Wall clock time and date at job start Mon Mar 30 2020 01:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00103 * 2 1 4 4 O 1.21693 * 119.99898 * 185.88325 * 3 2 1 5 5 C 1.46678 * 120.00182 * 5.88294 * 3 2 1 6 6 C 1.37864 * 126.23455 * 185.73403 * 5 3 2 7 7 C 1.39831 * 107.08711 * 179.84645 * 6 5 3 8 8 C 1.35447 * 107.86508 * 0.41522 * 7 6 5 9 9 N 1.35533 * 108.87094 * 359.74209 * 8 7 6 10 10 H 0.97003 * 125.68130 * 180.02562 * 9 8 7 11 11 C 1.46503 * 119.99698 * 180.02562 * 2 1 3 12 12 C 1.53036 * 109.46024 * 60.02394 * 11 2 1 13 13 C 1.53200 * 109.31000 * 178.59997 * 12 11 2 14 14 N 1.46921 * 108.76542 * 54.65652 * 13 12 11 15 15 C 1.36932 * 120.63410 * 126.40467 * 14 13 12 16 16 H 1.08007 * 119.99937 * 331.12318 * 15 14 13 17 17 C 1.38815 * 120.00435 * 151.11874 * 15 14 13 18 18 N 1.31619 * 120.00085 * 163.94361 * 17 15 14 19 19 Si 1.86796 * 119.99611 * 343.94406 * 17 15 14 20 20 H 1.48497 * 109.47517 * 95.31766 * 19 17 15 21 21 H 1.48505 * 109.46710 * 215.31806 * 19 17 15 22 22 H 1.48501 * 109.47281 * 335.31143 * 19 17 15 23 23 C 1.46929 * 118.73656 * 306.38104 * 14 13 12 24 24 C 1.53036 * 109.46016 * 299.96736 * 11 2 1 25 25 H 1.09007 * 109.47070 * 275.56964 * 1 2 3 26 26 H 1.08997 * 109.47516 * 35.56131 * 1 2 3 27 27 H 1.08998 * 109.47571 * 155.56763 * 1 2 3 28 28 H 1.08005 * 126.45952 * 0.02562 * 6 5 3 29 29 H 1.08004 * 126.07252 * 180.15657 * 7 6 5 30 30 H 1.07998 * 125.57038 * 179.71541 * 8 7 6 31 31 H 1.09003 * 109.45839 * 179.97438 * 11 2 1 32 32 H 1.08994 * 109.49948 * 298.56401 * 12 11 2 33 33 H 1.09000 * 109.50046 * 58.66171 * 12 11 2 34 34 H 1.08997 * 109.59519 * 294.86414 * 13 12 11 35 35 H 1.09008 * 109.70012 * 174.50559 * 13 12 11 36 36 H 0.96996 * 119.99802 * 180.02562 * 18 17 15 37 37 H 1.08991 * 109.58790 * 293.82023 * 23 14 13 38 38 H 1.08998 * 109.70245 * 173.46577 * 23 14 13 39 39 H 1.09003 * 109.49830 * 301.34196 * 24 11 2 40 40 H 1.08998 * 109.49960 * 61.40072 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3510 1.1699 -0.1080 5 6 1.4113 2.4341 0.1302 6 6 1.9530 3.6984 0.0353 7 6 0.9070 4.6083 0.2180 8 6 -0.2284 3.8998 0.4261 9 7 0.0644 2.5774 0.3752 10 1 -0.5697 1.8526 0.4917 11 6 2.1974 -1.2688 -0.0006 12 6 1.8279 -2.0702 -1.2508 13 6 2.6218 -3.3804 -1.2657 14 7 2.3848 -4.0910 -0.0019 15 6 1.9518 -5.3901 -0.0024 16 1 1.3526 -5.7593 -0.8217 17 6 2.2828 -6.2326 1.0500 18 7 1.6270 -7.3609 1.2211 19 14 3.6591 -5.7650 2.2232 20 1 3.0853 -5.0928 3.4166 21 1 4.3861 -6.9889 2.6462 22 1 4.6001 -4.8418 1.5396 23 6 2.6217 -3.3815 1.2627 24 6 1.8281 -2.0712 1.2491 25 1 -0.3633 0.0997 1.0229 26 1 -0.3634 0.8360 -0.5976 27 1 -0.3634 -0.9356 -0.4250 28 1 2.9894 3.9404 -0.1487 29 1 0.9905 5.6849 0.2008 30 1 -1.2073 4.3199 0.6040 31 1 3.2690 -1.0694 -0.0009 32 1 0.7607 -2.2914 -1.2390 33 1 2.0695 -1.4885 -2.1405 34 1 3.6848 -3.1625 -1.3687 35 1 2.2932 -3.9997 -2.1004 36 1 1.8581 -7.9494 1.9567 37 1 3.6847 -3.1638 1.3660 38 1 2.2925 -3.9994 2.0981 39 1 2.0697 -1.4902 2.1392 40 1 0.7607 -2.2919 1.2375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005106020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:20 Heat of formation + Delta-G solvation = 60.109262 kcal Electronic energy + Delta-G solvation = -22008.278653 eV Core-core repulsion = 18825.559596 eV Total energy + Delta-G solvation = -3182.719057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60869 -39.54731 -37.62344 -35.49482 -32.71663 -31.38221 -30.56814 -30.44715 -29.11045 -27.31946 -25.22134 -23.10168 -22.72573 -21.43081 -20.80407 -20.19803 -19.28677 -17.82127 -16.87730 -16.56285 -15.77360 -15.61647 -14.99615 -14.28496 -14.15818 -14.06394 -13.83251 -13.69797 -13.23270 -13.14805 -13.00815 -12.83287 -12.50168 -12.32012 -12.23517 -11.95099 -11.83194 -10.99189 -10.90728 -10.59235 -10.24146 -10.15261 -9.95851 -9.75902 -9.48550 -9.19759 -8.73602 -8.65640 -8.35235 -7.00816 -5.97064 -3.37332 1.35911 2.57089 2.81253 3.05962 3.29923 3.34012 3.47573 3.49457 4.43476 4.49725 4.69685 4.83190 4.91477 4.98201 5.11076 5.16515 5.27858 5.29727 5.37446 5.39487 5.61916 5.74838 5.88758 5.92680 5.98595 6.00060 6.13561 6.25885 6.33564 6.48819 6.52502 6.56657 6.61441 6.65231 6.77504 6.84414 7.15232 7.36175 7.93450 8.12341 8.29787 8.89670 9.68052 10.05600 11.18850 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036821 B = 0.004150 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.254999 B = 6745.358196 C = 6831.412962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.609 5.609 3 C 0.585 3.415 4 O -0.530 6.530 5 C -0.049 4.049 6 C -0.111 4.111 7 C -0.213 4.213 8 C 0.012 3.988 9 N -0.546 5.546 10 H 0.421 0.579 11 C 0.146 3.854 12 C -0.141 4.141 13 C 0.152 3.848 14 N -0.607 5.607 15 C -0.261 4.261 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.913 5.913 19 Si 0.886 3.114 20 H -0.290 1.290 21 H -0.303 1.303 22 H -0.266 1.266 23 C 0.128 3.872 24 C -0.140 4.140 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.263 0.737 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 21.075 -1.842 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.341 5.341 3 C 0.374 3.626 4 O -0.407 6.407 5 C -0.162 4.162 6 C -0.138 4.138 7 C -0.237 4.237 8 C -0.124 4.124 9 N -0.150 5.150 10 H 0.266 0.734 11 C 0.044 3.956 12 C -0.181 4.181 13 C 0.025 3.975 14 N -0.331 5.331 15 C -0.389 4.389 16 H 0.104 0.896 17 C -0.176 4.176 18 N -0.556 5.556 19 Si 0.717 3.283 20 H -0.218 1.218 21 H -0.232 1.232 22 H -0.191 1.191 23 C 0.002 3.998 24 C -0.180 4.180 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.186 0.814 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.327 20.696 -1.807 21.447 hybrid contribution 0.147 -0.070 0.906 0.921 sum -5.181 20.626 -0.901 21.286 Atomic orbital electron populations 1.22087 0.81139 1.04150 1.01140 1.47989 1.06345 1.06443 1.73322 1.17179 0.86744 0.81952 0.76680 1.90828 1.12958 1.86445 1.50436 1.20509 0.83535 0.95386 1.16801 1.21330 0.99723 0.89969 1.02777 1.20902 0.92264 0.99525 1.11028 1.22092 1.00446 0.82952 1.06945 1.43205 1.08539 1.08367 1.54867 0.73362 1.21190 0.97534 0.80773 0.96081 1.22387 1.01617 0.97884 0.96168 1.20888 0.96144 0.90889 0.89573 1.44376 1.78469 1.10919 0.99314 1.18932 1.26613 0.84578 1.08768 0.89618 1.25318 0.98365 0.95306 0.98615 1.69785 1.41049 1.12805 1.31931 0.86923 0.84067 0.76597 0.80735 1.21774 1.23170 1.19065 1.21365 0.96639 0.91424 0.90391 1.22406 1.01872 0.97622 0.96133 0.92410 0.91333 0.88904 0.83601 0.84088 0.81359 0.88251 0.91689 0.92268 0.95550 0.91385 0.92735 0.95071 0.90862 0.92567 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 7.86 59.84 0.47 1.04 16 2 N -0.61 -8.46 2.76 -175.43 -0.48 -8.95 16 3 C 0.59 9.02 7.63 -12.85 -0.10 8.92 16 4 O -0.53 -10.05 16.23 5.20 0.08 -9.96 16 5 C -0.05 -0.63 6.65 -81.98 -0.55 -1.17 16 6 C -0.11 -1.34 10.66 -39.12 -0.42 -1.76 16 7 C -0.21 -2.00 10.81 -39.98 -0.43 -2.43 16 8 C 0.01 0.09 11.89 -16.91 -0.20 -0.11 16 9 N -0.55 -4.98 5.09 -9.39 -0.05 -5.02 16 10 H 0.42 2.89 4.86 -40.82 -0.20 2.69 16 11 C 0.15 2.40 2.47 -67.89 -0.17 2.23 16 12 C -0.14 -2.27 5.32 -26.61 -0.14 -2.41 16 13 C 0.15 2.95 6.52 -3.71 -0.02 2.92 16 14 N -0.61 -14.17 2.77 -172.32 -0.48 -14.65 16 15 C -0.26 -7.17 10.06 -15.06 -0.15 -7.32 16 16 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 17 C 0.02 0.65 5.31 -17.43 -0.09 0.56 16 18 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 19 Si 0.89 22.41 24.31 -169.99 -4.13 18.28 16 20 H -0.29 -7.10 6.76 56.52 0.38 -6.71 16 21 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 22 H -0.27 -6.59 6.08 56.52 0.34 -6.25 16 23 C 0.13 2.77 4.14 -3.71 -0.02 2.76 16 24 C -0.14 -2.46 5.34 -26.61 -0.14 -2.60 16 25 H 0.06 0.47 7.55 -51.93 -0.39 0.08 16 26 H 0.07 0.54 5.52 -51.93 -0.29 0.25 16 27 H 0.09 0.92 6.47 -51.93 -0.34 0.59 16 28 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 32 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.30 7.93 -51.92 -0.41 0.89 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.03 0.69 6.75 -51.93 -0.35 0.34 16 38 H 0.07 1.72 4.45 -51.93 -0.23 1.49 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.15 7.72 -51.93 -0.40 0.74 16 LS Contribution 309.62 15.07 4.67 4.67 Total: -1.00 -33.53 309.62 -7.06 -40.60 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.49 Total: 1.44 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.96 Total: 0.63 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.23 Total: -55.64 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.13 Total: 18.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.53 -7.06 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005106020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.705 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds