Wall clock time and date at job start Mon Mar 30 2020 01:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39169 * 119.99838 * 179.97438 * 2 1 3 5 5 C 1.39505 * 120.86161 * 179.72094 * 4 2 1 6 6 C 1.37876 * 119.06570 * 179.75218 * 5 4 2 7 7 N 1.32010 * 120.84223 * 0.53775 * 6 5 4 8 8 C 1.31982 * 121.90992 * 359.71845 * 7 6 5 9 9 C 1.50704 * 119.57817 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.46993 * 275.01612 * 9 8 7 11 11 C 1.34773 * 119.99662 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00514 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99599 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.46849 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46849 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00182 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99943 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00102 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00204 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46935 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47249 * 119.99972 * 19 17 15 22 22 H 1.48497 * 109.47403 * 240.00227 * 19 17 15 23 23 C 1.37920 * 120.84377 * 0.02562 * 8 7 6 24 24 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 27 27 H 1.09002 * 109.46782 * 359.97438 * 3 2 1 28 28 H 1.09008 * 109.47182 * 119.99477 * 3 2 1 29 29 H 1.08994 * 109.47256 * 239.99753 * 3 2 1 30 30 H 1.07993 * 120.46384 * 0.02562 * 5 4 2 31 31 H 1.07991 * 119.57920 * 180.25441 * 6 5 4 32 32 H 1.08997 * 109.47139 * 35.01817 * 9 8 7 33 33 H 1.09003 * 109.46840 * 155.02121 * 9 8 7 34 34 H 0.96998 * 119.99965 * 0.02562 * 10 9 8 35 35 H 1.08997 * 109.46996 * 299.99734 * 13 11 10 36 36 H 1.08996 * 109.47551 * 59.99925 * 13 11 10 37 37 H 1.08997 * 109.46958 * 299.99578 * 14 13 11 38 38 H 1.08996 * 109.47252 * 59.99562 * 14 13 11 39 39 H 0.97002 * 120.00535 * 180.02562 * 18 17 15 40 40 H 1.07993 * 120.46500 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1608 -1.2053 0.0005 5 6 3.5557 -1.2263 -0.0053 6 6 4.2073 -2.4413 0.0007 7 7 3.5283 -3.5734 0.0011 8 6 2.2087 -3.5955 0.0014 9 6 1.4868 -4.9183 0.0025 10 7 1.3585 -5.4058 -1.3731 11 6 0.7431 -6.5796 -1.6174 12 8 0.2950 -7.2322 -0.6987 13 6 0.6118 -7.0813 -3.0324 14 6 -0.1213 -8.4243 -3.0313 15 6 -0.2521 -8.9263 -4.4463 16 1 0.1472 -8.3454 -5.2645 17 6 -0.8816 -10.1272 -4.6963 18 7 -1.3683 -10.8344 -3.7000 19 14 -1.0444 -10.7492 -6.4501 20 1 -0.4193 -9.7752 -7.3807 21 1 -0.3609 -12.0615 -6.5754 22 1 -2.4818 -10.9054 -6.7886 23 6 1.4819 -2.4233 0.0008 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 1.4892 2.0972 -0.0005 28 1 2.8242 1.3265 0.8901 29 1 2.8242 1.3264 -0.8899 30 1 4.1172 -0.3038 -0.0099 31 1 5.2869 -2.4673 0.0004 32 1 2.0516 -5.6400 0.5926 33 1 0.4951 -4.7907 0.4366 34 1 1.7172 -4.8840 -2.1080 35 1 0.0467 -6.3599 -3.6227 36 1 1.6035 -7.2086 -3.4664 37 1 0.4434 -9.1459 -2.4410 38 1 -1.1130 -8.2966 -2.5975 39 1 -1.8109 -11.6795 -3.8758 40 1 0.4023 -2.4485 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927698361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:53 Heat of formation + Delta-G solvation = -2.790491 kcal Electronic energy + Delta-G solvation = -20317.195800 eV Core-core repulsion = 17131.749205 eV Total energy + Delta-G solvation = -3185.446595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.62311 -38.95890 -37.35761 -34.63431 -33.38269 -31.77096 -31.44559 -30.78972 -28.90648 -26.93655 -25.70188 -24.93877 -22.88302 -21.60675 -20.83052 -19.58527 -17.72106 -16.98156 -16.78094 -15.88846 -15.68300 -15.45789 -15.39969 -15.07672 -14.63089 -14.38791 -14.37388 -13.64380 -13.41019 -13.13377 -13.06608 -12.87431 -12.66533 -12.37404 -12.12582 -11.82466 -11.52181 -11.09522 -10.90542 -10.86080 -10.54062 -9.89409 -9.61209 -9.57387 -9.41718 -9.07068 -8.86681 -8.70184 -8.27390 -8.03432 -5.91491 -3.95481 0.92068 1.30928 2.59094 3.34642 3.35964 3.42205 3.44941 3.47721 3.96676 4.19103 4.39844 4.46429 4.52034 4.76217 4.78243 4.84361 5.02001 5.10102 5.14031 5.18122 5.27874 5.41697 5.43430 5.51789 5.62151 5.71370 5.84989 5.99081 6.30618 6.33152 6.39893 6.69782 6.76493 6.92411 6.96763 7.80282 7.93081 7.95861 7.99798 8.13004 8.44366 8.86052 9.13616 9.67757 11.19549 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.002756 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.754546 B =10157.736808 C =10394.479649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.094 3.906 4 C 0.246 3.754 5 C -0.248 4.248 6 C 0.140 3.860 7 N -0.510 5.510 8 C 0.154 3.846 9 C 0.171 3.829 10 N -0.736 5.736 11 C 0.511 3.489 12 O -0.535 6.535 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.231 4.231 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.398 0.602 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 27.467 8.000 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.340 5.340 3 C -0.049 4.049 4 C 0.136 3.864 5 C -0.273 4.273 6 C -0.017 4.017 7 N -0.223 5.223 8 C 0.017 3.983 9 C 0.047 3.953 10 N -0.390 5.390 11 C 0.300 3.700 12 O -0.410 6.410 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.257 4.257 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.172 0.828 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.042 26.200 8.726 28.762 hybrid contribution -0.359 0.915 -1.233 1.577 sum 7.683 27.116 7.493 29.162 Atomic orbital electron populations 1.21770 0.78847 1.03225 1.01648 1.46293 1.05454 1.03114 1.79107 1.21665 0.97178 0.84609 1.01481 1.18022 0.91394 0.85973 0.91030 1.21629 0.92617 1.00304 1.12793 1.22491 1.00054 0.86832 0.92349 1.67590 1.08188 1.30374 1.16148 1.20988 0.89671 0.94235 0.93397 1.20013 0.99005 0.90510 0.85782 1.46123 1.61594 1.23690 1.07601 1.21558 0.76023 0.79218 0.93208 1.90668 1.47355 1.56123 1.46855 1.21859 1.02867 1.02024 0.90124 1.18910 0.95750 0.88706 0.96760 1.21272 1.37166 1.05153 0.92744 0.92572 1.25029 0.95630 0.96858 0.96945 1.70010 1.38270 1.13967 1.30630 0.86540 0.77682 0.78771 0.84991 1.19770 1.21035 1.21062 1.21514 1.01207 0.91166 1.11767 0.92919 0.90832 0.91141 0.90577 0.92512 0.92478 0.85173 0.82788 0.89943 0.90372 0.76895 0.90316 0.90193 0.95747 0.95797 0.93042 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.19 59.85 0.61 1.11 16 2 N -0.63 -4.61 3.39 -187.35 -0.64 -5.24 16 3 C 0.09 0.44 9.44 59.85 0.56 1.00 16 4 C 0.25 2.35 6.58 -83.61 -0.55 1.80 16 5 C -0.25 -2.19 9.38 -39.24 -0.37 -2.56 16 6 C 0.14 1.40 11.17 -17.61 -0.20 1.21 16 7 N -0.51 -6.58 10.27 -9.57 -0.10 -6.68 16 8 C 0.15 1.92 6.14 -82.64 -0.51 1.42 16 9 C 0.17 2.43 5.98 -5.19 -0.03 2.40 16 10 N -0.74 -11.41 5.55 -61.47 -0.34 -11.75 16 11 C 0.51 10.30 7.83 -10.98 -0.09 10.22 16 12 O -0.53 -13.01 15.98 5.56 0.09 -12.92 16 13 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 14 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 15 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.85 13.29 55.43 0.74 -27.11 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 C -0.23 -2.46 8.87 -39.25 -0.35 -2.81 16 24 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.45 6.26 -51.93 -0.33 0.13 16 26 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 27 H 0.08 0.23 7.79 -51.93 -0.40 -0.18 16 28 H 0.06 0.24 8.00 -51.92 -0.42 -0.17 16 29 H 0.06 0.25 7.98 -51.93 -0.41 -0.16 16 30 H 0.13 0.84 6.89 -52.49 -0.36 0.47 16 31 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.40 5.30 8.46 -40.82 -0.35 4.95 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.13 1.28 6.28 -52.49 -0.33 0.95 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -36.08 339.90 -7.67 -43.75 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.92 Total: -0.02 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.60 Total: -2.12 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.34 Total: -50.78 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.08 -7.67 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927698361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.960 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds