Wall clock time and date at job start Mon Mar 30 2020 02:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86791 * 120.00351 * 2 1 4 4 H 1.48498 * 109.47157 * 239.99949 * 3 2 1 5 5 H 1.48507 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47303 * 119.99926 * 3 2 1 7 7 C 1.38955 * 119.99458 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99405 * 199.10083 * 7 2 1 9 9 N 1.37092 * 120.00333 * 19.09287 * 7 2 1 10 10 C 1.34785 * 119.99857 * 42.84024 * 9 7 2 11 11 O 1.21294 * 119.99621 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99960 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.46934 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.64163 * 54.58302 * 13 12 10 15 15 C 1.53024 * 109.81624 * 294.05017 * 13 12 10 16 16 C 1.50070 * 110.14726 * 190.77765 * 15 13 12 17 17 C 1.29445 * 124.07155 * 17.12969 * 16 15 13 18 18 C 1.50064 * 124.08084 * 359.53356 * 17 16 15 19 19 C 1.53026 * 110.14634 * 17.12915 * 18 17 16 20 20 C 1.46502 * 120.00442 * 222.83992 * 9 7 2 21 21 C 1.54270 * 110.03041 * 59.56641 * 20 9 7 22 22 C 1.54959 * 104.16103 * 217.13798 * 21 20 9 23 23 C 1.54897 * 102.77543 * 37.88746 * 22 21 20 24 24 C 1.53870 * 110.03070 * 302.35054 * 20 9 7 25 25 H 0.97009 * 119.99539 * 354.71269 * 1 2 3 26 26 H 1.09000 * 109.47332 * 60.00456 * 12 10 9 27 27 H 1.09004 * 109.47177 * 300.00019 * 12 10 9 28 28 H 1.08998 * 109.35886 * 310.98773 * 15 13 12 29 29 H 1.09006 * 109.35968 * 70.70862 * 15 13 12 30 30 H 1.08001 * 117.96154 * 197.15476 * 16 15 13 31 31 H 1.08006 * 117.95689 * 179.55876 * 17 16 15 32 32 H 1.09003 * 109.35734 * 256.92522 * 18 17 16 33 33 H 1.08993 * 109.35522 * 137.33783 * 18 17 16 34 34 H 1.08993 * 109.64265 * 190.87903 * 19 18 17 35 35 H 1.08995 * 109.63937 * 70.24606 * 19 18 17 36 36 H 1.09000 * 110.01758 * 180.95945 * 20 9 7 37 37 H 1.08996 * 110.48504 * 335.78838 * 21 20 9 38 38 H 1.09000 * 110.48176 * 98.42855 * 21 20 9 39 39 H 1.08999 * 110.71937 * 279.57617 * 22 21 20 40 40 H 1.08994 * 110.92534 * 156.29369 * 22 21 20 41 41 H 1.09004 * 110.48335 * 203.40187 * 23 22 21 42 42 H 1.08998 * 110.59718 * 80.82195 * 23 22 21 43 43 H 1.08999 * 110.03078 * 238.56484 * 24 20 9 44 44 H 1.09004 * 110.03574 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2035 -0.0005 8 1 3.0442 -1.2293 0.3055 9 7 1.3799 -2.3579 -0.3894 10 6 0.5747 -2.3554 -1.4703 11 8 0.4063 -1.3316 -2.0987 12 6 -0.1162 -3.6245 -1.8981 13 6 -0.9627 -3.3496 -3.1427 14 1 -0.3394 -2.9062 -3.9191 15 6 -2.1054 -2.3941 -2.7922 16 6 -3.0866 -2.3241 -3.9255 17 6 -3.1538 -3.1944 -4.8814 18 6 -2.2533 -4.3894 -4.9954 19 6 -1.5680 -4.6628 -3.6548 20 6 1.5828 -3.5942 0.3699 21 6 1.1285 -3.3976 1.8310 22 6 2.1576 -4.2068 2.6601 23 6 3.4854 -3.9469 1.9060 24 6 3.0806 -3.9437 0.4174 25 1 -0.4850 0.8366 0.0774 26 1 -0.7590 -3.9778 -1.0919 27 1 0.6302 -4.3850 -2.1275 28 1 -2.6131 -2.7513 -1.8962 29 1 -1.7004 -1.3995 -2.6057 30 1 -3.7796 -1.4960 -3.9449 31 1 -3.9044 -3.0512 -5.6447 32 1 -1.4960 -4.1999 -5.7562 33 1 -2.8427 -5.2596 -5.2841 34 1 -0.7785 -5.4017 -3.7908 35 1 -2.3007 -5.0327 -2.9376 36 1 1.0235 -4.4097 -0.0886 37 1 1.1645 -2.3428 2.1030 38 1 0.1240 -3.7956 1.9749 39 1 1.9102 -5.2683 2.6520 40 1 2.2143 -3.8327 3.6823 41 1 4.1999 -4.7455 2.1054 42 1 3.9047 -2.9815 2.1894 43 1 3.2480 -4.9292 -0.0172 44 1 3.6564 -3.1936 -0.1249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933242643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:41 Heat of formation + Delta-G solvation = -49.953826 kcal Electronic energy + Delta-G solvation = -22849.408179 eV Core-core repulsion = 19765.456771 eV Total energy + Delta-G solvation = -3083.951408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77687 -39.36237 -38.03609 -35.13856 -33.79159 -33.03424 -31.53573 -29.40952 -28.71975 -28.22261 -26.01896 -23.98093 -22.44496 -21.35217 -21.27305 -20.52113 -18.81838 -18.01090 -17.54437 -16.92904 -16.56909 -16.19016 -15.84046 -15.43796 -15.27073 -14.92210 -14.53488 -14.18381 -14.02884 -13.68231 -13.57245 -13.19480 -13.04881 -12.87429 -12.79445 -12.72472 -12.46555 -12.28673 -12.10777 -12.04307 -11.80785 -11.75334 -11.53695 -11.36542 -11.31651 -11.19041 -10.91818 -10.65953 -9.87889 -9.68308 -8.91565 -8.11148 -5.82882 1.35145 1.43676 1.45403 1.45978 2.33361 2.61271 3.25215 3.32254 3.85893 3.88531 3.92501 3.95213 4.04750 4.22429 4.37131 4.43009 4.51219 4.56019 4.61016 4.66727 4.73419 4.83313 4.85105 4.86488 4.90629 4.93625 4.97441 5.05341 5.08718 5.16094 5.18063 5.22109 5.31991 5.32632 5.48401 5.52490 5.59571 5.62470 5.63328 5.72561 5.83733 6.13980 6.32062 7.16616 7.37771 7.87518 8.54699 8.97741 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.006695 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.505892 B = 4181.062005 C = 5528.291185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.342 4.342 8 H 0.072 0.928 9 N -0.465 5.465 10 C 0.459 3.541 11 O -0.582 6.582 12 C -0.118 4.118 13 C -0.059 4.059 14 H 0.048 0.952 15 C -0.082 4.082 16 C -0.167 4.167 17 C -0.157 4.157 18 C -0.088 4.088 19 C -0.108 4.108 20 C 0.121 3.879 21 C -0.125 4.125 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.253 0.747 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 -13.777 -1.873 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.182 4.182 3 Si 0.784 3.216 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.470 4.470 8 H 0.090 0.910 9 N -0.186 5.186 10 C 0.248 3.752 11 O -0.463 6.463 12 C -0.159 4.159 13 C -0.078 4.078 14 H 0.066 0.934 15 C -0.119 4.119 16 C -0.185 4.185 17 C -0.175 4.175 18 C -0.125 4.125 19 C -0.146 4.146 20 C 0.017 3.983 21 C -0.164 4.164 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.165 4.165 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.298 -13.137 -2.248 13.391 hybrid contribution 0.149 1.857 0.210 1.875 sum -1.149 -11.280 -2.037 11.520 Atomic orbital electron populations 1.69944 1.07586 1.26856 1.45614 1.25858 0.95353 1.01876 0.95084 0.85574 0.78250 0.79390 0.78434 1.21174 1.21834 1.18497 1.18902 0.94809 0.85492 1.47769 0.91000 1.43678 1.43828 1.08005 1.23120 1.20878 0.82837 0.90356 0.81133 1.90451 1.63870 1.36065 1.55919 1.21642 0.99431 0.96041 0.98758 1.20792 0.95004 0.96239 0.95763 0.93366 1.20383 0.94959 1.00289 0.96301 1.22142 0.99505 0.99543 0.97360 1.22278 1.00336 0.96698 0.98210 1.20499 0.97958 0.96598 0.97440 1.21670 1.00215 0.95540 0.97146 1.22005 0.96503 0.87405 0.92434 1.22577 0.98454 1.00101 0.95237 1.22411 0.94072 1.00198 0.98079 1.22248 0.97627 1.01132 0.94123 1.22422 0.95316 1.01100 0.97701 0.93805 0.90121 0.88371 0.92730 0.93409 0.88685 0.86358 0.90730 0.88590 0.89788 0.91356 0.89279 0.93730 0.92654 0.89513 0.91541 0.89630 0.93586 0.89830 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -52.90 11.67 21.66 0.25 -52.65 16 2 C 0.02 1.40 4.35 84.93 0.37 1.77 16 3 Si 0.96 47.05 29.60 68.60 2.03 49.08 16 4 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.34 -18.85 7.45 84.04 0.63 -18.22 16 8 H 0.07 3.89 7.08 -2.91 -0.02 3.87 16 9 N -0.46 -22.91 2.46 -609.37 -1.50 -24.40 16 10 C 0.46 23.22 6.74 87.66 0.59 23.81 16 11 O -0.58 -34.89 11.75 -3.07 -0.04 -34.92 16 12 C -0.12 -4.44 3.49 29.85 0.10 -4.33 16 13 C -0.06 -2.10 1.86 -10.65 -0.02 -2.12 16 14 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 15 C -0.08 -3.28 5.06 29.66 0.15 -3.13 16 16 C -0.17 -5.52 9.80 27.04 0.27 -5.26 16 17 C -0.16 -4.17 9.80 27.04 0.27 -3.91 16 18 C -0.09 -1.99 6.12 29.66 0.18 -1.81 16 19 C -0.11 -2.73 5.31 30.74 0.16 -2.57 16 20 C 0.12 4.55 3.20 45.71 0.15 4.70 16 21 C -0.13 -4.59 6.42 31.69 0.20 -4.39 16 22 C -0.11 -2.98 6.91 31.91 0.22 -2.76 16 23 C -0.11 -3.19 6.83 31.67 0.22 -2.97 16 24 C -0.13 -4.11 6.19 31.32 0.19 -3.91 16 25 H 0.25 15.20 8.32 -92.70 -0.77 14.43 16 26 H 0.08 2.86 7.77 -2.39 -0.02 2.84 16 27 H 0.10 3.07 7.78 -2.39 -0.02 3.05 16 28 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 29 H 0.05 2.43 6.31 -2.38 -0.02 2.42 16 30 H 0.10 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 36 H 0.09 2.92 5.82 -2.39 -0.01 2.91 16 37 H 0.04 2.04 7.10 -2.39 -0.02 2.03 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 1.75 6.86 -2.38 -0.02 1.73 16 Total: -1.00 -71.39 336.89 5.38 -66.02 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.95 Total: 21.98 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.68 Total: -25.10 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.24 Total: -77.05 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.04 Total: -34.92 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -71.39 5.38 -66.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933242643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.063 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds