populations 1.22764 0.80326 1.03018 1.00142 1.87938 1.20058 1.26437 1.95485 1.20924 0.85465 0.85896 1.02016 1.22382 0.96170 0.91069 0.83443 1.68139 1.10161 1.17339 1.29989 1.22917 0.89323 0.90326 0.98104 1.22401 1.02774 1.09160 0.93006 1.20414 0.88177 0.87120 0.91649 1.58911 1.15571 1.43335 1.00753 1.22250 0.92700 0.90538 1.00173 1.21748 0.98035 1.01426 0.94520 1.21726 0.97642 0.98677 0.97208 1.18763 0.93240 0.95682 0.89089 0.94725 1.21045 0.94347 1.49103 0.90683 0.92627 1.24921 0.95127 0.94968 0.98735 1.69874 1.13349 1.48993 1.20622 0.86652 0.81143 0.78612 0.81561 1.20240 1.21305 1.20324 1.22372 0.93066 1.00799 0.88635 1.68259 1.09413 1.17610 1.30468 0.93937 0.89407 0.93625 0.90542 0.90760 0.81664 0.83599 0.91121 0.94008 0.92443 0.91599 0.94737 0.88618 0.92951 0.94177 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.61 10.69 -35.23 -0.38 -5.99 16 3 C 0.14 1.86 6.37 36.01 0.23 2.09 16 4 C 0.34 5.64 7.27 -157.24 -1.14 4.49 16 5 N -0.54 -8.27 10.33 -10.81 -0.11 -8.38 16 6 C 0.16 2.03 11.29 -17.29 -0.20 1.83 16 7 C -0.25 -3.50 9.27 -39.11 -0.36 -3.86 16 8 C 0.37 6.53 6.40 -154.77 -0.99 5.54 16 9 N -0.47 -8.96 4.68 -173.05 -0.81 -9.77 16 10 C 0.07 1.14 5.25 -3.83 -0.02 1.12 16 11 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 12 C -0.11 -2.60 5.03 -26.61 -0.13 -2.74 16 13 C 0.05 1.27 2.26 -91.70 -0.21 1.06 16 14 H 0.03 0.95 8.14 -51.92 -0.42 0.53 16 15 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.00 11.36 55.43 0.63 -24.37 16 19 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.08 1.69 3.89 -3.83 -0.01 1.67 16 24 N -0.54 -9.99 8.75 -9.97 -0.09 -10.08 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.15 1.69 7.24 -52.48 -0.38 1.31 16 32 H 0.07 0.96 6.76 -51.93 -0.35 0.61 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.10 2.43 6.16 -51.93 -0.32 2.11 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 40 H 0.07 1.76 7.73 -51.93 -0.40 1.35 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -30.87 326.21 -9.20 -40.07 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.07 Total: -0.27 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.28 Total: -2.31 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.38 Total: -52.60 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -5.99 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.87 -9.20 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894486245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.040 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds