Wall clock time and date at job start Mon Mar 30 2020 02:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86791 * 120.00351 * 2 1 4 4 H 1.48498 * 109.47157 * 239.99949 * 3 2 1 5 5 H 1.48507 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47303 * 119.99926 * 3 2 1 7 7 C 1.38955 * 119.99458 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99405 * 199.10083 * 7 2 1 9 9 N 1.37092 * 120.00333 * 19.09287 * 7 2 1 10 10 C 1.34785 * 119.99857 * 42.84024 * 9 7 2 11 11 O 1.21294 * 119.99621 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99960 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.46934 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.64163 * 54.58302 * 13 12 10 15 15 C 1.53024 * 109.81624 * 294.05017 * 13 12 10 16 16 C 1.50070 * 110.14726 * 190.77765 * 15 13 12 17 17 C 1.29445 * 124.07155 * 17.12969 * 16 15 13 18 18 C 1.50064 * 124.08084 * 359.53356 * 17 16 15 19 19 C 1.53026 * 110.14634 * 17.12915 * 18 17 16 20 20 C 1.46502 * 120.00442 * 222.83992 * 9 7 2 21 21 C 1.54270 * 110.03041 * 59.56641 * 20 9 7 22 22 C 1.54959 * 104.16103 * 217.13798 * 21 20 9 23 23 C 1.54897 * 102.77543 * 37.88746 * 22 21 20 24 24 C 1.53870 * 110.03070 * 302.35054 * 20 9 7 25 25 H 0.97009 * 119.99539 * 354.71269 * 1 2 3 26 26 H 1.09000 * 109.47332 * 60.00456 * 12 10 9 27 27 H 1.09004 * 109.47177 * 300.00019 * 12 10 9 28 28 H 1.08998 * 109.35886 * 310.98773 * 15 13 12 29 29 H 1.09006 * 109.35968 * 70.70862 * 15 13 12 30 30 H 1.08001 * 117.96154 * 197.15476 * 16 15 13 31 31 H 1.08006 * 117.95689 * 179.55876 * 17 16 15 32 32 H 1.09003 * 109.35734 * 256.92522 * 18 17 16 33 33 H 1.08993 * 109.35522 * 137.33783 * 18 17 16 34 34 H 1.08993 * 109.64265 * 190.87903 * 19 18 17 35 35 H 1.08995 * 109.63937 * 70.24606 * 19 18 17 36 36 H 1.09000 * 110.01758 * 180.95945 * 20 9 7 37 37 H 1.08996 * 110.48504 * 335.78838 * 21 20 9 38 38 H 1.09000 * 110.48176 * 98.42855 * 21 20 9 39 39 H 1.08999 * 110.71937 * 279.57617 * 22 21 20 40 40 H 1.08994 * 110.92534 * 156.29369 * 22 21 20 41 41 H 1.09004 * 110.48335 * 203.40187 * 23 22 21 42 42 H 1.08998 * 110.59718 * 80.82195 * 23 22 21 43 43 H 1.08999 * 110.03078 * 238.56484 * 24 20 9 44 44 H 1.09004 * 110.03574 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2035 -0.0005 8 1 3.0442 -1.2293 0.3055 9 7 1.3799 -2.3579 -0.3894 10 6 0.5747 -2.3554 -1.4703 11 8 0.4063 -1.3316 -2.0987 12 6 -0.1162 -3.6245 -1.8981 13 6 -0.9627 -3.3496 -3.1427 14 1 -0.3394 -2.9062 -3.9191 15 6 -2.1054 -2.3941 -2.7922 16 6 -3.0866 -2.3241 -3.9255 17 6 -3.1538 -3.1944 -4.8814 18 6 -2.2533 -4.3894 -4.9954 19 6 -1.5680 -4.6628 -3.6548 20 6 1.5828 -3.5942 0.3699 21 6 1.1285 -3.3976 1.8310 22 6 2.1576 -4.2068 2.6601 23 6 3.4854 -3.9469 1.9060 24 6 3.0806 -3.9437 0.4174 25 1 -0.4850 0.8366 0.0774 26 1 -0.7590 -3.9778 -1.0919 27 1 0.6302 -4.3850 -2.1275 28 1 -2.6131 -2.7513 -1.8962 29 1 -1.7004 -1.3995 -2.6057 30 1 -3.7796 -1.4960 -3.9449 31 1 -3.9044 -3.0512 -5.6447 32 1 -1.4960 -4.1999 -5.7562 33 1 -2.8427 -5.2596 -5.2841 34 1 -0.7785 -5.4017 -3.7908 35 1 -2.3007 -5.0327 -2.9376 36 1 1.0235 -4.4097 -0.0886 37 1 1.1645 -2.3428 2.1030 38 1 0.1240 -3.7956 1.9749 39 1 1.9102 -5.2683 2.6520 40 1 2.2143 -3.8327 3.6823 41 1 4.1999 -4.7455 2.1054 42 1 3.9047 -2.9815 2.1894 43 1 3.2480 -4.9292 -0.0172 44 1 3.6564 -3.1936 -0.1249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933242643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:41 Heat of formation + Delta-G solvation = -34.612981 kcal Electronic energy + Delta-G solvation = -22848.742950 eV Core-core repulsion = 19765.456771 eV Total energy + Delta-G solvation = -3083.286179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.11816 -37.98670 -36.43041 -33.29291 -32.16351 -31.25249 -30.31501 -28.02468 -27.05571 -26.72851 -24.16394 -22.72801 -20.95234 -20.05522 -19.70136 -18.75399 -17.51711 -16.19654 -15.84077 -15.58004 -14.87004 -14.59442 -14.19405 -13.94476 -13.71326 -13.46460 -13.03251 -12.74663 -12.64683 -12.20223 -12.04500 -11.65458 -11.61240 -11.34647 -11.13670 -10.92972 -10.73136 -10.60835 -10.54420 -10.46696 -10.42308 -10.16769 -10.13757 -10.00245 -9.91720 -9.72088 -9.59487 -8.62826 -8.58392 -7.79822 -6.94335 -6.00926 -3.71877 2.67355 3.35183 3.42081 3.46198 4.29926 4.49493 4.92755 5.10764 5.14434 5.22529 5.28596 5.31594 5.47038 5.55215 5.68158 5.71555 5.74733 5.88363 5.96173 6.00357 6.10143 6.11971 6.17895 6.21806 6.23466 6.27049 6.32522 6.34876 6.40581 6.45023 6.50089 6.55349 6.63620 6.66486 6.85808 6.94316 7.01637 7.03957 7.08861 7.26434 7.43849 7.73800 8.40019 9.20336 9.32798 9.82392 10.47262 11.08378 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.006695 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.505892 B = 4181.062005 C = 5528.291185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.341 4.341 8 H 0.074 0.926 9 N -0.451 5.451 10 C 0.477 3.523 11 O -0.533 6.533 12 C -0.130 4.130 13 C -0.062 4.062 14 H 0.073 0.927 15 C -0.091 4.091 16 C -0.132 4.132 17 C -0.182 4.182 18 C -0.084 4.084 19 C -0.117 4.117 20 C 0.130 3.870 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.261 0.739 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 -10.213 -1.499 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.468 4.468 8 H 0.092 0.908 9 N -0.174 5.174 10 C 0.264 3.736 11 O -0.411 6.411 12 C -0.171 4.171 13 C -0.081 4.081 14 H 0.092 0.908 15 C -0.127 4.127 16 C -0.150 4.150 17 C -0.200 4.200 18 C -0.121 4.121 19 C -0.154 4.154 20 C 0.025 3.975 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.170 4.170 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.689 -9.545 -1.909 9.880 hybrid contribution 0.236 0.801 0.131 0.845 sum -1.454 -8.745 -1.778 9.041 Atomic orbital electron populations 1.69824 1.06365 1.27056 1.43278 1.25146 0.94714 0.98987 0.94723 0.86384 0.79363 0.82591 0.78264 1.20211 1.21440 1.20657 1.18730 0.94780 0.84203 1.49124 0.90814 1.43406 1.44262 1.07114 1.22584 1.19864 0.83174 0.89029 0.81539 1.90476 1.62432 1.33806 1.54374 1.21698 0.98963 0.98437 0.98007 1.20837 0.95967 0.94327 0.96994 0.90816 1.20624 0.93939 1.02975 0.95182 1.22274 0.98630 0.97595 0.96535 1.21902 1.00931 0.97614 0.99579 1.20360 0.97693 0.96104 0.97932 1.21707 0.99439 0.97769 0.96511 1.21668 0.94345 0.88957 0.92543 1.22654 0.96727 1.02161 0.94768 1.22449 0.95978 0.99162 0.98478 1.22256 0.96770 1.00825 0.95620 1.22458 0.97708 1.00418 0.96370 0.92899 0.91131 0.91300 0.91813 0.87829 0.88715 0.88908 0.91477 0.91947 0.92163 0.92175 0.91564 0.89156 0.93127 0.92591 0.92431 0.93007 0.91650 0.93051 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.99 11.67 55.50 0.65 -23.34 16 2 C 0.07 2.06 4.35 -17.47 -0.08 1.98 16 3 Si 0.91 21.99 29.60 -169.99 -5.03 16.96 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.34 -9.07 7.45 -14.93 -0.11 -9.18 16 8 H 0.07 1.92 7.08 -52.49 -0.37 1.55 16 9 N -0.45 -10.87 2.46 -106.54 -0.26 -11.13 16 10 C 0.48 11.68 6.74 -10.98 -0.07 11.60 16 11 O -0.53 -15.07 11.75 5.55 0.07 -15.01 16 12 C -0.13 -2.48 3.49 -27.88 -0.10 -2.58 16 13 C -0.06 -1.12 1.86 -90.40 -0.17 -1.29 16 14 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 15 C -0.09 -1.72 5.06 -28.18 -0.14 -1.87 16 16 C -0.13 -2.16 9.80 -35.90 -0.35 -2.52 16 17 C -0.18 -2.63 9.80 -35.90 -0.35 -2.98 16 18 C -0.08 -1.11 6.12 -28.18 -0.17 -1.28 16 19 C -0.12 -1.66 5.31 -26.51 -0.14 -1.80 16 20 C 0.13 2.52 3.20 -66.81 -0.21 2.31 16 21 C -0.12 -2.32 6.42 -25.03 -0.16 -2.48 16 22 C -0.12 -1.84 6.91 -24.70 -0.17 -2.01 16 23 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 24 C -0.13 -2.25 6.19 -25.62 -0.16 -2.41 16 25 H 0.26 7.34 8.32 -40.82 -0.34 7.00 16 26 H 0.07 1.29 7.77 -51.93 -0.40 0.89 16 27 H 0.07 1.17 7.78 -51.93 -0.40 0.76 16 28 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 29 H 0.10 2.42 6.31 -51.93 -0.33 2.09 16 30 H 0.09 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.09 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 36 H 0.07 1.17 5.82 -51.93 -0.30 0.87 16 37 H 0.09 2.01 7.10 -51.93 -0.37 1.64 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.45 6.86 -51.93 -0.36 1.09 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -30.06 336.89 -9.64 -39.70 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.57 Total: 4.21 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.56 Total: -16.47 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.39 Total: -34.47 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.07 Total: -15.01 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.06 -9.64 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933242643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.086 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds