Wall clock time and date at job start Mon Mar 30 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99890 * 2 1 4 4 C 1.46898 * 111.00028 * 123.95213 * 2 1 3 5 5 C 1.50698 * 109.47086 * 75.86434 * 4 2 1 6 6 N 1.29324 * 120.00328 * 5.50167 * 5 4 2 7 7 N 1.37007 * 120.00002 * 185.50517 * 5 4 2 8 8 O 1.41599 * 120.00025 * 179.97438 * 7 5 4 9 9 C 1.42901 * 114.00105 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46915 * 180.02562 * 9 8 7 11 11 C 1.38626 * 119.74739 * 269.72113 * 10 9 8 12 12 C 1.37623 * 120.24688 * 179.72277 * 11 10 9 13 13 C 1.40722 * 119.74402 * 0.57508 * 12 11 10 14 14 C 1.41394 * 120.24540 * 179.68078 * 13 12 11 15 15 H 1.07995 * 120.00255 * 206.49184 * 14 13 12 16 16 C 1.39947 * 119.99876 * 26.48853 * 14 13 12 17 17 N 1.30829 * 120.00179 * 12.31391 * 16 14 13 18 18 Si 1.86794 * 119.99952 * 192.31354 * 16 14 13 19 19 H 1.48498 * 109.47481 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47215 * 120.00229 * 18 16 14 21 21 H 1.48503 * 109.47214 * 239.99866 * 18 16 14 22 22 C 1.40711 * 119.51075 * 359.69989 * 13 12 11 23 23 C 1.37622 * 119.74572 * 0.02562 * 22 13 12 24 24 H 1.09003 * 109.47203 * 300.58879 * 1 2 3 25 25 H 1.08998 * 109.46834 * 60.58358 * 1 2 3 26 26 H 1.09003 * 109.47139 * 180.58623 * 1 2 3 27 27 H 1.09005 * 109.46962 * 183.95360 * 3 2 1 28 28 H 1.08996 * 109.47015 * 303.95132 * 3 2 1 29 29 H 1.09006 * 109.47031 * 63.95349 * 3 2 1 30 30 H 1.09003 * 109.47319 * 315.86353 * 4 2 1 31 31 H 1.08998 * 109.47529 * 195.86520 * 4 2 1 32 32 H 0.97002 * 119.99092 * 1.22295 * 6 5 4 33 33 H 0.96996 * 119.99955 * 359.97438 * 7 5 4 34 34 H 1.09005 * 109.46402 * 299.99320 * 9 8 7 35 35 H 1.08994 * 109.46980 * 59.99511 * 9 8 7 36 36 H 1.08001 * 119.87981 * 359.97438 * 11 10 9 37 37 H 1.08003 * 120.13002 * 180.27675 * 12 11 10 38 38 H 0.97000 * 119.99975 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.13215 * 179.97438 * 22 13 12 40 40 H 1.08004 * 119.87890 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8515 -2.2402 0.8602 6 7 1.4256 -2.6428 -0.2926 7 7 2.1718 -3.1540 1.8295 8 8 2.0361 -4.5392 1.5690 9 6 2.4045 -5.3760 2.6673 10 6 2.2224 -6.8212 2.2809 11 6 1.0086 -7.4483 2.5158 12 6 0.8292 -8.7661 2.1618 13 6 1.8876 -9.4804 1.5704 14 6 1.7170 -10.8367 1.2088 15 1 2.5715 -11.4958 1.1663 16 6 0.4409 -11.3249 0.9060 17 7 -0.5511 -10.4924 0.7208 18 14 0.1541 -13.1654 0.7662 19 1 1.4281 -13.8856 1.0178 20 1 -0.8589 -13.5860 1.7673 21 1 -0.3351 -13.4879 -0.5984 22 6 3.1170 -8.8352 1.3420 23 6 3.2721 -7.5152 1.6989 24 1 -0.3634 0.5230 0.8847 25 1 -0.3633 0.5047 -0.8952 26 1 -0.3633 -1.0276 0.0105 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.4371 -0.5094 2.0379 31 1 3.0485 -0.5245 1.2821 32 1 1.2156 -1.9964 -0.9847 33 1 2.4916 -2.8521 2.6940 34 1 3.4486 -5.1980 2.9253 35 1 1.7738 -5.1468 3.5262 36 1 0.1994 -6.8995 2.9746 37 1 -0.1187 -9.2515 2.3416 38 1 -1.4357 -10.8308 0.5113 39 1 3.9362 -9.3741 0.8892 40 1 4.2149 -7.0179 1.5250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904437442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:50 Heat of formation + Delta-G solvation = 63.506765 kcal Electronic energy + Delta-G solvation = -20353.119004 eV Core-core repulsion = 17170.547274 eV Total energy + Delta-G solvation = -3182.571731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.73299 -37.86617 -36.77682 -34.68233 -33.61963 -30.94650 -29.79747 -29.26369 -28.03135 -27.78287 -26.55472 -23.56817 -22.67821 -21.00674 -20.39661 -19.76457 -17.70001 -17.30767 -16.11595 -15.83636 -15.52703 -15.43384 -15.19151 -14.76344 -14.23200 -13.76823 -13.61587 -13.39106 -12.95202 -12.73242 -12.57681 -12.27421 -12.15791 -12.00912 -11.93808 -11.63981 -11.41352 -11.09356 -10.92854 -10.67823 -10.35210 -9.85707 -9.64436 -9.37821 -9.20812 -8.99291 -8.68974 -7.68799 -7.47478 -7.33526 -6.73318 -4.39779 2.21421 2.79821 2.94209 3.07233 3.09328 3.13124 3.19021 3.60988 3.92859 4.57055 4.58140 4.75018 4.95008 4.98925 5.07125 5.13916 5.24693 5.28422 5.47877 5.64776 5.66291 5.68999 5.74163 6.06167 6.33533 6.39124 6.41148 6.48644 6.56177 6.94633 7.06346 7.26497 7.35978 7.56198 7.60448 7.81002 8.00675 8.04401 8.09035 8.28083 8.63134 8.87643 8.95080 9.00325 10.19143 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034657 B = 0.002846 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.713702 B = 9837.694041 C =10256.786835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.546 5.546 3 C 0.029 3.971 4 C 0.055 3.945 5 C 0.415 3.585 6 N -0.737 5.737 7 N -0.602 5.602 8 O -0.126 6.126 9 C 0.100 3.900 10 C -0.220 4.220 11 C -0.078 4.078 12 C -0.166 4.166 13 C 0.116 3.884 14 C -0.456 4.456 15 H 0.079 0.921 16 C 0.071 3.929 17 N -0.792 5.792 18 Si 0.912 3.088 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.227 4.227 23 C -0.066 4.066 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.350 0.650 33 H 0.405 0.595 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.281 0.719 39 H 0.094 0.906 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 18.253 3.565 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.270 5.270 3 C -0.119 4.119 4 C -0.078 4.078 5 C 0.129 3.871 6 N -0.372 5.372 7 N -0.291 5.291 8 O -0.129 6.129 9 C 0.023 3.977 10 C -0.223 4.223 11 C -0.096 4.096 12 C -0.185 4.185 13 C 0.113 3.887 14 C -0.486 4.486 15 H 0.097 0.903 16 C -0.146 4.146 17 N -0.417 5.417 18 Si 0.737 3.263 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.247 4.247 23 C -0.084 4.084 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.170 0.830 33 H 0.244 0.756 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.993 16.902 2.385 17.186 hybrid contribution -0.283 0.687 1.103 1.330 sum 1.709 17.589 3.488 18.013 Atomic orbital electron populations 1.22603 0.86423 1.03332 1.01120 1.61615 1.08758 1.14429 1.42232 1.22378 1.00937 0.87670 1.00917 1.21652 1.01885 0.91415 0.92864 1.20627 0.91996 0.85070 0.89368 1.68911 1.23325 1.42514 1.02400 1.45230 1.74104 0.95346 1.14426 1.90876 1.89024 0.98435 1.34587 1.21573 0.97824 0.89120 0.89134 1.18540 0.96652 0.91146 1.15989 1.20545 0.94447 0.95363 0.99282 1.21382 1.00742 0.93797 1.02624 1.17704 0.90773 0.92963 0.87230 1.19687 0.93650 0.95124 1.40129 0.90289 1.25965 0.95656 1.00313 0.92689 1.69821 1.02015 1.36393 1.33476 0.86196 0.79396 0.82176 0.78566 1.18412 1.19723 1.19914 1.20988 0.99183 0.94587 1.09905 1.20379 0.96369 0.94562 0.97137 0.95164 0.90721 0.90422 0.90993 0.90808 0.95254 0.92237 0.88497 0.83002 0.75589 0.93600 0.93570 0.89370 0.85880 0.90829 0.88748 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.85 60.06 0.53 0.65 16 2 N -0.55 -5.06 3.91 -252.72 -0.99 -6.04 16 3 C 0.03 0.19 9.51 60.07 0.57 0.76 16 4 C 0.06 0.52 5.51 -4.98 -0.03 0.49 16 5 C 0.41 5.98 7.60 -154.56 -1.18 4.80 16 6 N -0.74 -13.06 12.85 32.89 0.42 -12.63 16 7 N -0.60 -8.98 6.49 32.83 0.21 -8.77 16 8 O -0.13 -2.56 11.09 -11.47 -0.13 -2.69 16 9 C 0.10 1.85 6.34 36.01 0.23 2.08 16 10 C -0.22 -5.03 5.53 -104.33 -0.58 -5.61 16 11 C -0.08 -1.88 9.67 -39.66 -0.38 -2.27 16 12 C -0.17 -4.42 8.68 -38.87 -0.34 -4.76 16 13 C 0.12 3.16 5.57 -106.82 -0.60 2.56 16 14 C -0.46 -12.24 9.07 -37.74 -0.34 -12.58 16 15 H 0.08 2.02 7.88 -52.49 -0.41 1.61 16 16 C 0.07 1.82 5.24 -17.34 -0.09 1.72 16 17 N -0.79 -20.88 10.77 55.55 0.60 -20.28 16 18 Si 0.91 18.83 29.58 -169.99 -5.03 13.80 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 23 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 24 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.87 6.64 -51.93 -0.35 0.52 16 27 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.47 8.00 -51.93 -0.42 0.05 16 31 H 0.10 0.74 7.89 -51.93 -0.41 0.33 16 32 H 0.35 5.56 6.58 -40.82 -0.27 5.29 16 33 H 0.40 4.33 8.57 -40.82 -0.35 3.98 16 34 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.12 3.36 6.10 -52.48 -0.32 3.04 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -31.92 337.97 -8.65 -40.57 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.87 Total: 11.15 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -2.96 Total: -20.19 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.25 Total: -47.73 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: -0.13 Total: -2.69 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.92 -8.65 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904437442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.075 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds