Wall clock time and date at job start Mon Mar 30 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34946 * 126.03792 * 2 1 4 4 C 1.35311 * 107.74906 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.04390 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46756 * 90.00039 * 5 4 3 7 7 C 1.53500 * 114.20754 * 184.99932 * 6 5 4 8 8 N 1.47060 * 87.99065 * 220.34841 * 7 6 5 9 9 C 1.34777 * 136.05953 * 207.08941 * 8 7 6 10 10 O 1.21274 * 120.00135 * 0.27285 * 9 8 7 11 11 C 1.50706 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.46573 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00344 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46691 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46740 * 119.99592 * 17 15 13 20 20 H 1.48497 * 109.47025 * 239.99950 * 17 15 13 21 21 C 1.47067 * 87.88230 * 27.34173 * 8 7 6 22 22 C 1.39874 * 107.91775 * 0.26767 * 4 3 2 23 23 N 1.30834 * 108.20046 * 359.55463 * 22 4 3 24 24 H 1.09003 * 109.47496 * 89.99727 * 1 2 3 25 25 H 1.08999 * 109.46835 * 209.99472 * 1 2 3 26 26 H 1.08996 * 109.47188 * 329.99637 * 1 2 3 27 27 H 1.08006 * 126.12201 * 0.02562 * 3 2 1 28 28 H 1.09006 * 109.47110 * 330.00643 * 5 4 3 29 29 H 1.08998 * 109.47444 * 210.00169 * 5 4 3 30 30 H 1.09003 * 113.41758 * 318.20501 * 6 5 4 31 31 H 1.09004 * 113.46455 * 105.56615 * 7 6 5 32 32 H 1.08997 * 113.52171 * 335.14326 * 7 6 5 33 33 H 1.09000 * 109.47161 * 299.99737 * 11 9 8 34 34 H 1.09001 * 109.46740 * 59.99879 * 11 9 8 35 35 H 1.09000 * 109.47486 * 299.99934 * 12 11 9 36 36 H 1.09001 * 109.47362 * 60.00657 * 12 11 9 37 37 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 38 38 H 1.09000 * 113.47067 * 87.44293 * 21 8 7 39 39 H 1.09009 * 113.47132 * 217.87779 * 21 8 7 40 40 H 1.08004 * 125.89680 * 179.73697 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 -0.0013 6 6 5.1830 1.8428 1.4409 7 6 6.3506 2.8310 1.5688 8 7 6.8776 1.9879 2.6524 9 6 7.6472 2.1773 3.7425 10 8 8.0691 3.2843 4.0021 11 6 7.9777 1.0147 4.6427 12 6 8.8584 1.4977 5.7968 13 6 9.1884 0.3353 6.6974 14 1 8.8084 -0.6495 6.4691 15 6 9.9756 0.5290 7.8127 16 7 10.4388 1.7281 8.0903 17 14 10.3841 -0.9117 8.9294 18 1 9.7466 -2.1441 8.4003 19 1 11.8565 -1.0983 8.9779 20 1 9.8743 -0.6380 10.2970 21 6 6.2007 0.8460 2.0194 22 6 3.5346 -0.7321 -0.0072 23 7 2.2891 -1.1327 -0.0008 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9280 2.1193 0.0004 28 1 4.5439 2.4802 -0.5151 29 1 5.5818 1.0341 -0.5155 30 1 4.3407 2.0587 2.0983 31 1 6.0450 3.8234 1.9004 32 1 6.9940 2.8603 0.6895 33 1 7.0562 0.5904 5.0414 34 1 8.5111 0.2541 4.0727 35 1 9.7799 1.9218 5.3978 36 1 8.3253 2.2585 6.3670 37 1 10.9929 1.8645 8.8747 38 1 6.8041 0.3510 1.2585 39 1 5.7674 0.1471 2.7350 40 1 4.4054 -1.3710 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899007537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:18 Heat of formation + Delta-G solvation = 42.828415 kcal Electronic energy + Delta-G solvation = -20379.867547 eV Core-core repulsion = 17196.399136 eV Total energy + Delta-G solvation = -3183.468411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.07040 -41.23269 -39.07874 -35.58810 -34.64047 -33.26420 -32.83054 -30.56268 -28.61981 -27.43512 -26.80090 -25.93176 -23.43990 -21.94026 -21.72673 -20.77729 -19.81403 -18.75208 -17.69849 -17.58280 -16.81489 -16.62692 -16.37423 -16.19608 -15.75378 -15.20404 -14.78397 -14.54031 -14.30441 -13.95170 -13.85931 -13.56997 -13.44565 -13.32486 -13.24228 -13.01721 -12.85364 -12.45896 -12.37113 -12.11100 -11.97920 -11.69518 -11.63221 -11.30525 -11.07546 -10.68762 -10.59719 -10.27418 -9.66600 -9.14000 -8.19691 -6.34320 1.07822 1.41003 1.43041 1.56492 1.66984 1.80747 1.88780 2.05404 2.42145 3.12910 3.37274 3.75401 3.82394 4.08335 4.16807 4.18747 4.40853 4.42486 4.47822 4.48065 4.52653 4.60705 4.70166 4.71202 4.73428 4.82272 4.84961 4.92189 5.05296 5.13101 5.20526 5.40308 5.46921 5.55482 5.58929 5.82148 5.85436 6.15058 6.26639 6.74868 6.85624 6.86445 7.24663 7.36087 8.93454 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023949 B = 0.002918 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.873996 B = 9592.634241 C =10383.012407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.388 5.388 3 C 0.056 3.944 4 C -0.244 4.244 5 C -0.015 4.015 6 C -0.091 4.091 7 C 0.096 3.904 8 N -0.660 5.660 9 C 0.534 3.466 10 O -0.597 6.597 11 C -0.109 4.109 12 C 0.043 3.957 13 C -0.543 4.543 14 H 0.075 0.925 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.977 3.023 18 H -0.253 1.253 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.100 3.900 22 C 0.044 3.956 23 N -0.346 5.346 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.202 0.798 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.099 0.901 35 H -0.018 1.018 36 H -0.019 1.019 37 H 0.264 0.736 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.133 -3.805 -22.544 31.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.170 5.170 3 C -0.091 4.091 4 C -0.255 4.255 5 C -0.054 4.054 6 C -0.110 4.110 7 C -0.026 4.026 8 N -0.396 5.396 9 C 0.325 3.675 10 O -0.477 6.477 11 C -0.149 4.149 12 C 0.005 3.995 13 C -0.580 4.580 14 H 0.093 0.907 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.800 3.200 18 H -0.176 1.176 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.021 4.021 22 C -0.141 4.141 23 N -0.168 5.168 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.129 0.871 27 H 0.219 0.781 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.001 0.999 36 H 0.000 1.000 37 H 0.072 0.928 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -21.664 -4.124 -22.098 31.219 hybrid contribution 1.068 0.487 1.019 1.554 sum -20.596 -3.636 -21.079 29.694 Atomic orbital electron populations 1.22111 0.72666 1.05537 1.04342 1.48788 1.07773 1.03707 1.56734 1.22922 0.90871 0.94365 1.00923 1.20207 0.95101 0.93592 1.16596 1.19718 0.93828 0.98879 0.92976 1.22913 0.95041 0.94445 0.98618 1.23303 0.93880 0.96313 0.89099 1.49858 1.50377 1.15955 1.23373 1.20924 0.75538 0.90255 0.80739 1.90637 1.54478 1.28496 1.74139 1.21531 1.01780 0.95548 0.96033 1.18697 0.93208 0.95315 0.92252 1.21709 1.31489 0.95634 1.09207 0.90719 1.26177 0.95632 0.98977 0.99757 1.70189 1.35600 1.23977 1.28026 0.85228 0.77975 0.78872 0.77893 1.17635 1.20418 1.20490 1.23513 0.91798 0.90584 0.96218 1.24213 0.95212 0.95685 0.98998 1.77304 1.02938 1.10142 1.26438 0.89704 0.89810 0.87065 0.78116 0.88828 0.89161 0.88614 0.91950 0.87887 0.88596 0.88261 0.99930 1.00041 0.92763 0.87136 0.90390 0.78720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 11.47 127.77 1.47 2.13 16 2 N -0.39 -5.81 4.01 -369.57 -1.48 -7.29 16 3 C 0.06 0.66 11.40 83.54 0.95 1.61 16 4 C -0.24 -3.17 5.34 -20.14 -0.11 -3.28 16 5 C -0.02 -0.14 5.61 29.85 0.17 0.03 16 6 C -0.09 -1.35 4.01 -10.37 -0.04 -1.39 16 7 C 0.10 2.03 8.19 83.17 0.68 2.71 16 8 N -0.66 -19.86 3.69 -857.83 -3.16 -23.02 16 9 C 0.53 22.91 8.08 87.66 0.71 23.62 16 10 O -0.60 -31.95 16.76 -3.01 -0.05 -32.00 16 11 C -0.11 -4.80 5.47 29.85 0.16 -4.64 16 12 C 0.04 2.52 4.26 29.85 0.13 2.64 16 13 C -0.54 -32.00 9.11 25.60 0.23 -31.76 16 14 H 0.07 4.03 7.74 -2.91 -0.02 4.01 16 15 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 16 N -0.94 -60.85 13.29 21.45 0.28 -60.57 16 17 Si 0.98 45.27 29.54 68.60 2.03 47.30 16 18 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 C 0.10 1.90 8.00 83.26 0.67 2.57 16 22 C 0.04 0.72 11.96 85.24 1.02 1.74 16 23 N -0.35 -7.10 12.58 -57.02 -0.72 -7.81 16 24 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 26 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.20 0.95 8.06 -2.91 -0.02 0.92 16 28 H 0.09 0.59 8.14 -2.38 -0.02 0.58 16 29 H 0.09 0.66 7.80 -2.39 -0.02 0.64 16 30 H 0.10 1.59 8.12 -2.39 -0.02 1.57 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.10 1.73 8.10 -2.39 -0.02 1.72 16 33 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 34 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 35 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 36 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 37 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 38 H 0.11 1.55 7.87 -2.39 -0.02 1.53 16 39 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -88.07 344.92 4.41 -83.66 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.01 Total: 3.79 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 6.50 Total: -4.04 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -5.08 Total: -98.70 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.05 Total: -32.00 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -88.07 4.41 -83.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899007537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.489 kcal (2) G-P(sol) polarization free energy of solvation -88.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds