Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99996 * 2 1 4 4 H 1.07998 * 120.00378 * 200.65175 * 3 2 1 5 5 C 1.38816 * 119.99529 * 20.65440 * 3 2 1 6 6 N 1.31618 * 120.00055 * 13.97540 * 5 3 2 7 7 Si 1.86797 * 119.99735 * 193.96770 * 5 3 2 8 8 H 1.48502 * 109.47223 * 94.98258 * 7 5 3 9 9 H 1.48499 * 109.47219 * 214.98422 * 7 5 3 10 10 H 1.48499 * 109.47545 * 334.98571 * 7 5 3 11 11 C 1.46501 * 119.99956 * 180.02562 * 2 1 3 12 12 C 1.53039 * 109.45823 * 299.99344 * 11 2 1 13 13 C 1.53188 * 109.31064 * 181.37130 * 12 11 2 14 14 N 1.46923 * 108.77994 * 305.36739 * 13 12 11 15 15 C 1.34770 * 120.63260 * 233.58288 * 14 13 12 16 16 O 1.21698 * 120.00042 * 8.59669 * 15 14 13 17 17 C 1.46684 * 120.00329 * 188.59124 * 15 14 13 18 18 C 1.37867 * 126.23644 * 208.54711 * 17 15 14 19 19 C 1.39829 * 107.08488 * 179.76051 * 18 17 15 20 20 C 1.35449 * 107.86795 * 0.24159 * 19 18 17 21 21 N 1.35536 * 108.87057 * 359.97438 * 20 19 18 22 22 H 0.97000 * 125.67976 * 180.02562 * 21 20 19 23 23 C 1.46934 * 118.73767 * 53.85916 * 14 13 12 24 24 C 1.53034 * 109.45049 * 60.05814 * 11 2 1 25 25 H 1.09006 * 109.47034 * 274.86294 * 1 2 3 26 26 H 1.08995 * 109.47487 * 34.86272 * 1 2 3 27 27 H 1.09003 * 109.47334 * 154.86339 * 1 2 3 28 28 H 0.97003 * 119.99770 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.45500 * 180.02562 * 11 2 1 30 30 H 1.09006 * 109.49264 * 61.42513 * 12 11 2 31 31 H 1.08993 * 109.52617 * 301.34257 * 12 11 2 32 32 H 1.09006 * 109.58943 * 185.57758 * 13 12 11 33 33 H 1.09001 * 109.70303 * 65.22398 * 13 12 11 34 34 H 1.08008 * 126.45700 * 0.02562 * 18 17 15 35 35 H 1.08005 * 126.06770 * 180.26219 * 19 18 17 36 36 H 1.08000 * 125.56882 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.58391 * 65.92443 * 23 14 13 38 38 H 1.08992 * 109.58416 * 186.35560 * 23 14 13 39 39 H 1.09004 * 109.49964 * 298.57486 * 24 11 2 40 40 H 1.09006 * 109.49880 * 58.66863 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1776 1.2161 -0.3299 5 6 1.5225 2.3494 0.4241 6 7 0.3821 2.2816 1.0777 7 14 2.2970 4.0113 0.0671 8 1 1.7141 4.5719 -1.1783 9 1 2.0296 4.9354 1.1984 10 1 3.7632 3.8480 -0.1026 11 6 2.1975 -1.2687 -0.0006 12 6 1.8277 -2.0715 1.2488 13 6 2.6210 -3.3819 1.2622 14 7 2.3844 -4.0910 -0.0026 15 6 1.9581 -5.3695 -0.0037 16 8 1.6160 -5.8978 1.0379 17 6 1.9063 -6.1243 -1.2604 18 6 1.0421 -7.1572 -1.5556 19 6 1.3364 -7.5802 -2.8555 20 6 2.3561 -6.8189 -3.3194 21 7 2.7135 -5.9322 -2.3587 22 1 3.4183 -5.2700 -2.4339 23 6 2.6273 -3.3818 -1.2663 24 6 1.8286 -2.0696 -1.2513 25 1 -0.3633 0.0871 1.0240 26 1 -0.3634 0.8432 -0.5874 27 1 -0.3634 -0.9303 -0.4365 28 1 -0.0560 3.0946 1.3744 29 1 3.2691 -1.0693 0.0000 30 1 0.7603 -2.2925 1.2364 31 1 2.0688 -1.4911 2.1393 32 1 2.2897 -4.0011 2.0959 33 1 3.6844 -3.1666 1.3670 34 1 0.2786 -7.5606 -0.9068 35 1 0.8386 -8.3730 -3.3942 36 1 2.8099 -6.9039 -4.2958 37 1 3.6909 -3.1642 -1.3646 38 1 2.3000 -4.0009 -2.1015 39 1 0.7612 -2.2906 -1.2402 40 1 2.0707 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985264796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = 47.305710 kcal Electronic energy + Delta-G solvation = -21937.284438 eV Core-core repulsion = 18754.010177 eV Total energy + Delta-G solvation = -3183.274261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52197 -39.44679 -37.46265 -35.13663 -32.37812 -31.43882 -30.75665 -29.92642 -28.94553 -26.03150 -25.14563 -23.19367 -22.75211 -21.33847 -20.77393 -20.13346 -19.14464 -17.66327 -16.81244 -16.37614 -15.48612 -15.33317 -15.05554 -14.09276 -13.98365 -13.87414 -13.80062 -13.51062 -13.31253 -13.06310 -12.69619 -12.42007 -12.34676 -12.25335 -11.73215 -11.49372 -11.00077 -10.89622 -10.81904 -10.41478 -10.26673 -10.18423 -9.95996 -9.86503 -9.63707 -9.10664 -8.64714 -8.55391 -8.28250 -6.80473 -5.74054 -3.18850 1.47218 2.61613 2.90747 2.99134 3.35782 3.41592 3.43599 3.44003 4.45379 4.54951 4.88237 4.90606 5.15452 5.21875 5.26057 5.31652 5.36559 5.45231 5.52328 5.71779 5.80822 5.94078 5.95592 6.04470 6.10396 6.19352 6.31620 6.47902 6.53235 6.63949 6.77104 6.80885 6.93611 6.96876 7.21789 7.38561 7.45307 7.71557 7.79223 8.17355 8.36631 9.21338 9.85322 10.33956 11.30682 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.004012 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.264302 B = 6977.260339 C = 7278.005562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.904 3.096 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.180 3.820 12 C -0.145 4.145 13 C 0.115 3.885 14 N -0.606 5.606 15 C 0.587 3.413 16 O -0.535 6.535 17 C -0.044 4.044 18 C -0.117 4.117 19 C -0.211 4.211 20 C 0.012 3.988 21 N -0.540 5.540 22 H 0.419 0.581 23 C 0.096 3.904 24 C -0.145 4.145 25 H 0.028 0.972 26 H 0.042 0.958 27 H -0.002 1.002 28 H 0.252 0.748 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.170 0.830 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 -15.801 -8.542 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.386 4.386 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.007 4.007 14 N -0.339 5.339 15 C 0.375 3.625 16 O -0.411 6.411 17 C -0.157 4.157 18 C -0.143 4.143 19 C -0.235 4.235 20 C -0.123 4.123 21 N -0.139 5.139 22 H 0.259 0.741 23 C -0.027 4.027 24 C -0.185 4.185 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.187 0.813 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.933 -15.760 -7.867 18.292 hybrid contribution 0.590 1.361 -0.319 1.517 sum 5.524 -14.399 -8.186 17.460 Atomic orbital electron populations 1.20745 0.82640 0.95319 0.99329 1.43976 1.01845 1.00136 1.85817 1.19245 0.97028 0.85070 1.37221 0.91346 1.24975 0.97801 0.98355 0.98554 1.70093 1.18386 1.26768 1.39885 0.86244 0.78640 0.84244 0.77444 1.21599 1.21796 1.20506 1.20261 0.95934 0.86086 0.90581 1.22508 1.00177 0.94323 1.01516 1.21736 0.99742 0.93960 0.85312 1.48103 1.66106 1.11492 1.08212 1.17175 0.77323 0.81023 0.86975 1.90816 1.48574 1.69660 1.32083 1.20434 1.01317 1.04294 0.89664 1.21291 1.00192 0.96080 0.96755 1.20873 1.01675 1.04406 0.96545 1.22037 1.00705 0.94721 0.94844 1.42527 1.29457 1.29647 1.12269 0.74086 1.22178 1.00202 0.94933 0.85416 1.22534 1.00228 0.94227 1.01524 0.95355 0.93965 0.98402 0.93768 0.91951 0.92062 0.90492 0.89411 0.91610 0.83746 0.84068 0.81321 0.91395 0.90262 0.91698 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.03 59.85 0.48 4.51 16 2 N -0.60 -14.44 2.81 -173.44 -0.49 -14.93 16 3 C -0.26 -6.84 9.61 -15.06 -0.14 -6.99 16 4 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 5 C 0.00 0.04 5.08 -17.43 -0.09 -0.05 16 6 N -0.91 -26.23 10.63 55.49 0.59 -25.64 16 7 Si 0.90 21.53 29.58 -169.99 -5.03 16.51 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.18 3.45 2.55 -67.89 -0.17 3.28 16 12 C -0.14 -2.62 5.34 -26.61 -0.14 -2.76 16 13 C 0.11 1.75 6.44 -3.71 -0.02 1.72 16 14 N -0.61 -8.74 2.97 -174.04 -0.52 -9.26 16 15 C 0.59 9.18 7.60 -12.85 -0.10 9.09 16 16 O -0.53 -10.10 16.43 5.19 0.09 -10.01 16 17 C -0.04 -0.58 6.20 -81.98 -0.51 -1.08 16 18 C -0.12 -1.46 10.76 -39.12 -0.42 -1.88 16 19 C -0.21 -2.07 10.81 -39.98 -0.43 -2.51 16 20 C 0.01 0.10 11.89 -16.91 -0.20 -0.10 16 21 N -0.54 -5.17 4.69 -9.39 -0.04 -5.21 16 22 H 0.42 3.10 6.97 -40.82 -0.28 2.82 16 23 C 0.10 1.19 5.31 -3.48 -0.02 1.17 16 24 C -0.14 -2.31 5.34 -26.39 -0.14 -2.45 16 25 H 0.03 0.76 7.41 -51.93 -0.38 0.37 16 26 H 0.04 1.12 7.19 -51.93 -0.37 0.74 16 27 H 0.00 -0.05 6.47 -51.93 -0.34 -0.39 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.06 1.19 7.85 -51.93 -0.41 0.78 16 30 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.85 4.67 -51.93 -0.24 0.61 16 39 H 0.06 1.13 6.72 -51.93 -0.35 0.78 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -32.22 318.25 -8.16 -40.39 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.65 Total: 1.42 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.91 Total: 1.95 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.46 Total: -55.04 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.22 -8.16 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985264796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.691 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds