Wall clock time and date at job start Mon Mar 30 2020 01:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35776 * 117.00453 * 2 1 4 4 C 1.38647 * 119.62520 * 179.97438 * 3 2 1 5 5 C 1.38517 * 119.06456 * 179.87817 * 4 3 2 6 6 C 1.39362 * 118.83765 * 0.08735 * 5 4 3 7 7 C 1.38989 * 119.15532 * 0.07480 * 6 5 4 8 8 N 1.32073 * 119.61863 * 359.72586 * 3 2 1 9 9 N 1.39298 * 122.31165 * 179.57216 * 7 6 5 10 10 C 1.46903 * 110.99927 * 253.43151 * 9 7 6 11 11 C 1.46676 * 112.20047 * 18.26571 * 9 7 6 12 12 C 1.53378 * 108.32934 * 310.11891 * 11 9 7 13 13 N 1.40105 * 118.09704 * 180.30409 * 6 5 4 14 14 C 1.46897 * 111.00236 * 72.50112 * 13 6 5 15 15 C 1.52994 * 109.47442 * 195.43966 * 14 13 6 16 16 C 1.50700 * 109.47295 * 178.55110 * 15 14 13 17 17 H 1.07999 * 119.99765 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00182 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99861 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47143 * 90.00302 * 20 18 16 22 22 H 1.48502 * 109.47197 * 210.00216 * 20 18 16 23 23 H 1.48500 * 109.47385 * 330.00258 * 20 18 16 24 24 H 1.08999 * 109.47474 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47229 * 300.00038 * 1 2 3 26 26 H 1.09001 * 109.47166 * 60.00019 * 1 2 3 27 27 H 1.08002 * 120.47312 * 359.85368 * 4 3 2 28 28 H 1.07997 * 120.58255 * 180.10302 * 5 4 3 29 29 H 1.09004 * 109.46654 * 185.51492 * 10 9 7 30 30 H 1.09006 * 109.46959 * 305.50558 * 10 9 7 31 31 H 1.08994 * 109.47603 * 65.50839 * 10 9 7 32 32 H 1.09004 * 109.69248 * 190.41097 * 11 9 7 33 33 H 1.08997 * 109.68983 * 69.82885 * 11 9 7 34 34 H 1.08996 * 109.72159 * 307.03629 * 12 11 9 35 35 H 1.08999 * 109.71829 * 186.37943 * 12 11 9 36 36 H 1.09002 * 109.46764 * 315.44180 * 14 13 6 37 37 H 1.08998 * 109.47034 * 75.43348 * 14 13 6 38 38 H 1.09003 * 109.47064 * 298.54712 * 15 14 13 39 39 H 1.09000 * 109.47073 * 58.54889 * 15 14 13 40 40 H 0.96998 * 120.00176 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.4305 1.2731 0.0005 5 6 4.0473 2.5134 -0.0020 6 6 3.2536 3.6589 -0.0032 7 6 1.8702 3.5241 -0.0002 8 7 1.3189 2.3126 -0.0055 9 7 1.0151 4.6237 0.0076 10 6 0.3867 4.7925 1.3247 11 6 1.6916 5.8550 -0.4136 12 6 2.9911 5.9904 0.3898 13 7 3.8936 4.9051 -0.0124 14 6 4.4941 5.1790 -1.3248 15 6 5.4912 6.3325 -1.1988 16 6 6.1334 6.5900 -2.5376 17 1 5.8581 5.9904 -3.3927 18 6 7.0722 7.5909 -2.6709 19 7 7.4077 8.3206 -1.6295 20 14 7.8687 7.9095 -4.3302 21 1 7.0639 8.9052 -5.0825 22 1 9.2426 8.4352 -4.1270 23 1 7.9328 6.6414 -5.1002 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.0202 0.3683 0.0033 28 1 5.1245 2.5913 -0.0034 29 1 -0.3483 5.5961 1.2762 30 1 -0.1079 3.8648 1.6129 31 1 1.1496 5.0418 2.0620 32 1 1.0481 6.7129 -0.2185 33 1 1.9215 5.8021 -1.4778 34 1 2.7746 5.9128 1.4552 35 1 3.4561 6.9531 0.1775 36 1 5.0121 4.2882 -1.6803 37 1 3.7114 5.4509 -2.0329 38 1 4.9685 7.2300 -0.8680 39 1 6.2597 6.0707 -0.4715 40 1 8.0685 9.0245 -1.7231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932292848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:53 Heat of formation + Delta-G solvation = 3.309535 kcal Electronic energy + Delta-G solvation = -21896.011272 eV Core-core repulsion = 18710.829194 eV Total energy + Delta-G solvation = -3185.182078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.44457 -40.38857 -37.91343 -37.41402 -35.17789 -32.94338 -31.82919 -31.32835 -28.95756 -28.18809 -26.89806 -25.53634 -25.27394 -23.52099 -22.63089 -20.94036 -19.25291 -18.76354 -18.36902 -17.57191 -16.99511 -16.88778 -16.48884 -16.08391 -15.94112 -15.51629 -15.29976 -14.74301 -14.59671 -14.31539 -14.13283 -14.03278 -13.65893 -13.39062 -13.06795 -12.88223 -12.82757 -12.68991 -12.45977 -12.28730 -12.15866 -11.88414 -11.56548 -11.34422 -11.17434 -10.75241 -10.68612 -10.51502 -9.17886 -8.76412 -8.20141 -6.31033 0.05845 0.23478 1.41673 1.42268 1.53320 2.03196 2.36164 2.41874 2.61277 2.86017 3.13869 3.52037 3.76608 3.91264 3.92378 3.99610 4.20605 4.24129 4.32720 4.42813 4.45480 4.46335 4.49758 4.55674 4.68861 4.74303 4.81275 4.86367 4.94263 4.96054 5.04017 5.20750 5.43047 5.53602 5.65894 5.70772 5.88486 5.97296 6.15934 6.25051 6.36536 6.84576 6.88662 7.38097 8.91449 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.004330 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.666695 B = 6464.291771 C = 7120.710789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.315 6.315 3 C 0.309 3.691 4 C -0.185 4.185 5 C -0.037 4.037 6 C -0.019 4.019 7 C 0.299 3.701 8 N -0.541 5.541 9 N -0.492 5.492 10 C 0.038 3.962 11 C 0.029 3.971 12 C 0.017 3.983 13 N -0.491 5.491 14 C 0.085 3.915 15 C 0.040 3.960 16 C -0.544 4.544 17 H 0.057 0.943 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.962 3.038 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.265 1.265 24 H 0.125 0.875 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.167 0.833 28 H 0.152 0.848 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.003 0.997 39 H -0.003 1.003 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 -11.730 5.535 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.222 6.222 3 C 0.127 3.873 4 C -0.206 4.206 5 C -0.064 4.064 6 C -0.121 4.121 7 C 0.068 3.932 8 N -0.269 5.269 9 N -0.210 5.210 10 C -0.107 4.107 11 C -0.100 4.100 12 C -0.112 4.112 13 N -0.207 5.207 14 C -0.040 4.040 15 C 0.003 3.997 16 C -0.582 4.582 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.189 1.189 24 H 0.143 0.857 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.185 0.815 28 H 0.170 0.830 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.021 0.979 39 H 0.015 0.985 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.916 -11.950 5.594 19.914 hybrid contribution 1.282 0.874 -0.761 1.728 sum -13.635 -11.075 4.833 18.219 Atomic orbital electron populations 1.22991 0.76132 1.04474 1.01905 1.86253 1.24115 1.23569 1.88241 1.19626 0.89621 0.84255 0.93825 1.21135 0.91759 0.99453 1.08265 1.21393 1.01102 0.89762 0.94154 1.19837 0.91748 0.92446 1.08107 1.19294 0.87526 0.89279 0.97127 1.66690 1.41134 0.97626 1.21411 1.58364 1.30830 1.02138 1.29628 1.22487 0.98784 1.03929 0.85542 1.22898 0.95428 0.91678 0.99986 1.22931 0.92317 0.95445 1.00496 1.59276 1.32266 1.00156 1.29029 1.22178 0.96180 0.99517 0.86113 1.18910 0.93029 0.92206 0.95576 1.21542 1.23214 1.17228 0.96247 0.92427 1.25858 0.97173 0.95649 1.00445 1.70084 1.33324 1.21749 1.31613 0.85499 0.77676 0.78702 0.79493 1.19780 1.20764 1.18945 0.85712 0.92708 0.93219 0.81503 0.83024 0.87953 0.90893 0.94550 0.85737 0.91183 0.89232 0.89153 0.91802 0.95229 0.97911 0.98500 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.38 113.37 1.18 1.92 16 2 O -0.31 -7.83 10.48 -91.04 -0.95 -8.79 16 3 C 0.31 8.85 7.49 84.75 0.63 9.48 16 4 C -0.18 -4.91 10.04 22.43 0.23 -4.69 16 5 C -0.04 -1.11 9.24 22.61 0.21 -0.90 16 6 C -0.02 -0.64 5.17 38.27 0.20 -0.44 16 7 C 0.30 9.56 5.95 132.71 0.79 10.35 16 8 N -0.54 -16.72 9.00 -305.94 -2.75 -19.48 16 9 N -0.49 -13.90 4.95 -725.75 -3.60 -17.50 16 10 C 0.04 0.82 9.32 127.69 1.19 2.01 16 11 C 0.03 0.80 5.86 86.47 0.51 1.31 16 12 C 0.02 0.53 5.77 86.45 0.50 1.03 16 13 N -0.49 -17.87 4.58 -693.92 -3.18 -21.05 16 14 C 0.08 3.54 4.72 86.30 0.41 3.95 16 15 C 0.04 2.06 4.98 29.85 0.15 2.21 16 16 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 17 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 18 C 0.01 0.41 5.46 84.66 0.46 0.87 16 19 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 20 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.03 8.11 -2.39 -0.02 1.01 16 26 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 27 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 29 H 0.10 1.68 8.09 -2.38 -0.02 1.66 16 30 H 0.07 1.62 7.95 -2.38 -0.02 1.60 16 31 H 0.04 0.79 6.65 -2.39 -0.02 0.78 16 32 H 0.12 2.66 7.98 -2.39 -0.02 2.64 16 33 H 0.07 2.22 6.54 -2.39 -0.02 2.21 16 34 H 0.09 2.56 6.60 -2.39 -0.02 2.54 16 35 H 0.09 3.13 6.22 -2.39 -0.01 3.12 16 36 H 0.06 2.66 7.43 -2.39 -0.02 2.64 16 37 H 0.03 1.24 6.46 -2.39 -0.02 1.22 16 38 H 0.00 0.14 6.51 -2.39 -0.02 0.13 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -65.84 321.72 -0.45 -66.29 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.04 Total: 12.75 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 6.68 Total: -2.88 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -9.24 Total: -112.86 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.95 Total: -8.79 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.84 -0.45 -66.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932292848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.602 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds