Wall clock time and date at job start Mon Mar 30 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34776 * 120.00083 * 2 1 4 4 O 1.21273 * 120.00255 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99892 * 0.02562 * 3 2 1 6 6 C 1.50690 * 109.47163 * 179.97438 * 5 3 2 7 7 C 1.34858 * 125.89120 * 275.04075 * 6 5 3 8 8 C 1.40900 * 107.41627 * 179.73386 * 7 6 5 9 9 C 1.34850 * 107.41621 * 0.37840 * 8 7 6 10 10 N 1.36341 * 125.89174 * 94.99728 * 6 5 3 11 11 H 0.97003 * 125.63345 * 0.05952 * 10 6 5 12 12 C 1.46501 * 119.99884 * 180.02562 * 2 1 3 13 13 C 1.53784 * 113.61542 * 37.49638 * 12 2 1 14 14 C 1.53776 * 87.08106 * 220.01745 * 13 12 2 15 15 N 1.46499 * 113.69168 * 139.99119 * 14 13 12 16 16 C 1.36933 * 119.99970 * 107.46169 * 15 14 13 17 17 H 1.07999 * 120.00419 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00012 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00234 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46999 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47117 * 120.00145 * 20 18 16 23 23 H 1.48498 * 109.47100 * 239.99968 * 20 18 16 24 24 C 1.53779 * 113.61602 * 299.99914 * 12 2 1 25 25 H 1.09000 * 109.46642 * 89.99902 * 1 2 3 26 26 H 1.09004 * 109.46643 * 209.99873 * 1 2 3 27 27 H 1.08995 * 109.46937 * 329.99460 * 1 2 3 28 28 H 1.09003 * 109.46730 * 59.99765 * 5 3 2 29 29 H 1.09000 * 109.46614 * 299.99801 * 5 3 2 30 30 H 1.07991 * 126.29006 * 359.97438 * 7 6 5 31 31 H 1.07999 * 126.29093 * 180.24309 * 8 7 6 32 32 H 1.08002 * 125.89234 * 179.89015 * 9 8 7 33 33 H 1.09001 * 112.84779 * 168.80472 * 12 2 1 34 34 H 1.09000 * 113.61126 * 334.56546 * 13 12 2 35 35 H 1.08998 * 113.60827 * 105.46708 * 13 12 2 36 36 H 1.09004 * 113.61525 * 270.88569 * 14 13 12 37 37 H 0.97005 * 119.99967 * 287.46617 * 15 14 13 38 38 H 0.97001 * 119.99959 * 179.97438 * 19 18 16 39 39 H 1.08995 * 113.61341 * 254.53473 * 24 12 2 40 40 H 1.09003 * 113.61133 * 25.43194 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3647 3.6177 0.0011 7 6 2.9514 4.1558 1.0896 8 6 3.7947 5.1932 0.6448 9 6 3.6847 5.2550 -0.6978 10 7 2.8109 4.2883 -1.0989 11 1 2.5496 4.1076 -2.0155 12 6 2.1976 -1.2688 -0.0006 13 6 1.5374 -2.3608 -0.8588 14 6 1.9130 -3.3526 0.2548 15 7 0.8730 -4.3460 0.5337 16 6 1.0475 -5.6475 0.1455 17 1 1.9521 -5.9418 -0.3659 18 6 0.0619 -6.5887 0.4093 19 7 -1.0407 -6.2300 1.0321 20 14 0.3003 -8.3643 -0.1196 21 1 1.6144 -8.5069 -0.7965 22 1 0.2596 -9.2462 1.0744 23 1 -0.7838 -8.7511 -1.0579 24 6 1.8955 -2.1550 1.2193 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 0.7591 2.5298 0.8908 29 1 0.7585 2.5302 -0.8892 30 1 2.8050 3.8457 2.1137 31 1 4.4135 5.8244 1.2653 32 1 4.2031 5.9477 -1.3443 33 1 3.2625 -1.1425 -0.1955 34 1 0.4624 -2.2291 -0.9818 35 1 2.0528 -2.5466 -1.8011 36 1 2.9002 -3.7973 0.1287 37 1 0.0606 -4.0818 0.9933 38 1 -1.7297 -6.8876 1.2161 39 1 2.6998 -2.1747 1.9546 40 1 0.9183 -1.9670 1.6643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999859024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:06 Heat of formation + Delta-G solvation = 48.600148 kcal Electronic energy + Delta-G solvation = -20949.342460 eV Core-core repulsion = 17766.124330 eV Total energy + Delta-G solvation = -3183.218130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.26439 -39.95169 -37.94767 -34.77887 -33.21369 -31.83827 -30.98956 -29.94748 -26.98602 -26.83781 -25.13937 -24.34823 -22.42624 -20.72061 -20.32544 -19.47798 -18.81267 -17.58869 -17.10637 -17.02295 -16.07460 -15.65376 -14.63614 -14.55772 -14.09861 -13.91730 -13.64339 -13.44172 -13.14579 -13.04411 -12.80693 -12.63036 -12.32830 -12.17461 -12.00176 -11.79342 -11.74262 -11.26042 -10.92880 -10.58830 -10.47768 -10.25821 -10.00087 -9.76145 -9.55696 -8.92792 -8.90135 -8.43355 -8.10435 -7.01391 -5.82925 -3.11695 2.11345 2.65632 2.89051 3.14984 3.30260 3.40178 3.46558 3.48365 4.53047 4.55984 4.69429 4.86608 5.06132 5.08592 5.11850 5.19561 5.26964 5.38015 5.42794 5.44587 5.53410 5.65153 5.72974 5.84165 5.94879 6.13940 6.15730 6.24822 6.26939 6.32851 6.44266 6.54277 6.79403 6.91248 7.01484 7.05467 7.45754 7.54897 7.66989 8.24668 8.35639 9.47133 10.03662 10.38405 11.39543 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.056907 B = 0.002877 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.915915 B = 9728.774332 C = 9845.060418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C 0.509 3.491 4 O -0.533 6.533 5 C -0.071 4.071 6 C 0.034 3.966 7 C -0.181 4.181 8 C -0.200 4.200 9 C -0.015 4.015 10 N -0.554 5.554 11 H 0.411 0.589 12 C 0.117 3.883 13 C -0.174 4.174 14 C 0.169 3.831 15 N -0.710 5.710 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.163 4.163 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.064 0.936 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 21.801 -3.402 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.332 5.332 3 C 0.296 3.704 4 O -0.409 6.409 5 C -0.112 4.112 6 C -0.079 4.079 7 C -0.206 4.206 8 C -0.225 4.225 9 C -0.146 4.146 10 N -0.148 5.148 11 H 0.246 0.754 12 C 0.013 3.987 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.348 5.348 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.203 4.203 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.179 0.821 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.896 21.557 -3.594 22.199 hybrid contribution -0.460 -0.968 -0.561 1.210 sum 3.436 20.589 -4.156 21.283 Atomic orbital electron populations 1.21821 0.79626 1.03580 1.01991 1.47892 1.06884 1.05860 1.72608 1.20524 0.88166 0.85058 0.76624 1.90712 1.13812 1.87189 1.49237 1.20186 0.96459 0.89319 1.05237 1.19558 1.03350 0.98049 0.86916 1.20629 1.02066 1.00234 0.97690 1.20860 1.04923 1.02731 0.94024 1.21756 0.99410 0.97173 0.96283 1.41875 1.36478 1.28113 1.08364 0.75359 1.22590 0.97198 0.80320 0.98547 1.24317 1.01001 0.96725 0.99595 1.21342 0.93735 0.87302 0.91982 1.42360 1.18577 1.05237 1.68597 1.19359 1.02085 0.85212 1.30757 0.90955 1.24766 0.96671 0.98306 1.01166 1.69665 1.08278 1.33578 1.46569 0.86110 0.77288 0.85012 0.77744 1.20490 1.21814 1.21854 1.23920 1.01833 0.97245 0.97277 0.92494 0.89915 0.91272 0.86840 0.88592 0.85028 0.84899 0.82111 0.86971 0.89884 0.92250 0.90296 0.78120 0.93495 0.91755 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 8.84 59.85 0.53 1.28 16 2 N -0.60 -7.92 3.08 -172.99 -0.53 -8.45 16 3 C 0.51 6.96 7.67 -10.98 -0.08 6.88 16 4 O -0.53 -9.49 15.52 5.56 0.09 -9.40 16 5 C -0.07 -0.69 4.79 -29.04 -0.14 -0.83 16 6 C 0.03 0.39 5.66 -81.79 -0.46 -0.07 16 7 C -0.18 -2.22 10.77 -39.77 -0.43 -2.65 16 8 C -0.20 -2.23 10.86 -39.78 -0.43 -2.66 16 9 C -0.02 -0.15 11.94 -16.75 -0.20 -0.35 16 10 N -0.55 -5.40 6.07 -9.12 -0.06 -5.45 16 11 H 0.41 2.90 8.96 -40.82 -0.37 2.53 16 12 C 0.12 1.80 4.21 -67.12 -0.28 1.52 16 13 C -0.17 -2.93 7.31 -25.92 -0.19 -3.12 16 14 C 0.17 3.29 4.48 -67.12 -0.30 2.98 16 15 N -0.71 -17.30 5.40 -52.64 -0.28 -17.59 16 16 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 20 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 C -0.16 -2.70 7.37 -25.92 -0.19 -2.89 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.96 6.34 -51.93 -0.33 0.63 16 27 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 28 H 0.11 0.88 7.40 -51.93 -0.38 0.49 16 29 H 0.10 0.69 8.11 -51.93 -0.42 0.27 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.11 1.86 7.23 -51.93 -0.38 1.48 16 34 H 0.08 1.41 6.72 -51.93 -0.35 1.07 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 37 H 0.38 9.86 7.92 -40.82 -0.32 9.54 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.34 6.90 -51.93 -0.36 0.98 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -33.68 332.23 -8.25 -41.93 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.74 Total: 10.91 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.43 Total: -7.15 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.15 Total: -58.35 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.68 -8.25 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999859024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.525 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds