Wall clock time and date at job start Mon Mar 30 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34946 * 126.03792 * 2 1 4 4 C 1.35311 * 107.74906 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.04390 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46756 * 90.00039 * 5 4 3 7 7 C 1.53500 * 114.20754 * 184.99932 * 6 5 4 8 8 N 1.47060 * 87.99065 * 220.34841 * 7 6 5 9 9 C 1.34777 * 136.05953 * 207.08941 * 8 7 6 10 10 O 1.21274 * 120.00135 * 0.27285 * 9 8 7 11 11 C 1.50706 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.46573 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00344 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46691 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46740 * 119.99592 * 17 15 13 20 20 H 1.48497 * 109.47025 * 239.99950 * 17 15 13 21 21 C 1.47067 * 87.88230 * 27.34173 * 8 7 6 22 22 C 1.39874 * 107.91775 * 0.26767 * 4 3 2 23 23 N 1.30834 * 108.20046 * 359.55463 * 22 4 3 24 24 H 1.09003 * 109.47496 * 89.99727 * 1 2 3 25 25 H 1.08999 * 109.46835 * 209.99472 * 1 2 3 26 26 H 1.08996 * 109.47188 * 329.99637 * 1 2 3 27 27 H 1.08006 * 126.12201 * 0.02562 * 3 2 1 28 28 H 1.09006 * 109.47110 * 330.00643 * 5 4 3 29 29 H 1.08998 * 109.47444 * 210.00169 * 5 4 3 30 30 H 1.09003 * 113.41758 * 318.20501 * 6 5 4 31 31 H 1.09004 * 113.46455 * 105.56615 * 7 6 5 32 32 H 1.08997 * 113.52171 * 335.14326 * 7 6 5 33 33 H 1.09000 * 109.47161 * 299.99737 * 11 9 8 34 34 H 1.09001 * 109.46740 * 59.99879 * 11 9 8 35 35 H 1.09000 * 109.47486 * 299.99934 * 12 11 9 36 36 H 1.09001 * 109.47362 * 60.00657 * 12 11 9 37 37 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 38 38 H 1.09000 * 113.47067 * 87.44293 * 21 8 7 39 39 H 1.09009 * 113.47132 * 217.87779 * 21 8 7 40 40 H 1.08004 * 125.89680 * 179.73697 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0013 6 6 5.1830 1.8428 1.4409 7 6 6.3506 2.8310 1.5688 8 7 6.8776 1.9879 2.6524 9 6 7.6472 2.1773 3.7425 10 8 8.0691 3.2843 4.0021 11 6 7.9777 1.0147 4.6427 12 6 8.8584 1.4977 5.7968 13 6 9.1884 0.3353 6.6974 14 1 8.8084 -0.6495 6.4691 15 6 9.9756 0.5290 7.8127 16 7 10.4388 1.7281 8.0903 17 14 10.3841 -0.9117 8.9294 18 1 9.7466 -2.1441 8.4003 19 1 11.8565 -1.0983 8.9779 20 1 9.8743 -0.6380 10.2970 21 6 6.2007 0.8460 2.0194 22 6 3.5346 -0.7321 -0.0072 23 7 2.2891 -1.1327 -0.0008 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9280 2.1193 0.0004 28 1 4.5439 2.4802 -0.5151 29 1 5.5818 1.0341 -0.5155 30 1 4.3407 2.0587 2.0983 31 1 6.0450 3.8234 1.9004 32 1 6.9940 2.8603 0.6895 33 1 7.0562 0.5904 5.0414 34 1 8.5111 0.2541 4.0727 35 1 9.7799 1.9218 5.3978 36 1 8.3253 2.2585 6.3670 37 1 10.9929 1.8645 8.8747 38 1 6.8041 0.3510 1.2585 39 1 5.7674 0.1471 2.7350 40 1 4.4054 -1.3710 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899007537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:18 Heat of formation + Delta-G solvation = 69.055116 kcal Electronic energy + Delta-G solvation = -20378.730272 eV Core-core repulsion = 17196.399136 eV Total energy + Delta-G solvation = -3182.331136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47954 -40.06304 -37.59545 -34.03925 -33.41093 -32.36624 -31.01160 -29.56963 -27.72108 -26.09210 -25.79574 -24.74803 -21.74233 -21.35213 -20.63816 -20.09127 -18.47033 -17.14438 -16.85849 -15.89355 -15.80434 -15.46341 -15.12595 -14.77827 -14.40428 -14.30048 -13.93915 -13.62194 -13.15191 -12.96194 -12.78959 -12.66266 -12.33298 -12.11750 -12.04682 -11.64573 -11.41580 -11.07955 -10.93441 -10.91869 -10.55291 -10.32636 -9.92194 -9.68390 -9.62208 -9.13781 -8.97665 -8.62704 -8.35474 -8.27473 -5.93309 -3.97508 1.62703 2.25432 2.55037 3.17870 3.32989 3.34747 3.41692 3.45522 4.12408 4.31839 4.49443 4.55508 4.74798 4.77550 4.85424 4.92208 5.01525 5.16208 5.24466 5.28155 5.41558 5.46586 5.51717 5.57571 5.58495 5.70126 5.75478 5.96236 6.16220 6.22314 6.30779 6.37974 6.42088 6.72803 6.95320 7.44437 7.77901 7.89669 8.09278 8.13836 8.41919 8.80776 9.11128 9.65817 11.17780 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.002918 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.873996 B = 9592.634241 C =10383.012407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.380 5.380 3 C 0.054 3.946 4 C -0.231 4.231 5 C -0.028 4.028 6 C -0.119 4.119 7 C 0.103 3.897 8 N -0.657 5.657 9 C 0.539 3.461 10 O -0.534 6.534 11 C -0.121 4.121 12 C 0.036 3.964 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.107 3.893 22 C 0.055 3.945 23 N -0.300 5.300 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.720 -2.129 -21.032 28.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.092 4.092 4 C -0.242 4.242 5 C -0.067 4.067 6 C -0.138 4.138 7 C -0.020 4.020 8 N -0.396 5.396 9 C 0.331 3.669 10 O -0.410 6.410 11 C -0.161 4.161 12 C -0.002 4.002 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.017 4.017 22 C -0.131 4.131 23 N -0.121 5.121 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.189 0.811 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -20.184 -2.397 -20.514 28.879 hybrid contribution 0.737 -0.070 0.651 0.986 sum -19.447 -2.467 -19.863 27.907 Atomic orbital electron populations 1.21836 0.74354 1.04525 1.03226 1.48454 1.06601 1.03946 1.57202 1.22345 0.90957 0.93329 1.02529 1.20045 0.94360 0.93984 1.15859 1.19778 0.93928 0.98024 0.94936 1.23106 0.96599 0.97050 0.97017 1.22926 0.92609 0.96478 0.90031 1.49876 1.52903 1.12471 1.24302 1.21250 0.74889 0.91602 0.79159 1.90672 1.51475 1.26716 1.72102 1.21811 1.02079 0.94751 0.97478 1.18927 0.94308 0.96433 0.90485 1.21254 1.31400 0.94834 1.08830 0.92553 1.25034 0.95990 0.95660 0.97778 1.70011 1.34730 1.21019 1.27125 0.86527 0.78083 0.82688 0.80630 1.19728 1.21012 1.21021 1.23068 0.91486 0.91169 0.95950 1.23847 0.95154 0.94663 0.99469 1.77371 1.01857 1.08292 1.24568 0.90877 0.89334 0.89513 0.81078 0.90750 0.90516 0.88091 0.90944 0.90345 0.90401 0.90393 0.95825 0.95807 0.93018 0.90020 0.90560 0.80003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.47 59.85 0.69 1.14 16 2 N -0.38 -3.21 4.01 -68.16 -0.27 -3.48 16 3 C 0.05 0.40 11.40 -17.23 -0.20 0.20 16 4 C -0.23 -1.85 5.34 -105.05 -0.56 -2.41 16 5 C -0.03 -0.18 5.61 -27.88 -0.16 -0.34 16 6 C -0.12 -1.06 4.01 -89.97 -0.36 -1.42 16 7 C 0.10 1.20 8.19 -8.52 -0.07 1.13 16 8 N -0.66 -10.29 3.69 -185.07 -0.68 -10.97 16 9 C 0.54 11.35 8.08 -10.98 -0.09 11.26 16 10 O -0.53 -13.59 16.76 5.56 0.09 -13.49 16 11 C -0.12 -2.64 5.47 -27.88 -0.15 -2.79 16 12 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 13 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.96 13.29 55.43 0.74 -27.22 16 17 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C 0.11 1.17 8.00 -8.38 -0.07 1.10 16 22 C 0.05 0.50 11.96 -17.36 -0.21 0.30 16 23 N -0.30 -3.25 12.58 30.63 0.39 -2.86 16 24 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.46 7.80 -51.93 -0.40 0.05 16 30 H 0.10 0.98 8.12 -51.93 -0.42 0.55 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 39 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.18 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -38.19 344.92 -7.53 -45.72 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -6.27 Total: -4.95 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.70 Total: -4.96 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.17 Total: -44.54 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -38.19 -7.53 -45.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899007537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.779 kcal (2) G-P(sol) polarization free energy of solvation -38.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds