Wall clock time and date at job start Mon Mar 30 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34776 * 120.00083 * 2 1 4 4 O 1.21273 * 120.00255 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99892 * 0.02562 * 3 2 1 6 6 C 1.50690 * 109.47163 * 179.97438 * 5 3 2 7 7 C 1.34858 * 125.89120 * 275.04075 * 6 5 3 8 8 C 1.40900 * 107.41627 * 179.73386 * 7 6 5 9 9 C 1.34850 * 107.41621 * 0.37840 * 8 7 6 10 10 N 1.36341 * 125.89174 * 94.99728 * 6 5 3 11 11 H 0.97003 * 125.63345 * 0.05952 * 10 6 5 12 12 C 1.46501 * 119.99884 * 180.02562 * 2 1 3 13 13 C 1.53784 * 113.61542 * 37.49638 * 12 2 1 14 14 C 1.53776 * 87.08106 * 220.01745 * 13 12 2 15 15 N 1.46499 * 113.69168 * 139.99119 * 14 13 12 16 16 C 1.36933 * 119.99970 * 107.46169 * 15 14 13 17 17 H 1.07999 * 120.00419 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00161 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00012 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00234 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46999 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47117 * 120.00145 * 20 18 16 23 23 H 1.48498 * 109.47100 * 239.99968 * 20 18 16 24 24 C 1.53779 * 113.61602 * 299.99914 * 12 2 1 25 25 H 1.09000 * 109.46642 * 89.99902 * 1 2 3 26 26 H 1.09004 * 109.46643 * 209.99873 * 1 2 3 27 27 H 1.08995 * 109.46937 * 329.99460 * 1 2 3 28 28 H 1.09003 * 109.46730 * 59.99765 * 5 3 2 29 29 H 1.09000 * 109.46614 * 299.99801 * 5 3 2 30 30 H 1.07991 * 126.29006 * 359.97438 * 7 6 5 31 31 H 1.07999 * 126.29093 * 180.24309 * 8 7 6 32 32 H 1.08002 * 125.89234 * 179.89015 * 9 8 7 33 33 H 1.09001 * 112.84779 * 168.80472 * 12 2 1 34 34 H 1.09000 * 113.61126 * 334.56546 * 13 12 2 35 35 H 1.08998 * 113.60827 * 105.46708 * 13 12 2 36 36 H 1.09004 * 113.61525 * 270.88569 * 14 13 12 37 37 H 0.97005 * 119.99967 * 287.46617 * 15 14 13 38 38 H 0.97001 * 119.99959 * 179.97438 * 19 18 16 39 39 H 1.08995 * 113.61341 * 254.53473 * 24 12 2 40 40 H 1.09003 * 113.61133 * 25.43194 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3647 3.6177 0.0011 7 6 2.9514 4.1558 1.0896 8 6 3.7947 5.1932 0.6448 9 6 3.6847 5.2550 -0.6978 10 7 2.8109 4.2883 -1.0989 11 1 2.5496 4.1076 -2.0155 12 6 2.1976 -1.2688 -0.0006 13 6 1.5374 -2.3608 -0.8588 14 6 1.9130 -3.3526 0.2548 15 7 0.8730 -4.3460 0.5337 16 6 1.0475 -5.6475 0.1455 17 1 1.9521 -5.9418 -0.3659 18 6 0.0619 -6.5887 0.4093 19 7 -1.0407 -6.2300 1.0321 20 14 0.3003 -8.3643 -0.1196 21 1 1.6144 -8.5069 -0.7965 22 1 0.2596 -9.2462 1.0744 23 1 -0.7838 -8.7511 -1.0579 24 6 1.8955 -2.1550 1.2193 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 0.7591 2.5298 0.8908 29 1 0.7585 2.5302 -0.8892 30 1 2.8050 3.8457 2.1137 31 1 4.4135 5.8244 1.2653 32 1 4.2031 5.9477 -1.3443 33 1 3.2625 -1.1425 -0.1955 34 1 0.4624 -2.2291 -0.9818 35 1 2.0528 -2.5466 -1.8011 36 1 2.9002 -3.7973 0.1287 37 1 0.0606 -4.0818 0.9933 38 1 -1.7297 -6.8876 1.2161 39 1 2.6998 -2.1747 1.9546 40 1 0.9183 -1.9670 1.6643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999859024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:06 Heat of formation + Delta-G solvation = 26.237974 kcal Electronic energy + Delta-G solvation = -20950.312157 eV Core-core repulsion = 17766.124330 eV Total energy + Delta-G solvation = -3184.187827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.06997 -41.10170 -39.27366 -36.16756 -34.90898 -32.81179 -31.77436 -31.76729 -27.96219 -27.73711 -26.56972 -26.10881 -23.90533 -21.53152 -21.22947 -20.69738 -20.08770 -19.04221 -18.45351 -18.06118 -17.30322 -16.65153 -16.33154 -16.07453 -15.29523 -15.04082 -14.69769 -14.65141 -14.31521 -14.12052 -14.00480 -13.62525 -13.34066 -13.23690 -13.13695 -13.10280 -12.98490 -12.79160 -12.52611 -12.20977 -12.12202 -11.96514 -11.68071 -11.41755 -10.89861 -10.80891 -9.69744 -9.56638 -8.99455 -8.89684 -7.95392 -5.23410 1.30134 1.48100 1.48748 1.58507 1.62738 2.00627 2.25851 2.54892 2.57536 3.36538 3.61450 3.76464 3.81679 3.94474 3.95722 4.21324 4.23092 4.27930 4.33799 4.47975 4.55500 4.65512 4.72046 4.75194 4.84325 4.88177 4.88986 5.00762 5.09717 5.13519 5.37550 5.43666 5.44247 5.52508 5.67347 6.11158 6.24886 6.27055 6.47564 6.83728 7.20020 7.33839 8.08445 8.32863 9.27850 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.056907 B = 0.002877 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.915915 B = 9728.774332 C = 9845.060418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.599 5.599 3 C 0.507 3.493 4 O -0.581 6.581 5 C -0.062 4.062 6 C 0.020 3.980 7 C -0.211 4.211 8 C -0.229 4.229 9 C -0.010 4.010 10 N -0.550 5.550 11 H 0.423 0.577 12 C 0.132 3.868 13 C -0.159 4.159 14 C 0.151 3.849 15 N -0.722 5.722 16 C -0.243 4.243 17 H 0.075 0.925 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.294 1.294 23 H -0.293 1.293 24 C -0.150 4.150 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.142 0.858 32 H 0.193 0.807 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.376 0.624 38 H 0.251 0.749 39 H 0.065 0.935 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 23.117 -4.542 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.331 5.331 3 C 0.297 3.703 4 O -0.460 6.460 5 C -0.102 4.102 6 C -0.093 4.093 7 C -0.236 4.236 8 C -0.253 4.253 9 C -0.142 4.142 10 N -0.146 5.146 11 H 0.261 0.739 12 C 0.027 3.973 13 C -0.200 4.200 14 C 0.041 3.959 15 N -0.360 5.360 16 C -0.375 4.375 17 H 0.093 0.907 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.192 1.192 22 H -0.222 1.222 23 H -0.220 1.220 24 C -0.191 4.191 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.160 0.840 32 H 0.210 0.790 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.208 0.792 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.682 22.908 -4.766 23.687 hybrid contribution -0.317 -1.290 -0.206 1.345 sum 3.365 21.618 -4.972 22.436 Atomic orbital electron populations 1.22062 0.77520 1.04622 1.03291 1.47924 1.08086 1.04899 1.72164 1.21217 0.87786 0.86123 0.75214 1.90694 1.16051 1.87877 1.51409 1.20236 0.96017 0.86064 1.07864 1.19794 1.03826 0.98558 0.87146 1.20877 1.03217 1.01355 0.98159 1.21160 1.05692 1.03287 0.95192 1.22284 0.98588 0.97013 0.96296 1.41961 1.36064 1.27739 1.08807 0.73860 1.22187 0.96824 0.81369 0.96902 1.24067 1.01158 0.95955 0.98843 1.21625 0.92400 0.87404 0.94478 1.42485 1.19331 1.05314 1.68861 1.19709 1.01761 0.86543 1.29476 0.90692 1.25521 0.96780 1.02098 1.02206 1.69802 1.09100 1.34499 1.48397 0.85119 0.77478 0.80400 0.77041 1.19225 1.22167 1.22010 1.23772 1.02055 0.95902 0.97325 0.91048 0.91403 0.87776 0.84523 0.85363 0.85412 0.84024 0.79001 0.88029 0.89798 0.91983 0.90763 0.79164 0.93985 0.91664 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 8.84 127.77 1.13 2.31 16 2 N -0.60 -14.60 3.08 -819.62 -2.53 -17.13 16 3 C 0.51 12.90 7.67 87.66 0.67 13.57 16 4 O -0.58 -20.27 15.52 -3.01 -0.05 -20.32 16 5 C -0.06 -1.01 4.79 29.10 0.14 -0.87 16 6 C 0.02 0.42 5.66 41.08 0.23 0.65 16 7 C -0.21 -5.04 10.77 22.14 0.24 -4.80 16 8 C -0.23 -4.90 10.86 22.14 0.24 -4.66 16 9 C -0.01 -0.18 11.94 83.21 0.99 0.82 16 10 N -0.55 -9.50 6.07 -182.77 -1.11 -10.61 16 11 H 0.42 4.84 8.96 -92.71 -0.83 4.01 16 12 C 0.13 3.93 4.21 45.52 0.19 4.12 16 13 C -0.16 -5.18 7.31 31.12 0.23 -4.95 16 14 C 0.15 5.85 4.48 45.52 0.20 6.06 16 15 N -0.72 -35.37 5.40 -320.46 -1.73 -37.11 16 16 C -0.24 -13.26 9.97 84.03 0.84 -12.42 16 17 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 19 N -0.97 -57.86 13.06 21.65 0.28 -57.58 16 20 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 C -0.15 -4.92 7.37 31.12 0.23 -4.69 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.44 6.34 -2.38 -0.02 1.43 16 27 H 0.10 1.11 6.44 -2.39 -0.02 1.10 16 28 H 0.14 1.61 7.40 -2.39 -0.02 1.59 16 29 H 0.13 1.28 8.11 -2.39 -0.02 1.26 16 30 H 0.13 2.95 8.06 -2.92 -0.02 2.93 16 31 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.10 3.32 7.23 -2.39 -0.02 3.30 16 34 H 0.08 2.75 6.72 -2.39 -0.02 2.73 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.91 8.10 -2.39 -0.02 2.89 16 37 H 0.38 19.50 7.92 -92.70 -0.73 18.77 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.08 2.72 6.90 -2.39 -0.02 2.70 16 Total: -1.00 -73.23 332.23 2.19 -71.03 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.50 Total: 32.68 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.80 Total: -8.54 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -5.09 Total: -122.43 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -73.23 2.19 -71.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999859024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.272 kcal (2) G-P(sol) polarization free energy of solvation -73.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds