Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99996 * 2 1 4 4 H 1.07998 * 120.00378 * 200.65175 * 3 2 1 5 5 C 1.38816 * 119.99529 * 20.65440 * 3 2 1 6 6 N 1.31618 * 120.00055 * 13.97540 * 5 3 2 7 7 Si 1.86797 * 119.99735 * 193.96770 * 5 3 2 8 8 H 1.48502 * 109.47223 * 94.98258 * 7 5 3 9 9 H 1.48499 * 109.47219 * 214.98422 * 7 5 3 10 10 H 1.48499 * 109.47545 * 334.98571 * 7 5 3 11 11 C 1.46501 * 119.99956 * 180.02562 * 2 1 3 12 12 C 1.53039 * 109.45823 * 299.99344 * 11 2 1 13 13 C 1.53188 * 109.31064 * 181.37130 * 12 11 2 14 14 N 1.46923 * 108.77994 * 305.36739 * 13 12 11 15 15 C 1.34770 * 120.63260 * 233.58288 * 14 13 12 16 16 O 1.21698 * 120.00042 * 8.59669 * 15 14 13 17 17 C 1.46684 * 120.00329 * 188.59124 * 15 14 13 18 18 C 1.37867 * 126.23644 * 208.54711 * 17 15 14 19 19 C 1.39829 * 107.08488 * 179.76051 * 18 17 15 20 20 C 1.35449 * 107.86795 * 0.24159 * 19 18 17 21 21 N 1.35536 * 108.87057 * 359.97438 * 20 19 18 22 22 H 0.97000 * 125.67976 * 180.02562 * 21 20 19 23 23 C 1.46934 * 118.73767 * 53.85916 * 14 13 12 24 24 C 1.53034 * 109.45049 * 60.05814 * 11 2 1 25 25 H 1.09006 * 109.47034 * 274.86294 * 1 2 3 26 26 H 1.08995 * 109.47487 * 34.86272 * 1 2 3 27 27 H 1.09003 * 109.47334 * 154.86339 * 1 2 3 28 28 H 0.97003 * 119.99770 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.45500 * 180.02562 * 11 2 1 30 30 H 1.09006 * 109.49264 * 61.42513 * 12 11 2 31 31 H 1.08993 * 109.52617 * 301.34257 * 12 11 2 32 32 H 1.09006 * 109.58943 * 185.57758 * 13 12 11 33 33 H 1.09001 * 109.70303 * 65.22398 * 13 12 11 34 34 H 1.08008 * 126.45700 * 0.02562 * 18 17 15 35 35 H 1.08005 * 126.06770 * 180.26219 * 19 18 17 36 36 H 1.08000 * 125.56882 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.58391 * 65.92443 * 23 14 13 38 38 H 1.08992 * 109.58416 * 186.35560 * 23 14 13 39 39 H 1.09004 * 109.49964 * 298.57486 * 24 11 2 40 40 H 1.09006 * 109.49880 * 58.66863 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1776 1.2161 -0.3299 5 6 1.5225 2.3494 0.4241 6 7 0.3821 2.2816 1.0777 7 14 2.2970 4.0113 0.0671 8 1 1.7141 4.5719 -1.1783 9 1 2.0296 4.9354 1.1984 10 1 3.7632 3.8480 -0.1026 11 6 2.1975 -1.2687 -0.0006 12 6 1.8277 -2.0715 1.2488 13 6 2.6210 -3.3819 1.2622 14 7 2.3844 -4.0910 -0.0026 15 6 1.9581 -5.3695 -0.0037 16 8 1.6160 -5.8978 1.0379 17 6 1.9063 -6.1243 -1.2604 18 6 1.0421 -7.1572 -1.5556 19 6 1.3364 -7.5802 -2.8555 20 6 2.3561 -6.8189 -3.3194 21 7 2.7135 -5.9322 -2.3587 22 1 3.4183 -5.2700 -2.4339 23 6 2.6273 -3.3818 -1.2663 24 6 1.8286 -2.0696 -1.2513 25 1 -0.3633 0.0871 1.0240 26 1 -0.3634 0.8432 -0.5874 27 1 -0.3634 -0.9303 -0.4365 28 1 -0.0560 3.0946 1.3744 29 1 3.2691 -1.0693 0.0000 30 1 0.7603 -2.2925 1.2364 31 1 2.0688 -1.4911 2.1393 32 1 2.2897 -4.0011 2.0959 33 1 3.6844 -3.1666 1.3670 34 1 0.2786 -7.5606 -0.9068 35 1 0.8386 -8.3730 -3.3942 36 1 2.8099 -6.9039 -4.2958 37 1 3.6909 -3.1642 -1.3646 38 1 2.3000 -4.0009 -2.1015 39 1 0.7612 -2.2906 -1.2402 40 1 2.0707 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985264796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = 26.929721 kcal Electronic energy + Delta-G solvation = -21938.168007 eV Core-core repulsion = 18754.010177 eV Total energy + Delta-G solvation = -3184.157830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.40354 -40.60363 -38.90732 -36.77897 -34.04524 -32.60028 -31.75634 -31.55588 -29.96244 -28.06534 -26.57898 -24.49052 -24.22361 -22.62410 -21.65916 -21.03739 -20.50540 -18.86786 -18.69933 -17.58316 -16.93702 -16.49958 -16.45078 -15.75384 -15.18778 -15.12707 -14.93502 -14.75148 -14.60504 -14.55132 -13.99140 -13.72419 -13.56153 -13.23248 -13.14181 -13.05634 -12.80373 -12.65953 -12.38858 -12.24380 -12.07088 -11.83825 -11.67525 -11.33414 -11.13794 -10.62908 -9.92718 -9.80227 -9.12754 -8.81063 -7.81567 -5.28402 0.52641 1.47416 1.48336 1.57423 1.77323 1.86943 2.12492 2.45574 2.52634 3.31830 3.50337 3.62281 3.80203 4.02517 4.09709 4.25687 4.31545 4.38046 4.43058 4.47859 4.56207 4.63840 4.67789 4.77282 4.87652 4.92825 5.03778 5.15245 5.21112 5.27290 5.35242 5.44780 5.54317 5.64636 5.69588 5.80463 5.96544 6.30642 6.33053 6.58687 7.00904 7.14836 7.87886 8.32639 9.22169 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.004012 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.264302 B = 6977.260339 C = 7278.005562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.611 5.611 3 C -0.259 4.259 4 H 0.079 0.921 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.969 3.031 8 H -0.289 1.289 9 H -0.300 1.300 10 H -0.263 1.263 11 C 0.174 3.826 12 C -0.134 4.134 13 C 0.124 3.876 14 N -0.606 5.606 15 C 0.584 3.416 16 O -0.580 6.580 17 C -0.077 4.077 18 C -0.132 4.132 19 C -0.226 4.226 20 C 0.042 3.958 21 N -0.530 5.530 22 H 0.431 0.569 23 C 0.104 3.896 24 C -0.134 4.134 25 H -0.004 1.004 26 H 0.015 0.985 27 H 0.022 0.978 28 H 0.246 0.754 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.162 0.838 36 H 0.216 0.784 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 -16.926 -11.444 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.333 5.333 3 C -0.389 4.389 4 H 0.097 0.903 5 C -0.252 4.252 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.216 1.216 9 H -0.227 1.227 10 H -0.188 1.188 11 C 0.067 3.933 12 C -0.174 4.174 13 C 0.001 3.999 14 N -0.338 5.338 15 C 0.375 3.625 16 O -0.460 6.460 17 C -0.189 4.189 18 C -0.160 4.160 19 C -0.250 4.250 20 C -0.094 4.094 21 N -0.130 5.130 22 H 0.273 0.727 23 C -0.018 4.018 24 C -0.174 4.174 25 H 0.014 0.986 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.150 0.850 35 H 0.179 0.821 36 H 0.232 0.768 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.064 0.936 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.377 -16.898 -10.801 21.369 hybrid contribution -0.159 1.610 0.528 1.701 sum 7.218 -15.288 -10.273 19.783 Atomic orbital electron populations 1.20382 0.83445 0.95249 0.97018 1.44220 1.01720 1.01506 1.85871 1.19661 0.97418 0.86054 1.35779 0.90328 1.25769 0.98544 1.01811 0.99048 1.70275 1.20047 1.27034 1.41639 0.85216 0.78597 0.79869 0.76572 1.21608 1.22709 1.18774 1.20523 0.95792 0.84580 0.92365 1.22307 0.99179 0.95621 1.00284 1.21566 1.00457 0.91985 0.85864 1.48147 1.65743 1.11338 1.08531 1.17570 0.76303 0.81223 0.87451 1.90782 1.50644 1.70653 1.33961 1.20030 1.03575 1.05351 0.89991 1.21490 1.00114 0.96213 0.98149 1.21192 1.02675 1.05566 0.95538 1.22781 0.98874 0.92217 0.95535 1.42490 1.29095 1.30040 1.11337 0.72659 1.22295 1.01578 0.92917 0.85059 1.22347 0.99697 0.95680 0.99694 0.98584 0.96624 0.95990 0.94511 0.91150 0.94419 0.92539 0.90524 0.89061 0.84978 0.82052 0.76751 0.87974 0.88016 0.93584 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.32 8.03 127.77 1.03 10.35 16 2 N -0.61 -29.74 2.81 -702.63 -1.98 -31.72 16 3 C -0.26 -13.77 9.61 84.03 0.81 -12.97 16 4 H 0.08 3.95 7.81 -2.91 -0.02 3.93 16 5 C -0.06 -3.17 5.08 84.86 0.43 -2.74 16 6 N -0.94 -56.28 10.63 21.65 0.23 -56.05 16 7 Si 0.97 44.46 29.58 68.60 2.03 46.49 16 8 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 9 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 C 0.17 6.51 2.55 45.02 0.11 6.63 16 12 C -0.13 -4.89 5.34 30.67 0.16 -4.72 16 13 C 0.12 3.68 6.44 86.36 0.56 4.24 16 14 N -0.61 -16.53 2.97 -822.76 -2.44 -18.97 16 15 C 0.58 17.94 7.60 86.45 0.66 18.60 16 16 O -0.58 -22.47 16.43 -4.34 -0.07 -22.54 16 17 C -0.08 -1.88 6.20 40.35 0.25 -1.63 16 18 C -0.13 -3.17 10.76 22.57 0.24 -2.93 16 19 C -0.23 -3.74 10.81 22.01 0.24 -3.50 16 20 C 0.04 0.50 11.89 83.48 0.99 1.49 16 21 N -0.53 -8.04 4.69 -183.62 -0.86 -8.90 16 22 H 0.43 4.29 6.97 -92.71 -0.65 3.64 16 23 C 0.10 2.21 5.31 86.51 0.46 2.67 16 24 C -0.13 -3.99 5.34 30.81 0.16 -3.83 16 25 H 0.00 -0.24 7.41 -2.38 -0.02 -0.25 16 26 H 0.01 0.83 7.19 -2.39 -0.02 0.82 16 27 H 0.02 0.97 6.47 -2.39 -0.02 0.96 16 28 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.07 2.53 7.85 -2.39 -0.02 2.51 16 30 H 0.04 1.53 7.72 -2.38 -0.02 1.51 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.48 7.00 -2.38 -0.02 2.47 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.22 0.55 8.06 -2.91 -0.02 0.52 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 1.77 4.67 -2.39 -0.01 1.75 16 39 H 0.05 1.55 6.72 -2.38 -0.02 1.53 16 40 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -73.26 318.25 3.42 -69.85 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.40 Total: 10.18 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 6.10 Total: 11.66 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -5.05 Total: -115.64 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.07 Total: -22.54 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -73.26 3.42 -69.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985264796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.776 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds