Wall clock time and date at job start Mon Mar 30 2020 01:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39169 * 119.99838 * 179.97438 * 2 1 3 5 5 C 1.39505 * 120.86161 * 179.72094 * 4 2 1 6 6 C 1.37876 * 119.06570 * 179.75218 * 5 4 2 7 7 N 1.32010 * 120.84223 * 0.53775 * 6 5 4 8 8 C 1.31982 * 121.90992 * 359.71845 * 7 6 5 9 9 C 1.50704 * 119.57817 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.46993 * 275.01612 * 9 8 7 11 11 C 1.34773 * 119.99662 * 179.97438 * 10 9 8 12 12 O 1.21275 * 120.00514 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99599 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.46849 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46849 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00182 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99943 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00102 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00204 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46935 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47249 * 119.99972 * 19 17 15 22 22 H 1.48497 * 109.47403 * 240.00227 * 19 17 15 23 23 C 1.37920 * 120.84377 * 0.02562 * 8 7 6 24 24 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 27 27 H 1.09002 * 109.46782 * 359.97438 * 3 2 1 28 28 H 1.09008 * 109.47182 * 119.99477 * 3 2 1 29 29 H 1.08994 * 109.47256 * 239.99753 * 3 2 1 30 30 H 1.07993 * 120.46384 * 0.02562 * 5 4 2 31 31 H 1.07991 * 119.57920 * 180.25441 * 6 5 4 32 32 H 1.08997 * 109.47139 * 35.01817 * 9 8 7 33 33 H 1.09003 * 109.46840 * 155.02121 * 9 8 7 34 34 H 0.96998 * 119.99965 * 0.02562 * 10 9 8 35 35 H 1.08997 * 109.46996 * 299.99734 * 13 11 10 36 36 H 1.08996 * 109.47551 * 59.99925 * 13 11 10 37 37 H 1.08997 * 109.46958 * 299.99578 * 14 13 11 38 38 H 1.08996 * 109.47252 * 59.99562 * 14 13 11 39 39 H 0.97002 * 120.00535 * 180.02562 * 18 17 15 40 40 H 1.07993 * 120.46500 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1608 -1.2053 0.0005 5 6 3.5557 -1.2263 -0.0053 6 6 4.2073 -2.4413 0.0007 7 7 3.5283 -3.5734 0.0011 8 6 2.2087 -3.5955 0.0014 9 6 1.4868 -4.9183 0.0025 10 7 1.3585 -5.4058 -1.3731 11 6 0.7431 -6.5796 -1.6174 12 8 0.2950 -7.2322 -0.6987 13 6 0.6118 -7.0813 -3.0324 14 6 -0.1213 -8.4243 -3.0313 15 6 -0.2521 -8.9263 -4.4463 16 1 0.1472 -8.3454 -5.2645 17 6 -0.8816 -10.1272 -4.6963 18 7 -1.3683 -10.8344 -3.7000 19 14 -1.0444 -10.7492 -6.4501 20 1 -0.4193 -9.7752 -7.3807 21 1 -0.3609 -12.0615 -6.5754 22 1 -2.4818 -10.9054 -6.7886 23 6 1.4819 -2.4233 0.0008 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 1.4892 2.0972 -0.0005 28 1 2.8242 1.3265 0.8901 29 1 2.8242 1.3264 -0.8899 30 1 4.1172 -0.3038 -0.0099 31 1 5.2869 -2.4673 0.0004 32 1 2.0516 -5.6400 0.5926 33 1 0.4951 -4.7907 0.4366 34 1 1.7172 -4.8840 -2.1080 35 1 0.0467 -6.3599 -3.6227 36 1 1.6035 -7.2086 -3.4664 37 1 0.4434 -9.1459 -2.4410 38 1 -1.1130 -8.2966 -2.5975 39 1 -1.8109 -11.6795 -3.8758 40 1 0.4023 -2.4485 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927698361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:53 Heat of formation + Delta-G solvation = -28.697982 kcal Electronic energy + Delta-G solvation = -20318.319233 eV Core-core repulsion = 17131.749205 eV Total energy + Delta-G solvation = -3186.570028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44553 -40.51011 -38.01838 -35.98821 -35.50362 -33.20100 -32.39246 -32.12797 -29.51124 -28.29341 -26.91829 -26.04114 -23.79274 -23.35591 -21.70656 -21.18604 -18.88341 -18.34937 -17.74524 -17.42646 -17.00947 -16.52581 -16.40888 -16.27873 -16.06054 -15.44867 -15.10651 -14.80831 -14.56455 -14.46647 -14.15028 -13.97011 -13.54173 -13.48161 -13.21623 -13.10491 -12.91791 -12.82535 -12.43687 -12.20294 -11.91226 -11.62659 -11.52632 -11.27236 -10.86184 -10.56577 -10.37234 -10.11292 -10.02022 -8.63061 -8.16595 -6.30517 0.11489 0.55278 1.42996 1.44719 1.58038 1.71626 2.06982 2.25684 2.45734 3.00337 3.16296 3.26933 3.70401 3.96220 4.04938 4.15847 4.26001 4.31098 4.44569 4.48909 4.51068 4.56254 4.59494 4.68485 4.74029 4.82268 4.86867 4.89842 5.03528 5.04202 5.09066 5.38948 5.52482 5.65361 5.66359 5.87330 6.17124 6.19394 6.30375 6.56432 6.87942 7.18553 7.31729 7.39566 8.96401 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.002756 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.754546 B =10157.736808 C =10394.479649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.629 5.629 3 C 0.087 3.913 4 C 0.241 3.759 5 C -0.241 4.241 6 C 0.131 3.869 7 N -0.544 5.544 8 C 0.140 3.860 9 C 0.174 3.826 10 N -0.711 5.711 11 C 0.514 3.486 12 O -0.586 6.586 13 C -0.118 4.118 14 C 0.042 3.958 15 C -0.542 4.542 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.279 1.279 23 C -0.235 4.235 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.158 0.842 31 H 0.178 0.822 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.412 0.588 35 H 0.106 0.894 36 H 0.102 0.898 37 H -0.018 1.018 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.094 30.432 6.265 32.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.339 5.339 3 C -0.055 4.055 4 C 0.128 3.872 5 C -0.266 4.266 6 C -0.025 4.025 7 N -0.258 5.258 8 C 0.004 3.996 9 C 0.050 3.950 10 N -0.364 5.364 11 C 0.303 3.697 12 O -0.466 6.466 13 C -0.157 4.157 14 C 0.004 3.996 15 C -0.579 4.579 16 H 0.093 0.907 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.799 3.201 20 H -0.177 1.177 21 H -0.207 1.207 22 H -0.205 1.205 23 C -0.261 4.261 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.175 0.825 31 H 0.195 0.805 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.248 0.752 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.001 0.999 38 H 0.004 0.996 39 H 0.072 0.928 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.019 29.258 6.975 31.401 hybrid contribution -0.629 0.144 -0.615 0.892 sum 8.390 29.402 6.360 31.230 Atomic orbital electron populations 1.21907 0.78107 1.03919 1.02125 1.46577 1.06195 1.03201 1.77882 1.21879 0.97781 0.83854 1.02004 1.18183 0.91947 0.86458 0.90586 1.21893 0.92497 1.00931 1.11256 1.22914 1.01147 0.86544 0.91909 1.67508 1.08434 1.32166 1.17642 1.20621 0.89893 0.93524 0.95576 1.19995 0.99297 0.91401 0.84298 1.45825 1.59531 1.22025 1.09034 1.21338 0.76035 0.80073 0.92273 1.90653 1.49933 1.57979 1.48007 1.21633 1.03487 0.99149 0.91477 1.18702 0.93870 0.91380 0.95658 1.21741 1.37019 1.05648 0.93540 0.90653 1.26150 0.95029 0.97167 1.02207 1.70187 1.39307 1.14601 1.33707 0.85255 0.77865 0.78294 0.78712 1.17654 1.20656 1.20521 1.21535 1.01532 0.91217 1.11798 0.92541 0.91574 0.89065 0.88648 0.91928 0.91894 0.82489 0.80476 0.91804 0.90097 0.75197 0.87614 0.88010 0.99940 0.99645 0.92849 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.19 127.77 1.30 2.05 16 2 N -0.63 -7.55 3.39 -746.64 -2.53 -10.09 16 3 C 0.09 0.52 9.44 127.77 1.21 1.73 16 4 C 0.24 4.09 6.58 38.57 0.25 4.35 16 5 C -0.24 -3.64 9.38 22.49 0.21 -3.43 16 6 C 0.13 2.40 11.17 84.58 0.94 3.35 16 7 N -0.54 -13.69 10.27 -184.19 -1.89 -15.58 16 8 C 0.14 3.46 6.14 42.46 0.26 3.72 16 9 C 0.17 5.06 5.98 85.63 0.51 5.57 16 10 N -0.71 -21.96 5.55 -466.77 -2.59 -24.55 16 11 C 0.51 21.14 7.83 87.66 0.69 21.83 16 12 O -0.59 -29.97 15.98 -3.02 -0.05 -30.02 16 13 C -0.12 -4.95 5.64 29.85 0.17 -4.78 16 14 C 0.04 2.38 4.26 29.85 0.13 2.51 16 15 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 16 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 17 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 18 N -0.94 -60.46 13.29 21.45 0.28 -60.17 16 19 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 20 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 C -0.23 -4.78 8.87 22.49 0.20 -4.58 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.07 0.71 6.26 -2.39 -0.01 0.70 16 26 H 0.09 0.46 7.92 -2.38 -0.02 0.44 16 27 H 0.09 0.22 7.79 -2.39 -0.02 0.20 16 28 H 0.06 0.33 8.00 -2.38 -0.02 0.31 16 29 H 0.06 0.33 7.98 -2.39 -0.02 0.31 16 30 H 0.16 1.45 6.89 -2.91 -0.02 1.43 16 31 H 0.18 2.21 8.06 -2.92 -0.02 2.19 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.29 8.04 -2.39 -0.02 2.27 16 34 H 0.41 10.47 8.46 -92.71 -0.78 9.69 16 35 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 37 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 38 H -0.01 -0.95 8.10 -2.39 -0.02 -0.97 16 39 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.14 2.56 6.28 -2.91 -0.02 2.54 16 Total: -1.00 -81.24 339.90 2.07 -79.17 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.25 Total: 13.14 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 6.57 Total: 1.03 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -6.73 Total: -110.39 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.05 Total: -30.02 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -81.24 2.07 -79.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927698361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.471 kcal (2) G-P(sol) polarization free energy of solvation -81.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds