Wall clock time and date at job start Mon Mar 30 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35776 * 117.00453 * 2 1 4 4 C 1.38647 * 119.62520 * 179.97438 * 3 2 1 5 5 C 1.38517 * 119.06456 * 179.87817 * 4 3 2 6 6 C 1.39362 * 118.83765 * 0.08735 * 5 4 3 7 7 C 1.38989 * 119.15532 * 0.07480 * 6 5 4 8 8 N 1.32073 * 119.61863 * 359.72586 * 3 2 1 9 9 N 1.39298 * 122.31165 * 179.57216 * 7 6 5 10 10 C 1.46903 * 110.99927 * 253.43151 * 9 7 6 11 11 C 1.46676 * 112.20047 * 18.26571 * 9 7 6 12 12 C 1.53378 * 108.32934 * 310.11891 * 11 9 7 13 13 N 1.40105 * 118.09704 * 180.30409 * 6 5 4 14 14 C 1.46897 * 111.00236 * 72.50112 * 13 6 5 15 15 C 1.52994 * 109.47442 * 195.43966 * 14 13 6 16 16 C 1.50700 * 109.47295 * 178.55110 * 15 14 13 17 17 H 1.07999 * 119.99765 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00182 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99861 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47143 * 90.00302 * 20 18 16 22 22 H 1.48502 * 109.47197 * 210.00216 * 20 18 16 23 23 H 1.48500 * 109.47385 * 330.00258 * 20 18 16 24 24 H 1.08999 * 109.47474 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47229 * 300.00038 * 1 2 3 26 26 H 1.09001 * 109.47166 * 60.00019 * 1 2 3 27 27 H 1.08002 * 120.47312 * 359.85368 * 4 3 2 28 28 H 1.07997 * 120.58255 * 180.10302 * 5 4 3 29 29 H 1.09004 * 109.46654 * 185.51492 * 10 9 7 30 30 H 1.09006 * 109.46959 * 305.50558 * 10 9 7 31 31 H 1.08994 * 109.47603 * 65.50839 * 10 9 7 32 32 H 1.09004 * 109.69248 * 190.41097 * 11 9 7 33 33 H 1.08997 * 109.68983 * 69.82885 * 11 9 7 34 34 H 1.08996 * 109.72159 * 307.03629 * 12 11 9 35 35 H 1.08999 * 109.71829 * 186.37943 * 12 11 9 36 36 H 1.09002 * 109.46764 * 315.44180 * 14 13 6 37 37 H 1.08998 * 109.47034 * 75.43348 * 14 13 6 38 38 H 1.09003 * 109.47064 * 298.54712 * 15 14 13 39 39 H 1.09000 * 109.47073 * 58.54889 * 15 14 13 40 40 H 0.96998 * 120.00176 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.4305 1.2731 0.0005 5 6 4.0473 2.5134 -0.0020 6 6 3.2536 3.6589 -0.0032 7 6 1.8702 3.5241 -0.0002 8 7 1.3189 2.3126 -0.0055 9 7 1.0151 4.6237 0.0076 10 6 0.3867 4.7925 1.3247 11 6 1.6916 5.8550 -0.4136 12 6 2.9911 5.9904 0.3898 13 7 3.8936 4.9051 -0.0124 14 6 4.4941 5.1790 -1.3248 15 6 5.4912 6.3325 -1.1988 16 6 6.1334 6.5900 -2.5376 17 1 5.8581 5.9904 -3.3927 18 6 7.0722 7.5909 -2.6709 19 7 7.4077 8.3206 -1.6295 20 14 7.8687 7.9095 -4.3302 21 1 7.0639 8.9052 -5.0825 22 1 9.2426 8.4352 -4.1270 23 1 7.9328 6.6414 -5.1002 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.0202 0.3683 0.0033 28 1 5.1245 2.5913 -0.0034 29 1 -0.3483 5.5961 1.2762 30 1 -0.1079 3.8648 1.6129 31 1 1.1496 5.0418 2.0620 32 1 1.0481 6.7129 -0.2185 33 1 1.9215 5.8021 -1.4778 34 1 2.7746 5.9128 1.4552 35 1 3.4561 6.9531 0.1775 36 1 5.0121 4.2882 -1.6803 37 1 3.7114 5.4509 -2.0329 38 1 4.9685 7.2300 -0.8680 39 1 6.2597 6.0707 -0.4715 40 1 8.0685 9.0245 -1.7231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932292848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:54 Heat of formation + Delta-G solvation = 25.015866 kcal Electronic energy + Delta-G solvation = -21895.070015 eV Core-core repulsion = 18710.829194 eV Total energy + Delta-G solvation = -3184.240821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.23991 -39.26353 -36.74001 -36.12510 -33.18262 -31.64245 -30.38640 -29.88343 -27.77401 -27.17755 -25.31380 -24.27233 -23.90271 -22.15342 -21.16020 -19.55747 -18.14445 -17.25735 -16.89339 -16.00702 -15.91693 -15.72863 -15.01225 -14.55365 -14.50705 -14.42455 -14.00282 -13.51545 -13.26666 -13.14912 -12.74941 -12.56250 -12.25315 -12.01907 -11.91079 -11.76487 -11.25724 -11.19309 -10.99291 -10.86974 -10.63779 -10.17598 -10.04045 -9.79832 -9.50053 -9.32174 -9.21631 -8.40539 -7.97736 -7.47845 -6.06930 -4.10048 1.23293 1.45034 3.09438 3.28321 3.35078 3.38232 3.46919 3.80174 4.12630 4.43092 4.69933 4.87843 5.03337 5.13182 5.17848 5.21483 5.28380 5.29387 5.31781 5.38632 5.39756 5.47598 5.59792 5.76410 5.81003 5.91828 5.95328 6.08773 6.21886 6.33737 6.39633 6.69216 6.78840 7.00186 7.14114 7.30868 7.51162 7.70550 7.75564 7.95684 8.07547 8.32439 8.96423 9.54417 11.04223 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.004330 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.666695 B = 6464.291771 C = 7120.710789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.312 6.312 3 C 0.313 3.687 4 C -0.189 4.189 5 C -0.033 4.033 6 C 0.006 3.994 7 C 0.304 3.696 8 N -0.532 5.532 9 N -0.486 5.486 10 C 0.036 3.964 11 C 0.021 3.979 12 C 0.015 3.985 13 N -0.482 5.482 14 C 0.064 3.936 15 C 0.029 3.971 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.032 0.968 38 H 0.018 0.982 39 H 0.026 0.974 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 -10.696 5.953 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.219 6.219 3 C 0.131 3.869 4 C -0.211 4.211 5 C -0.061 4.061 6 C -0.097 4.097 7 C 0.073 3.927 8 N -0.258 5.258 9 N -0.203 5.203 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.114 4.114 13 N -0.198 5.198 14 C -0.060 4.060 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.073 0.927 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.834 -10.894 6.001 18.603 hybrid contribution 1.041 0.647 -0.948 1.550 sum -12.793 -10.247 5.053 17.152 Atomic orbital electron populations 1.22752 0.77808 1.02319 1.02322 1.86244 1.22464 1.24543 1.88635 1.19319 0.89038 0.83921 0.94669 1.20891 0.91756 0.99034 1.09427 1.21228 1.00817 0.89516 0.94494 1.19753 0.91153 0.92817 1.05973 1.19115 0.87477 0.88600 0.97529 1.66635 1.40896 0.97530 1.20748 1.58266 1.31325 1.02573 1.28154 1.22405 0.98501 1.03037 0.87028 1.22964 0.95660 0.90633 1.01546 1.22931 0.92008 0.96945 0.99483 1.59385 1.30864 0.98884 1.30645 1.22617 0.97232 1.01609 0.84503 1.19121 0.93104 0.91196 0.97382 1.21129 1.22870 1.17092 0.95216 0.92701 1.24973 0.96599 0.95922 0.96630 1.69960 1.32624 1.21126 1.29365 0.86584 0.78709 0.78533 0.84135 1.20645 1.21152 1.19828 0.89093 0.92674 0.92469 0.84118 0.83422 0.90539 0.90692 0.94574 0.88707 0.89214 0.90572 0.87491 0.91497 0.94964 0.96342 0.95516 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 101.05 1.05 1.50 16 2 O -0.31 -4.20 10.48 -19.04 -0.20 -4.40 16 3 C 0.31 4.71 7.49 -17.30 -0.13 4.58 16 4 C -0.19 -2.66 10.04 -39.33 -0.39 -3.06 16 5 C -0.03 -0.51 9.24 -39.06 -0.36 -0.87 16 6 C 0.01 0.10 5.17 -83.38 -0.43 -0.33 16 7 C 0.30 4.98 5.95 -154.18 -0.92 4.06 16 8 N -0.53 -8.52 9.00 -12.37 -0.11 -8.63 16 9 N -0.49 -7.17 4.95 -180.74 -0.90 -8.06 16 10 C 0.04 0.43 9.32 60.07 0.56 0.99 16 11 C 0.02 0.30 5.86 -3.75 -0.02 0.27 16 12 C 0.02 0.24 5.77 -3.70 -0.02 0.22 16 13 N -0.48 -8.65 4.58 -170.68 -0.78 -9.43 16 14 C 0.06 1.31 4.72 -3.83 -0.02 1.29 16 15 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 16 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 26 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.07 0.90 7.95 -51.93 -0.41 0.49 16 31 H 0.04 0.42 6.65 -51.93 -0.35 0.08 16 32 H 0.09 1.10 7.98 -51.93 -0.41 0.69 16 33 H 0.09 1.43 6.54 -51.93 -0.34 1.09 16 34 H 0.08 1.11 6.60 -51.93 -0.34 0.77 16 35 H 0.11 1.80 6.22 -51.93 -0.32 1.47 16 36 H 0.07 1.37 7.43 -51.93 -0.39 0.98 16 37 H 0.03 0.66 6.46 -51.93 -0.34 0.32 16 38 H 0.02 0.47 6.51 -51.93 -0.34 0.13 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -30.63 321.72 -8.39 -39.03 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.73 Total: -0.40 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.24 Total: -3.80 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -1.05 Total: -51.43 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.40 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.63 -8.39 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932292848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.041 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds