Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99989 * 2 1 4 4 C 1.50700 * 109.47343 * 179.97438 * 3 2 1 5 5 N 1.31782 * 119.08449 * 90.00000 * 4 3 2 6 6 C 1.32553 * 121.01443 * 179.97438 * 5 4 3 7 7 C 1.38116 * 119.19480 * 0.25897 * 6 5 4 8 8 C 1.39620 * 118.33302 * 359.52625 * 7 6 5 9 9 N 1.38551 * 120.53118 * 180.21936 * 8 7 6 10 10 C 1.46845 * 110.99564 * 56.04172 * 9 8 7 11 11 C 1.53042 * 109.52314 * 185.83790 * 10 9 8 12 12 C 1.53121 * 109.27756 * 300.82605 * 11 10 9 13 13 C 1.53110 * 109.16415 * 57.65078 * 12 11 10 14 14 H 1.09008 * 109.50476 * 62.28317 * 13 12 11 15 15 C 1.50694 * 109.50727 * 182.40505 * 13 12 11 16 16 H 1.08007 * 120.00344 * 119.80209 * 15 13 12 17 17 C 1.37878 * 120.00086 * 299.80718 * 15 13 12 18 18 N 1.31521 * 119.99611 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00468 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46791 * 59.99420 * 19 17 15 21 21 H 1.48498 * 109.47199 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46802 * 300.00133 * 19 17 15 23 23 C 1.46842 * 111.00014 * 180.25203 * 9 8 7 24 24 N 1.31750 * 119.08347 * 270.02528 * 4 3 2 25 25 H 1.08994 * 109.46943 * 60.00075 * 1 2 3 26 26 H 1.09000 * 109.46545 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.46948 * 299.99375 * 1 2 3 28 28 H 1.09006 * 109.46771 * 60.00276 * 3 2 1 29 29 H 1.08998 * 109.47488 * 300.00110 * 3 2 1 30 30 H 1.08002 * 120.39954 * 179.97438 * 6 5 4 31 31 H 1.08005 * 120.82980 * 179.74000 * 7 6 5 32 32 H 1.09001 * 109.46617 * 305.85745 * 10 9 8 33 33 H 1.09001 * 109.46149 * 65.82847 * 10 9 8 34 34 H 1.09003 * 109.50406 * 180.88228 * 11 10 9 35 35 H 1.09000 * 109.53477 * 60.78287 * 11 10 9 36 36 H 1.09010 * 109.52080 * 297.74549 * 12 11 10 37 37 H 1.09002 * 109.56980 * 177.58831 * 12 11 10 38 38 H 0.97001 * 119.99244 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.46447 * 294.18000 * 23 9 8 40 40 H 1.09000 * 109.46472 * 54.14673 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.1516 1.1358 -1.1507 6 6 5.4723 1.0317 -1.1948 7 6 6.1831 0.9707 -0.0122 8 6 5.4758 1.0317 1.1900 9 7 6.1433 0.9790 2.4029 10 6 7.1587 2.0362 2.4910 11 6 7.9715 1.8589 3.7756 12 6 7.0313 1.9264 4.9822 13 6 5.9549 0.8466 4.8417 14 1 6.4242 -0.1373 4.8412 15 6 4.9904 0.9443 5.9954 16 1 3.9437 1.1349 5.8097 17 6 5.4443 0.7906 7.2882 18 7 6.7188 0.5581 7.5144 19 14 4.2489 0.9124 8.7186 20 1 3.2022 -0.1317 8.5791 21 1 4.9815 0.7110 9.9945 22 1 3.6126 2.2542 8.7189 23 6 5.2005 1.0533 3.5262 24 7 4.1504 1.1357 1.1523 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 5.9859 0.9905 -2.1440 31 1 7.2595 0.8815 -0.0173 32 1 7.8232 1.9743 1.6292 33 1 6.6690 3.0099 2.5027 34 1 8.7148 2.6529 3.8484 35 1 8.4731 0.8913 3.7588 36 1 6.5593 2.9082 5.0217 37 1 7.5990 1.7579 5.8973 38 1 7.0380 0.4496 8.4240 39 1 4.7200 2.0316 3.5330 40 1 4.4428 0.2775 3.4163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894486245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = -9.168688 kcal Electronic energy + Delta-G solvation = -21640.257297 eV Core-core repulsion = 18454.534123 eV Total energy + Delta-G solvation = -3185.723175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29334 -39.95865 -38.72157 -36.11778 -34.52934 -33.85664 -31.97462 -31.75707 -29.17984 -27.15733 -26.69347 -26.11583 -24.22231 -23.41664 -22.55636 -20.59631 -18.98900 -18.58865 -17.95101 -17.61980 -16.74992 -16.59689 -16.44487 -16.19937 -15.93394 -15.43579 -15.34847 -14.81339 -14.60539 -14.35061 -14.16363 -13.70995 -13.44729 -13.28165 -12.87233 -12.75111 -12.58936 -12.40967 -12.07978 -11.95373 -11.83161 -11.70588 -11.42283 -11.09676 -10.91898 -10.76227 -10.69079 -10.40810 -10.26682 -9.42968 -8.11309 -6.24867 -0.15590 0.15909 1.40545 1.41901 1.49642 2.34527 2.37315 2.47498 2.91686 3.16105 3.24234 3.41352 3.80401 4.00162 4.08697 4.12134 4.24400 4.27154 4.34245 4.47682 4.51440 4.53598 4.56408 4.60122 4.60746 4.77913 4.83718 4.90783 4.98176 5.06782 5.20426 5.30522 5.46139 5.60168 5.61625 5.94579 6.05788 6.09395 6.10289 6.20995 6.37382 6.84059 7.14633 7.42656 8.93543 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.005157 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.613398 B = 5428.668647 C = 6956.470472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.136 3.864 4 C 0.322 3.678 5 N -0.543 5.543 6 C 0.163 3.837 7 C -0.236 4.236 8 C 0.338 3.662 9 N -0.480 5.480 10 C 0.071 3.929 11 C -0.110 4.110 12 C -0.107 4.107 13 C 0.051 3.949 14 H -0.002 1.002 15 C -0.539 4.539 16 H 0.046 0.954 17 C 0.019 3.981 18 N -0.912 5.912 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.271 1.271 23 C 0.102 3.898 24 N -0.572 5.572 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.216 0.784 31 H 0.179 0.821 32 H 0.114 0.886 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.065 0.935 38 H 0.262 0.738 39 H 0.027 0.973 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 3.967 -17.394 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C 0.058 3.942 4 C 0.052 3.948 5 N -0.261 5.261 6 C 0.001 3.999 7 C -0.261 4.261 8 C 0.098 3.902 9 N -0.196 5.196 10 C -0.054 4.054 11 C -0.148 4.148 12 C -0.146 4.146 13 C 0.032 3.968 14 H 0.017 0.983 15 C -0.577 4.577 16 H 0.064 0.936 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.205 1.205 22 H -0.196 1.196 23 C -0.025 4.025 24 N -0.294 5.294 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.232 0.768 31 H 0.196 0.804 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.302 3.404 -17.130 17.774 hybrid contribution -0.307 0.436 1.355 1.456 sum -3.609 3.839 -15.776 16.632 Atomic orbital electron populations 1.22989 0.78174 1.04152 1.01464 1.87881 1.22516 1.27106 1.95733 1.21019 0.84292 0.85869 1.03046 1.22857 0.97374 0.91230 0.83304 1.68242 1.11518 1.17088 1.29216 1.23751 0.88519 0.87994 0.99676 1.22717 1.04254 1.07471 0.91613 1.20653 0.88490 0.88939 0.92129 1.58941 1.15361 1.44939 1.00358 1.22348 0.92471 0.89811 1.00785 1.21644 0.97678 1.02378 0.93115 1.21513 0.97500 0.97152 0.98396 1.18662 0.93575 0.94487 0.90047 0.98337 1.21381 0.94495 1.49656 0.92217 0.93551 1.25652 0.96747 0.94536 1.01056 1.70002 1.14697 1.49249 1.21127 0.85691 0.79116 0.78744 0.78584 1.20030 1.20488 1.19621 1.21795 0.92737 0.98949 0.88986 1.68193 1.10405 1.18767 1.32027 0.91718 0.88443 0.93154 0.90765 0.88355 0.76787 0.80413 0.86792 0.94183 0.89290 0.92102 0.95514 0.91607 0.92861 0.95444 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.05 10.69 -148.98 -1.59 -13.64 16 3 C 0.14 3.68 6.37 71.24 0.45 4.13 16 4 C 0.32 10.47 7.27 138.77 1.01 11.48 16 5 N -0.54 -15.41 10.33 -188.11 -1.94 -17.35 16 6 C 0.16 3.61 11.29 84.56 0.95 4.57 16 7 C -0.24 -5.87 9.27 22.57 0.21 -5.66 16 8 C 0.34 11.67 6.40 133.16 0.85 12.52 16 9 N -0.48 -18.18 4.68 -701.42 -3.28 -21.46 16 10 C 0.07 2.20 5.25 86.33 0.45 2.65 16 11 C -0.11 -3.88 6.09 30.65 0.19 -3.69 16 12 C -0.11 -5.01 5.03 30.67 0.15 -4.86 16 13 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 14 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 15 C -0.54 -30.75 8.56 25.60 0.22 -30.53 16 16 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 17 C 0.02 1.09 5.30 84.65 0.45 1.54 16 18 N -0.91 -52.67 11.36 21.45 0.24 -52.42 16 19 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 C 0.10 4.70 3.89 86.33 0.34 5.03 16 24 N -0.57 -21.44 8.75 -185.44 -1.62 -23.06 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.22 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.18 3.20 7.24 -2.91 -0.02 3.18 16 32 H 0.11 2.60 6.76 -2.39 -0.02 2.58 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 3.46 6.16 -2.39 -0.01 3.45 16 38 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.03 1.30 8.12 -2.39 -0.02 1.28 16 40 H 0.05 2.44 7.73 -2.39 -0.02 2.43 16 Total: -1.00 -70.53 326.21 1.35 -69.18 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.02 Total: 10.86 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 6.50 Total: 1.60 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -6.60 Total: -114.30 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.59 Total: -13.64 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -70.53 1.35 -69.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894486245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.013 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds